mRNA_F-serratus_M_contig1376.2741.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1376.2741.1
Unique NamemRNA_F-serratus_M_contig1376.2741.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1376.2741.1 vs. uniprot
Match: A0A6H5J981_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J981_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 2.980e-8
Identity = 39/77 (50.65%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:  157 ASMHELSSELFPLLVERLPEVLGQDATV-DP----IAAVQRGAVASAAGTSARLSAAVSFLRMLTTLVMRAPTPNEA 372
            A+MHELSS LFPLLVERLPEVLGQ+A   DP                   + R++A VS+LR+LT LV  AP P++A
Sbjct: 4409 AAMHELSSALFPLLVERLPEVLGQEAAAEDPSXXXXXXXXXXXXXXXXXXAVRVTAKVSYLRLLTALVTGAPNPSDA 4485
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1376.2741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J981_9PHAE2.980e-850.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1376contigF-serratus_M_contig1376:80272..81020 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size372
Cds size372
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929354.8618038-CDS-F-serratus_M_contig1376:80271..805211622929354.8618038-CDS-F-serratus_M_contig1376:80271..80521Fucus serratus maleCDSF-serratus_M_contig1376 80272..80521 +
1690962813.0868473-CDS-F-serratus_M_contig1376:80271..805211690962813.0868473-CDS-F-serratus_M_contig1376:80271..80521Fucus serratus maleCDSF-serratus_M_contig1376 80272..80521 +
1622929354.8757308-CDS-F-serratus_M_contig1376:80898..810201622929354.8757308-CDS-F-serratus_M_contig1376:80898..81020Fucus serratus maleCDSF-serratus_M_contig1376 80899..81020 +
1690962813.097792-CDS-F-serratus_M_contig1376:80898..810201690962813.097792-CDS-F-serratus_M_contig1376:80898..81020Fucus serratus maleCDSF-serratus_M_contig1376 80899..81020 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1376.2741.1prot_F-serratus_M_contig1376.2741.1Fucus serratus malepolypeptideF-serratus_M_contig1376 80272..81020 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1376.2741.1

>prot_F-serratus_M_contig1376.2741.1 ID=prot_F-serratus_M_contig1376.2741.1|Name=mRNA_F-serratus_M_contig1376.2741.1|organism=Fucus serratus male|type=polypeptide|length=124bp
MEEDEEDGEEDEDGDGDEEDGSGEGDEELAPAVANEAEAERSARSAMALA
AAASMHELSSELFPLLVERLPEVLGQDATVDPIAAVQRGAVASAAGTSAR
LSAAVSFLRMLTTLVMRAPTPNEA
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mRNA from alignment at F-serratus_M_contig1376:80272..81020+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1376.2741.1 ID=mRNA_F-serratus_M_contig1376.2741.1|Name=mRNA_F-serratus_M_contig1376.2741.1|organism=Fucus serratus male|type=mRNA|length=749bp|location=Sequence derived from alignment at F-serratus_M_contig1376:80272..81020+ (Fucus serratus male)
ATGGAAGAGGACGAGGAAGATGGCGAGGAGGATGAGGACGGGGATGGCGA
CGAGGAAGATGGGTCGGGAGAGGGAGATGAGGAGTTAGCTCCGGCGGTGG
CGAACGAGGCCGAGGCTGAGCGTAGTGCACGCTCAGCGATGGCGCTGGCT
GCGGCGGCTTCCATGCACGAACTCTCGTCGGAGCTGTTTCCTCTTCTCGT
TGAACGGCTGCCGGAAGTGTTGGGACAGGATGCGACTGTCGACCCTATAG
GTAAGCCATTGGAATGTGGCGATGCTTTTTCTTGTCGGGATCGGGGGGGG
AGCTACTGAAAGGGGAACCTTTTTGGAACATTTGATGCCTTTCGACTGTC
TTATCTTTATTCCTTTTACCGCAAACTAGAAACTGATCGCTGAAGAATCA
AGTTGTGGCTCGAGCGACAAGGATCAAAGGTATGACATACTATCTTATCA
TCCATAAACCCATTACAACTGCGACCCCATTGACGAAAATACCTAAAAAA
ATAAGGAAGCCCCCCCCCCAAAAAAAAAACAACTCTCAAGAATACCTTTC
TCGTGGACAAATCCGTCCTACCCCGCATCCACTGCTCCAACCGTGCACAT
CACCTCCTGTCGACGGACGGCCATCAGCCGCAGTACAAAGAGGGGCCGTG
GCTTCGGCGGCGGGCACAAGTGCGCGATTGAGCGCGGCCGTCTCCTTCTT
GCGCATGCTCACCACCCTGGTGATGCGCGCTCCGACTCCGAACGAAGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1376:80272..81020+

>mRNA_F-serratus_M_contig1376.2741.1 ID=mRNA_F-serratus_M_contig1376.2741.1|Name=mRNA_F-serratus_M_contig1376.2741.1|organism=Fucus serratus male|type=CDS|length=744bp|location=Sequence derived from alignment at F-serratus_M_contig1376:80272..81020+ (Fucus serratus male)
ATGGAAGAGGACGAGGAAGATGGCGAGGAGGATGAGGACGGGGATGGCGA
CGAGGAAGATGGGTCGGGAGAGGGAGATGAGGAGTTAGCTCCGGCGGTGG
CGAACGAGGCCGAGGCTGAGCGTAGTGCACGCTCAGCGATGGCGCTGGCT
GCGGCGGCTTCCATGCACGAACTCTCGTCGGAGCTGTTTCCTCTTCTCGT
TGAACGGCTGCCGGAAGTGTTGGGACAGGATGCGACTGTCGACCCTATAG
ATGGAAGAGGACGAGGAAGATGGCGAGGAGGATGAGGACGGGGATGGCGA
CGAGGAAGATGGGTCGGGAGAGGGAGATGAGGAGTTAGCTCCGGCGGTGG
CGAACGAGGCCGAGGCTGAGCGTAGTGCACGCTCAGCGATGGCGCTGGCT
GCGGCGGCTTCCATGCACGAACTCTCGTCGGAGCTGTTTCCTCTTCTCGT
TGAACGGCTGCCGGAAGTGTTGGGACAGGATGCGACTGTCGACCCTATAG
CCGCAGTACAAAGAGGGGCCGTGGCTTCGGCGGCGGGCACAAGTGCGCGA
TTGAGCGCGGCCGTCTCCTTCTTGCGCATGCTCACCACCCTGGTGATGCG
CGCTCCGACTCCGAACGAAGCGCCGCAGTACAAAGAGGGGCCGTGGCTTC
GGCGGCGGGCACAAGTGCGCGATTGAGCGCGGCCGTCTCCTTCTTGCGCA
TGCTCACCACCCTGGTGATGCGCGCTCCGACTCCGAACGAAGCG
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