mRNA_F-serratus_M_contig1370.2730.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1370.2730.1
Unique NamemRNA_F-serratus_M_contig1370.2730.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1370.2730.1 vs. uniprot
Match: A0A438JH99_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JH99_VITVI)

HSP 1 Score: 286 bits (731), Expect = 4.710e-80
Identity = 214/701 (30.53%), Postives = 339/701 (48.36%), Query Frame = 1
Query:    1 DVGGPMKHSGLGGNNYVVFFVDDCTRFKVVKFAKKKSDTTAAVLSLKL--------SIKCIRTDNGGEFEGE-FQRELDRCSITHEHIPPGTPQNNGVAERAFRLLREKTIILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGNSPTANHLRPFGAVGYARQSVREHKMAPKGEKCVFVGIPRN------FSTGTVSVLLVRSRNVVERQAVQWIDGPRKTGSDGTGSEDRGETQGALSEHEKDTQEARLEDEREQEREKGGSEAASGSASLERPTVSALRRPHTSVEGEALH-------------------------CFWPPIKAEEEDGVEDVLACDDGSQMAMQATLDVPEPRNRRQ-------DEWRKAEETEMLGMVENCVYKQVARPKDKLVIGTKMLYKRNVGQDGKVEKYKCRLVAQGFWQVKGVHYTEKSSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLKADINEEIYIEIPEEFQEFP--GAVGRLNKAIYGFVQAGRCWNNNFCDDMTAIGFEQAKANSCVFPKVVDGVAEMVVVIHVDDILAHAKDQATMDGFVAELGQKFRLKDMGDAEYYMGCHITRNHKARELKFGQHLYVESLVKMFDVK--KEAKIPAASGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATVTRPDIACAVRAVDRF 1950
            DV GPMK    GG +Y + F DD +R+  +   K KS++       +         SIK +R+D GGE+  E F   L    I  +  PPGTPQ+NGV+ER  R L +    +M   D  +N     LW  A+  A  + NK  T + +   +PYE+W G  P   H++ +G   Y ++ ++  K+  + +KC F+G P+       +      V + R    +ER+ +         GS G   E        L E +++T E     E E E E+   +    +  L+ PT+ A   P  ++  E ++                            P  ++       D L       ++ +   +  +P+N  +       ++W++A E+E+  M  N V+  V   KD   IG K +YK+ +G DGKVE YK RLVA+G+ Q +G+ Y E  SP     SIR+LLA AA  D E+   D + AFL  ++ E++Y+  PE +        V +L ++IYG  QA R WN +F   +    F + +   CV+ +   G   + +V++VDDIL    D   M G    L ++F +KD+G+A Y +G  I R+   R L   Q +Y+++++K ++++  K   +P  +GV TLS+ D P+ PEE+E M + PY  AVGA+M+T T TRPD+A A+    R+
Sbjct:  359 DVCGPMKIQAKGGYSYFITFTDDMSRYGFLYLMKHKSESFEMFKRFRSEVEKQTGNSIKVLRSDRGGEYLSENFIDYLRENGILSQWTPPGTPQHNGVSERRNRTLLDMVRSMMGFTDLPVN-----LWGYALEAAAYLLNKIPTKTVST--TPYEIWKGRKPNLKHIKVWGCPAYVKK-LQTDKLEARSDKCRFIGYPKETMGYYFYHPLDHKVFVARGGTFLEREFLA-------EGSHGKEIE--------LDETQEETNETTAAQEHEMEFEQPFFDVLKSTQRLQSPTIVA---PEPAIVQEQVNEXXXXXXXXXXXXXXLEQIQQPLNPIHEPLRRSNRAHRAPDRLNLMVQDDLSNEVHHNDDDPKNYEEAMQILDRNKWQEAMESEIESMKINKVWTLVEASKDIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEDVYMTQPEGYTSMSDHNKVCKLRRSIYGLKQASRSWNIHFNKTIEKFDFVKCEEEPCVYKRF-SGSTIIFLVLYVDDILLIGNDIPAMQGTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMENSKRGYLPIGTGV-TLSREDCPKTPEERERMNRVPYASAVGAIMYTMTCTRPDVAYALSVASRY 1031          
BLAST of mRNA_F-serratus_M_contig1370.2730.1 vs. uniprot
Match: UPI00202469D1 (DDE-type integrase/transposase/recombinase n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=UPI00202469D1)

HSP 1 Score: 282 bits (721), Expect = 1.150e-79
Identity = 208/671 (31.00%), Postives = 323/671 (48.14%), Query Frame = 1
Query:    1 DVGGPMKHSGLGGNNYVVFFVDDCTRFKVVKFAKKKSDTTAAVLSLK--------LSIKCIRTDNGGEF-EGEFQRELDRCSITHEHIPPGTPQNNGVAERAFRLLREKTIILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGNSPTANHLRPFGAVGYARQSVREHKMAPKGEKCVFVGIPRN------FSTGTVSVLLVRSRNVVERQAVQWIDGPRKTGSDGTG--SEDRGETQGALSEHEKDTQEARLEDEREQEREKGGSEAASGSASLERPTVSALRRPHTSVEGEALHCFWPPIKAEEEDGVEDVLACDDGSQMAMQATLDVPEPRNRRQDEWRKAEETEMLGMVENCVYKQVARPKDKLVIGTKMLYKRNVGQDGKVEKYKCRLVAQGFWQVKGVHYTEKSSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLKADINEEIYIEIPEEFQEFPGA--VGRLNKAIYGFVQAGRCWNNNFCDDMTAIGFEQAKANSCVFPKVVDGVAEMVVVIHVDDILAHAKDQATMDGFVAELGQKFRLKDMGDAEYYMGCHITRNHKARELKFGQHLYVESLVKMF--DVKKEAKIPAASGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATVTRPDIACAVRAVDRF 1950
            DV GPM     GG  YV+   DD +R+  V   K KS+T       +          IK +R+D GGE+   EF   L +C I  +  PPGTPQ NGV+ER  R L +    +M   D  ++      W  A+  A    N++ + S     +PYELWFG  P  + L+ +G   Y ++ ++  K+ PK EKCVF+G P+       +      + + ++ + +E++ +      RK   D       + G TQ  + E    T+E   +D+ E                      + LRR  ++    A   +  P+         +++  D+G     +  +  P+      D+W +A ++E+  M EN V+     P D+  I  K ++K+    DG V  YK RLVA+G+ QV+GV Y E  SP     S+R++LA AA  D E+   D + AFL   + EE+Y+  PE F +   A  V +L ++IYG VQA R WN  F + + A GF Q    +CV+ KV  G +   ++++VDDIL    D   ++   A L + F +KD+G+A Y +G  I R+   R +   Q  Y++ ++K F  D  K+  +P   GV  LS A  P   E++E+M   PY  A+G++M+    TRPD+  AV  V R+
Sbjct:  173 DVCGPMSVEARGGYRYVLTLTDDLSRYGYVYLMKHKSETFEKFKEFQNEVENQRDRKIKFLRSDRGGEYLSHEFGTHLRKCGIVSQLTPPGTPQRNGVSERRNRTLLDMVRSMMSLTDLPLS-----FWGYALETATFTLNRAPSKSVET--TPYELWFGKKPKLSFLKVWGCDAYVKK-LQPEKLEPKSEKCVFIGYPKETIGYTFYLRSEGKIFVAKNGSFLEKEFLSKEVSGRKVELDEVLPLEPENGATQENVPEVPAPTREEVNDDDHE----------------TSDQVATELRR--STRTRSAPEWYGNPVL--------EIMLLDNGEPSNYEEAMAGPDS-----DKWLEAMKSEIGSMYENEVWTLTDLPDDRRAIENKWIFKKKTDADGNVTIYKARLVAKGYRQVQGVDYDETFSPVAKLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLKEELYMMQPEGFVDPKNADKVCKLQRSIYGLVQASRSWNIRFDEMIKAFGFTQTYGEACVYKKV-SGSSVAFLILYVDDILLMGNDIEFLESIKAYLNKCFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYLDKILKKFNMDQSKKGFLPVLQGV-QLSTAQCPTTAEDREKMSVIPYASAIGSIMYAMLCTRPDVNLAVSLVGRY 802          
BLAST of mRNA_F-serratus_M_contig1370.2730.1 vs. uniprot
Match: A0A8I7BEN6_HORVV (Uncharacterized protein n=26 Tax=cellular organisms TaxID=131567 RepID=A0A8I7BEN6_HORVV)

HSP 1 Score: 275 bits (704), Expect = 3.730e-76
Identity = 201/673 (29.87%), Postives = 323/673 (47.99%), Query Frame = 1
Query:    1 DVGGPMKHSGLGGNNYVVFFVDDCTRFKVVKFAKKKSDTTAAVLSLKLS--------IKCIRTDNGGEF-EGEFQRELDRCSITHEHIPPGTPQNNGVAERAFRLLREKTIILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGNSPTANHLRPFGAVGYARQSVREHKMAPKGEKCVFVGIPRN------FSTGTVSVLLVRSRNVVERQAVQWIDGPRKTGSDGTGS----EDRGETQGALSEHEKDTQEARLEDEREQEREKGGSEAASGSASLERPTVSALRRPHTSVEGEALHCFWPPIKAEEEDGVEDVLACDDGSQMAMQATLDVPEPRNRRQDEWRKAEETEMLGMVENCVYKQVARPKDKLVIGTKMLYKRNVGQDGKVEKYKCRLVAQGFWQVKGVHYTEKSSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLKADINEEIYIEIPEEFQEFPGA--VGRLNKAIYGFVQAGRCWNNNFCDDMTAIGFEQAKANSCVFPKVVDGVAEMVVVIHVDDILAHAKDQATMDGFVAELGQKFRLKDMGDAEYYMGCHITRNHKARELKFGQHLYVESLVKMFDVKKEAK--IPAASGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATVTRPDIACAVRAVDRF 1950
            DV GPM     GG  YV+   DD +R+  +   K KS+T       +          IKC+R+D GGE+   EF   L +  I  +  PPGTPQ NGV+ER  R L +    +M   D  ++      W  A+       N++ + S     +PYELWF   P  + L+ +G   Y ++ ++  K+ PK EKCVF+G P+       +        + ++ + +E++ +      RK   D   +    ++   TQ  +      T+E   +D+ E          AS   + E    + +R         A   +  P+         +++  D+G     +  +  P+      ++W +A ++E+  M EN V+  V  P ++  I  K ++K+    +G V  YK RLVA+GF Q++GV Y E  SP     S+R++LA AA  D E+   D + AFL  ++ EE+Y+  PE F +  GA  V +L ++IYG VQA R WN  F + + A GF Q    +C++ KV  G +   +V++VDDIL    D   ++   A L + F +KD+G+A Y +G  I R+   R +   Q  Y++ ++K F+++   K  +P   G+  LSK   P    ++E+M   PY  AVG+LM+    TRPDI   +  V R+
Sbjct:  501 DVCGPMNVEARGGYRYVLTLTDDLSRYGYIYLMKHKSETFEKFKEFQSEVENQRDRKIKCLRSDRGGEYLSHEFGTHLRKYGIVSQLTPPGTPQRNGVSERRNRTLLDMVRSMMSLTDLPLS-----FWGYALETTAFTLNRAPSKSVET--TPYELWFSKKPKLSFLKVWGCDAYVKK-LQPEKLEPKAEKCVFIGYPKETIGYTFYLRSEGKTFVAKNGSFLEKEFLSKEVSGRKVELDEVITPPLEQESSATQEVVPVVPTPTEEEVNDDDHE----------ASDQVTTEPRRSTRVRS--------APEWYGNPVM--------EIMLLDNGEPSNYEEAMAGPDS-----NKWLEAMKSEIGSMYENKVWTLVDLPDERQAIENKWIFKKKTDANGNVTVYKARLVAKGFRQIQGVDYEETFSPVAKLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGNLKEELYMMQPEGFVDPKGANKVCKLQRSIYGLVQASRSWNIRFNEVIKAFGFIQVYGEACMYKKV-SGSSVAFLVLYVDDILLMGNDIEMLESIKAYLNKSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYLDKILKKFNMENSKKGFLPVLQGM-RLSKTQSPTTAADREKMSSVPYASAVGSLMYAMLCTRPDINLVISLVGRY 1132          
BLAST of mRNA_F-serratus_M_contig1370.2730.1 vs. uniprot
Match: UPI001EFFA561 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001EFFA561)

HSP 1 Score: 272 bits (696), Expect = 9.940e-76
Identity = 214/687 (31.15%), Postives = 321/687 (46.72%), Query Frame = 1
Query:    1 DVGGPMKHSGLGGNNYVVFFVDDCTRFKVVKFAKKKSDTTAAVLSLKLSI--------KCIRTDNGGEFEGEFQRELDRCSITHEHIPPGTPQNNGVAERAFRLLREKTIILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGNSPTANHLRPFGAVGYARQSVREH-KMAPKGEKCVFVGIPRN-FST---GTVSVLLVRSRNVV--ERQAVQWIDGPRK---TGSDGT---------------GSEDRGETQGALSEHEKDTQEARLEDEREQEREKGGSEAASGSASLERPTVSALRRPHTSVEGEALHCFWPPIKAEEEDGVEDVLACDDGSQMAMQATLDVPEPRNRRQDEWRKAEETEMLGMVENCVYKQVARPKDKLVIGTKMLYKRNVGQDGKVEKYKCRLVAQGFWQVKGVHYTEKSSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLKADINEEIYIEIPEEFQEF--PGAVGRLNKAIYGFVQAGRCWNNNFCDDMTAIGFEQAKANSCVFPKVVDGVAEMVVVIHVDDILAHAKDQATMDGFVAELGQKFRLKDMGDAEYYMGCHITRNHKARELKFGQHLYVESLVKMFDVK--KEAKIPAASGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATVTRPDIACAVRAVDRF 1950
            D+ GPMK   LGG  Y V F+DDC+R   V   K K          + S+        KCIRTDNGGE+ G F        I H+  PP TPQ NG+AER  R L E+   L+ E      +P    W +A+L A  V N S T +  +G  P ++W+G   + +HLR FG   +      E  K+  K  +C+FVG   + F       +   LVRSR++V  E Q ++ I+   K   + SDG                G +DR E Q  + +   D                   +  +     + P    +  P+  +           + +      E +L  D G     +  ++     +  + +W +A + EM  + EN  Y+ V  PK    +  K ++K  + +  +  +YK RLV +GF Q KG+ + E  SP    +SIR +L  AA+ + E+   D + AFL  D+ EEIY+E PE F+       V +L K++YG  QA R W   F   M   G+++  ++ CVF +       ++++++VDD+L   KD + +D    EL + F +KD+G A+  +G  ITR    R++   Q  Y+E +++ F++K  K    P AS +  LSK   P   EEKE M K PY   VG+LM+    TRPDIA AV  V RF
Sbjct:  251 DLCGPMKTKTLGGALYFVTFIDDCSRKLWVYVLKTKDQVLGVFKQFQASVERETGKKLKCIRTDNGGEYCGPFDEYCKHQGIRHQKTPPKTPQLNGLAERMNRTLMERVRCLLSEA----KLPNS-FWGEALLTAAHVINLSPTVAL-QGDVPNKVWYGKDVSYDHLRVFGCKAFVHVPKDERSKLDAKTRQCIFVGYGLDEFGYRLYDPIEKKLVRSRDIVFMENQTIEDIEKAEKLESSSSDGVVHIDEVPHASVHDVGGLDDRDEAQDHVQDQHVDI------------------DNNNDGVINDPPAHEVVDEPNIPLRRSTRQ----RVPSSRYSSNEYMLLTDGGEPECYKEAME-----DEHRGQWIEAMQDEMKSLHENHTYELVKLPKGMKALKNKWVFKVKIEEHTQKPRYKARLVVKGFGQRKGIDFDEIFSPVVKMSSIRTVLGLAASLNLEIEQMDVKTAFLHGDLEEEIYMEQPEGFKVKGKENFVCKLKKSLYGLKQAPRQWYKKFEFVMGEQGYKKTSSDHCVFVQKFSDNDFIILLLYVDDMLIVGKDTSKIDELKNELCKSFSMKDLGHAKQILGMRITRLRDERKIYLSQKKYIERVLERFNMKNAKPVSTPLASHM-KLSKKMCPTTKEEKENMAKIPYSSVVGSLMYAMVCTRPDIAHAVGVVSRF 903          
BLAST of mRNA_F-serratus_M_contig1370.2730.1 vs. uniprot
Match: A0A8J6D8V3_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D8V3_9ROSI)

HSP 1 Score: 273 bits (699), Expect = 3.430e-75
Identity = 216/682 (31.67%), Postives = 324/682 (47.51%), Query Frame = 1
Query:    1 DVGGPMKHSGLGGNNYVVFFVDDCTRFKVVKFAKKKSDTTAAVLSLKLSI--------KCIRTDNGGEFEGEFQRELDRCSITHEHIPPGTPQNNGVAERAFRLLREKTIILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGNSPTANHLRPFGAVGYARQSVREH-KMAPKGEKCVFVGIPRNFSTG-----TVSVLLVRSRNVV--ERQAVQWIDGPRKTGSDGTGSEDRGETQGALSEHEKDTQEARLEDEREQEREKGGSEAASGSASLERPTVSALRRP-HTSVEGEALHCFWPP---IKAEEED--------GVEDVLACDDGSQMAMQATLDVPEPRNRRQDEWRKAEETEMLGMVENCVYKQVARPKDKLVIGTKMLYKRNVGQDGKVEKYKCRLVAQGFWQVKGVHYTEKSSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLKADINEEIYIEIPEEF--QEFPGAVGRLNKAIYGFVQAGRCWNNNFCDDMTAIGFEQAKANSCVFPKVVDGVAEMVVVIHVDDILAHAKDQATMDGFVAELGQKFRLKDMGDAEYYMGCHITRNHKARELKFGQHLYVESLVKMF--DVKKEAKIPAASGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATVTRPDIACAVRAVDRF 1950
            DV GP+K    GG  Y V F+DDC+R   V   K K+         + S+        KCIRTDNGGE+ G F     R  I H+  PP TPQ NG+AER  R L E+   L+ +      +PR   WA+A+     V N S +    +G  P  +WFG   + +HLR FG   +      E  K+  K  +C+F+G   +   G      V   LVRSR+VV  E Q +  ID   K  S  +G  D  +   A  +   D     ++D+              G  S +   +     P + +V  +      PP   ++    D          E VL  D G     +  +     ++  +D+W +A + E+  + EN  ++ V  P+ K  +  + +Y+    +     +YK RLV +G+ Q KGV + E  SP    +SIR +L+ AA  D E+   D + AFL  D+ EE+Y+E PE F  Q     V RL K++YG  QA R W   F   M   G+++  ++ CVF K   G   ++++++VDD+L   ++ + ++    EL + F +KD+G A+  +G  +TR+ KA++L   Q  Y+E +++ F  D  K    P A     LS    P   +EKEEM+K PY  AVG+LM+    TRPD+A AV  V RF
Sbjct: 1236 DVCGPIKVRSHGGALYFVTFIDDCSRKLWVYTLKSKNQVFEVFKQFQASVERETRKKLKCIRTDNGGEYTGLFHEYCLRQGIRHQRTPPKTPQLNGLAERMNRTLIERVRCLLSDA----KLPRS-FWAEALNTVAHVINLSPSVPL-QGDVPDRVWFGKDVSYDHLRVFGCKAFVHVPKDERSKLDAKTRQCIFIGYGLDGEFGYRLYDPVQKKLVRSRDVVFIEDQTIDDIDKTEKVDSQDSG--DLIDVNPAPLDSSPDP----IQDD------------VHGDVSDDHQDIGDFDTPMNDAVNDQQQEPIAPPAVPLRRSSRDRRSSVRYSSDEYVLLTDGGEPECYEEAM-----KSECKDQWVEAMKDELQSLHENHTFELVKLPEGKRALKNRWVYRLKQEEKSSSLRYKARLVVKGYAQKKGVDFEEIFSPVVKMSSIRTILSLAACYDLEVEQMDVKTAFLHGDLEEELYMEQPEGFVLQGKEDYVCRLKKSLYGLKQAPRQWYKKFESVMGEQGYKKTTSDHCVFVKRFSGDDFIILLLYVDDMLIVGQNASRIEKLKQELSKSFAMKDLGPAKQILGIRLTRDRKAKKLWLSQERYIEKVLQRFSMDKAKAVNTPFAMHF-RLSVKHSPSTEKEKEEMQKIPYSSAVGSLMYAMVCTRPDLAYAVGTVSRF 1887          
BLAST of mRNA_F-serratus_M_contig1370.2730.1 vs. uniprot
Match: A0A446P200_TRITD (Uncharacterized protein n=2 Tax=cellular organisms TaxID=131567 RepID=A0A446P200_TRITD)

HSP 1 Score: 265 bits (677), Expect = 1.530e-72
Identity = 206/683 (30.16%), Postives = 312/683 (45.68%), Query Frame = 1
Query:    1 DVGGPMKHSGLGGNNYVVFFVDDCTRFKVVKFAKKKSDTTAAVLSLKLS--------IKCIRTDNGGEFEG-EFQRELDRCSITHEHIPPGTPQNNGVAERAFRLLREKTIILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGNSPTANHLRPFGAVGYARQSVREHKMAPKGEKCVFVGIPRN------FSTGTVSVLLVRSRNVVERQAVQWIDGPRKTGSDGTGSEDRGETQGALSEHEKDTQEARLEDEREQEREKGGSEAASGSASLERPTVSALRRPHTSVEGEALHCFWPPIKAEEEDGVED-----VLACDD--GSQMAMQATLDVPEPRNRRQD-------EWRKAEETEMLGMVENCVYKQVARPKDKLVIGTKMLYKRNVGQDGKVEKYKCRLVAQGFWQVKGVHYTEKSSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLKADINEEIYIEIPEEFQEFPGA--VGRLNKAIYGFVQAGRCWNNNFCDDMTAIGFEQAKANSCVFPKVVDGVAEMVVVIHVDDILAHAKDQATMDGFVAELGQKFRLKDMGDAEYYMGCHITRNHKARELKFGQHLYVESLVKMF--DVKKEAKIPAASGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATVTRPDIACAVRAVDRF 1950
            DV GPM      G  Y + F DD +R+  +   K KS+T       +          IK +R D GGE+   EF   L  C I  +  PPGTPQ NGV+ER  R L +    ++  +  + N+P    W  A+  A    N++ + S     +PYELWFG  P  + L+ +G   Y ++ ++  K+ PK EKCVF+G P+       +        + +  N +E++ +      RK   D                 E       L+                  +S  + TVS    P      +  H      +  ++D  E      V +  +  G+ +     LD  EP N  +        +W +A ++EM  M EN V+  V  P D+  I  K ++K+    DG V  YK RLVA+GF QV+GV Y E   P     S+R++LA AA  D E+   D + AFL   + EE+Y+   E F +  GA  V +L ++IYG VQA R WN  F   + A GF Q    +C++ KV  G +   ++++VDDIL    D   +D     L + F +KD+G+A Y +G  I R+   R +   Q  YV+ ++K F  D  K+  +    GV  LS+   P   E++E+MK  PY  A+G++M+    TRPD+  A+    R+
Sbjct:  502 DVCGPMNVEARAGYRYFLTFTDDLSRYGYIYLMKHKSETFEKFKEFQSEVENHRNKKIKFLRPDRGGEYLSYEFGVHLKNCGIVSQLTPPGTPQRNGVSERRNRTLLD----MVRSMISLTNLPLS-FWGYALETAAFTLNRAPSKSVE--MTPYELWFGKKPKLSFLKVWGCDAYVKK-LQPDKLEPKSEKCVFIGYPKETIGYTFYHKSEGKTFVAKFGNFLEKEFLSKEVSGRKVELD-----------------EVTVPSPLLK------------------SSTSQKTVSVTPTPVNEEANDNDH------ETSDQDTTEPRRSTRVRSAPEWYGNPVLEVMLLDHDEPTNYEEAMVSPDSAKWLEAMKSEMGSMYENKVWTLVDLPDDRQAIENKWIFKKKTDADGNVTVYKARLVAKGFRQVQGVDYDETFLPVAMLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLEEELYMMQLEGFVDPKGANKVCKLQRSIYGLVQASRSWNKRFDSVIKAFGFIQTFGEACIYKKV-SGSSVAFLILYVDDILLIGNDIKFLDSIKGYLNKSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYVDKILKKFKMDQAKKGFLHVLQGV-KLSQTQCPTTAEDREKMKDVPYASAIGSIMYAMLCTRPDVCLAISLAGRY 1133          
BLAST of mRNA_F-serratus_M_contig1370.2730.1 vs. uniprot
Match: A0A151UC72_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151UC72_CAJCA)

HSP 1 Score: 264 bits (674), Expect = 3.560e-72
Identity = 203/666 (30.48%), Postives = 318/666 (47.75%), Query Frame = 1
Query:   16 MKHSGLGGNNYVVFFVDDCTRFKVVKFAKKKSDTTAAVLSLKL--------SIKCIRTDNGGEFEGEFQRELDRCSITHEHIPPGTPQNNGVAERAFRLLREKTIILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGNSPTANHLRPFGAVGYARQSVREH-KMAPKGEKCVFVGIPRN-FST---GTVSVLLVRSRNVV--ERQAVQWIDGPRKTGSDGTGSEDRGETQGALSEHEKDTQEARLEDEREQEREKGGSEAASGSASLERPTVSALRRPHTSVEG-EALHCFWPPIKAEEEDGVEDVLACDDGSQMAMQATLDVPEPRNRRQDEWRKAEETEMLGMVENCVYKQVARPKDKLVIGTKMLYKRNVGQDGKVEKYKCRLVAQGFWQVKGVHYTEKSSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLKADINEEIYIEIPEEFQEFPGA---VGRLNKAIYGFVQAGRCWNNNFCDDMTAIGFEQAKANSCVFPKVVDGVAEMVVVIHVDDILAHAKDQATMDGFVAELGQKFRLKDMGDAEYYMGCHITRNHKARELKFGQHLYVESLVKMFDVKK--EAKIPAASGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATVTRPDIACAVRAVDRF 1950
            M    +GG  Y V F+DD +R   +   K K     A               IKC+R+DNGGE+ G F+    +  I  E  PP TPQ NG+AER  R + E+   ++        +P+   W +A++   D+ N + +     G  P E+W G   + NHL+ FG   +      E  K+  K ++C+++  P++ F       ++  +VRSR+VV  E Q ++ I    K          R  T+    +HE +      + E ++   +  ++      + E P  S+L  P       E     W   +       E V+  D+G   + +  +     ++  ++EWRKA + EM  + EN  Y+ V  PK +  +  K +Y+     +    +YK RLV +GF Q KG+ + E  SP    +SIR++L  AA +D E+   D + AFL  D+ EEIY+E PE F+  PG    V RL K++YG  QA R W   F   M    F++ +++ CVF K       ++++++VDD+L   +D+  +     +L + F +KD+G A+  +G  ITR+   R L   Q  Y+E +++ F++ K      P A G   LS    P +  E EEMKK PY   VG+LM+    TRPDIA AV  V RF
Sbjct:  476 MSEKSIGGALYFVTFIDDHSRKVWLHLLKSKDQVLDAFKEFHALVERETGRKIKCVRSDNGGEYRGPFETYCKKHGIRLEKTPPKTPQLNGLAERMNRTIEERVRCVLSHA----KLPK-LFWGEAIMAVVDIVNLTPSVPLG-GAIPDEVWTGKRASYNHLKVFGCRAFVHIPKDERAKLDAKTKECIYLRSPKDEFGYRLWDPINKKVVRSRDVVFFEDQTIEDIKNSEKPRL-------RKSTELTPVQHENNETHQDNDPEEDEPVLEQSNQETHDEPAQEDPQSSSLPAPEPRRSSRERRPSTWYNTE-------EYVMLTDEGEPQSYKEAI-----KDIHKEEWRKAMQEEMQSLHENHTYELVELPKGRRALKNKWVYRIKTEDNNTKPRYKARLVVKGFGQEKGIDFEEIFSPVVKMSSIRVILGIAATQDLEIEQLDVKTAFLHGDLEEEIYMEQPEGFK-VPGKENLVCRLTKSLYGLKQAPRQWYKKFESFMAEHEFKKTESDHCVFIKRYASGDFLILLLYVDDMLIFGQDRIKIAALKKDLSKSFAMKDLGPAKQILGMRITRDRSKRLLWLSQERYIEKVLEQFNMDKCKPVNTPLA-GHFRLSSKQSPTSEREMEEMKKIPYSSVVGSLMYAMICTRPDIAYAVGVVSRF 1114          
BLAST of mRNA_F-serratus_M_contig1370.2730.1 vs. uniprot
Match: UPI001F373689 (DDE-type integrase/transposase/recombinase n=4 Tax=Terrabacteria group TaxID=1783272 RepID=UPI001F373689)

HSP 1 Score: 263 bits (672), Expect = 4.860e-72
Identity = 211/671 (31.45%), Postives = 311/671 (46.35%), Query Frame = 1
Query:    1 DVGGPMKHSGLGGNNYVVFFVDDCTRFKVVKFAKKKSDT--------TAAVLSLKLSIKCIRTDNGGEFE-GEFQRELDRCSITHEHIPPGTPQNNGVAERAFRLLREKTIILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGNSPTANHLRPFGAVGYARQSVREHKMAPKGEKCVFVGIPRNFSTGTV------SVLLVRSRNVVERQAVQWIDGPRKTGSDGTGSEDRGETQGALSEHEKDTQEARLEDEREQEREKGGSEAASGSASLERPTVSALRRPHTSVEGEALHCFWPPIKAEEEDGVEDVLACDDGSQMAMQATLDVPEPRNRRQDEWRKAEETEMLGMVENCVYKQVARPKDKLVIGTKMLYKRNVGQDGKVEKYKCRLVAQGFWQVKGVHYTEKSSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLKADINEEIYIEIPEEF----QEFPGAVGRLNKAIYGFVQAGRCWNNNFCDDMTAIGFEQAKANSCVFPKVVDGVAEMVVVIHVDDILAHAKDQATMDGFVAELGQKFRLKDMGDAEYYMGCHITRNHKARELKFGQHLYVESLVKMFDV--KKEAKIPAASGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATVTRPDIACAVRAVDRF 1950
            DV GPM     GG  Y + F DD +R+  V   ++KS+           A L L   IK +R+D GGE+  GEF+  L +  I  +   PGTPQ NGVAER  R L +    +M      I+      W  A+  A  + N  +  S +  ++P E+W G  P+  H+  +G   Y     +  K+ P+ E C F+G P+    G         VL+      +E   +      ++ G   T  E   ET        +  +   +     + R  G                  + RP     G +          + ED VED  + D+       A  D+        D W++A ++E+  +  N V++ V  P+    IG K +YKR  G DGKVE +K RLVA+G+ Q +G+ Y E  SP     SIR+LLA A   D E+   D + AFL   ++E IY+  PE F    QE    V +L K+IYG  QA R WN  F   + + GF+Q     CV+ K   G A   +V++VDDIL    D   M      L  +F++KD+G+A Y +G  + R+ K + L   Q  Y+E ++  +++   K+  +P+  GVP LS+   P+ PEE E M++ PY  AVG+LM+    TRPDI  AV  V R+
Sbjct:  418 DVCGPMNKLARGGYEYFITFTDDYSRYGYVYLMRRKSEAFDKFKQFKAEAELQLGKHIKALRSDRGGEYLLGEFKEYLTQHGIVSQLSAPGTPQQNGVAERRNRTLLDMVRSMMSHATLPIS-----FWGYALEAAAYILN--LVPSKSVPRTPQEMWTGRKPSLRHIHIWGCPAYVLND-KATKLEPRSEMCYFIGYPKGTRGGIFYHPKEQKVLISTHARYLEDDCMMH----QELGCKETLEEILSETPATSVPDPEAVENQDIPFNTPEPRRSG-----------------RISRPPDRYLGVS-------FMTDSEDLVEDPTSYDE-------AVTDIDA------DMWQQAMKSELDSLYSNQVWELVDAPEGIKPIGCKWIYKRKRGVDGKVETFKARLVAKGYTQKEGIDYEETFSPVAMLKSIRILLAIACHYDYEIWQMDVKTAFLNGSLDECIYMMQPEGFIAGGQE--NMVCKLKKSIYGLKQASRAWNIKFNQAVKSFGFDQNIDEPCVYKKG-SGNAVAFLVLYVDDILLIGNDVGMMSSTKVWLSSQFQMKDLGEASYVLGIKLLRDRKNKMLALSQSSYIEKILVKYNMHDSKKGLLPSRHGVP-LSRNQCPKTPEEIESMRRVPYASAVGSLMYAMLCTRPDICFAVGMVSRY 1035          
BLAST of mRNA_F-serratus_M_contig1370.2730.1 vs. uniprot
Match: A0A2N9EZ52_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EZ52_FAGSY)

HSP 1 Score: 264 bits (675), Expect = 5.060e-72
Identity = 220/674 (32.64%), Postives = 327/674 (48.52%), Query Frame = 1
Query:    1 DVGGPMKHSGLGGNNYVVFFVDDCTRFKVVKFAKKKSDTT--------AAVLSLK-LSIKCIRTDNGGEF-EGEFQRELDRCSITHEHIPPGTPQNNGVAERAFRLLREKTIILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGNSPTANHLRPFGAVGYARQSVREH-KMAPKGEKCVFVGI-PRNFST---GTVSVLLVRSRNVV--ERQAVQWIDGPRKTGSDGTGSEDRGETQGALSEHEKDTQEARLEDEREQEREKGGSEA--ASGSASLERPTVSALRRPHTSVEGEALHCFWPPIKAEEEDGVEDVLACDDGSQMAMQATLDVPEPRNRRQDEWRKAEETEMLGMVENCVYKQVARPKDKLVIGTKMLYKRNVGQDG-KVEKYKCRLVAQGFWQVKGVHYTEKSSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLKADINEEIYIEIPEEFQEFPGA---VGRLNKAIYGFVQAGRCWNNNFCDDMTAIGFEQAKANSCVFPKVVDGVAEMVVVIHVDDILAHAKDQATMDGFVAELGQKFRLKDMGDAEYYMGCHITRNHKARELKFGQHLYVESLVKMFDVKKEAKIPAASGVP-TLSKADEPRNPEEKEEMKKFPYREAVGALMWTATVTRPDIACAVRAVDRF 1950
            DV GP++   LGGN Y V F+DD +R KV  +  K  D          A V   K  S+KC+RTDNGGE+   EF+       I HE   PGTPQ+NGVAER  R + EK   ++     +  +P+   WA+A+  AC + N+S +    +   P  +W G   +  HL+ FG   +A     +  K+  K   C+FVG     F           ++RSR+VV  E + ++  +   K+ S   G  D   T  + S+   D +E ++E+  ++  E  G +A    G    E+P    +  P         H   P  +       E VL  D+G   + Q         ++ +  W KA   EM  + +N  Y+ V  PK K  +  K ++K  + +DG K+ KYK RLV +GF Q +G+ + E  SP    +SIR++L   A+ D EL   D + AFL  D+ EEIY+  PE F E  G    V RL K++YG  QA R W   F   M   G+ +   + CV+ +       ++++++VDD+L   +D   +     EL + F +KD+G A   +G  I R+ KA++L   Q  YVE +++ F++K    +    G    LSK   P + +EKE M   PY  AVG+LM+    TRPDIA AV  V RF
Sbjct:  840 DVCGPIEVKSLGGNRYFVTFIDDASR-KVWVYVLKTKDQVFQLFKKFHAMVEREKGKSLKCLRTDNGGEYTSNEFENYCSEYGIRHEKTVPGTPQHNGVAERINRTIVEKVRCMLR----MAKLPKS-FWAEAVQTACYLINRSPSVPL-DFDIPERVWTGEDASYAHLKVFGCKTFAHVPKEQRLKLDDKATPCIFVGYGDAEFGYKLWDPKKKKMIRSRDVVFHENENIKDFEKSEKSKSTVEGVSDLTPTSSS-SDIATDIEEVQVENYGDEPAEVDGDDAIDTEGVEQGEQPIPPEMEEPQVRRSTRERH---PSTRYSTS---EYVLITDEGEPESFQEVQS-----HKDKQSWMKAMHEEMDSLHKNNTYELVELPKGKKALRNKWVFK--LKKDGEKLVKYKARLVVKGFNQKQGIDFDEIFSPVVKMSSIRVILGLTASLDLELEQMDVKTAFLHGDLEEEIYMVQPEGF-EAKGKEHKVCRLKKSLYGLKQAPRQWYKKFDSFMVGQGYTRTDVDHCVYVRQFPNGKFIILLLYVDDMLIVGQDANMVGSLKKELFKSFDMKDLGPARQILGMQILRDRKAKKLWLSQEKYVERVLERFNMKHAKPVSTPLGGHFKLSKKSCPSSNKEKENMASIPYSSAVGSLMYAMVCTRPDIAHAVGVVSRF 1491          
BLAST of mRNA_F-serratus_M_contig1370.2730.1 vs. uniprot
Match: A0A5A7QRB1_STRAF (Gag-pol polyprotein n=2 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QRB1_STRAF)

HSP 1 Score: 262 bits (669), Expect = 1.550e-71
Identity = 216/672 (32.14%), Postives = 321/672 (47.77%), Query Frame = 1
Query:    1 DVGGPMKHSGLGGNNYVVFFVDDCTRFKVVKFAKKKSDTTA------AVLSLKLSIKCI---RTDNGGEFE-GEFQRELDRCSITHEHIPPGTPQNNGVAERAFRLLREKTIILMEELDDVINVPREKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGNSPTANHLRPFGAVGYARQSVREH-KMAPKGEKCVFVGIPRN------FSTGTVSVLLVRSRNVVERQAVQWIDGPRKTGSDGTGSEDRGETQGALSEHEKDTQEARLEDEREQEREKGGSEAASGSASLERPTVSALRRPHTSVEGEALHCFWPPIKAEEEDGVEDVLACDDGS-QMAMQATLDVPEPRNRRQDEWRKAEETEMLGMVENCVYKQVARPKDKLVIGTKMLYKRNVGQDGKVEKYKCRLVAQGFWQVKGVHYTEKSSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLKADINEEIYIEIPEEF--QEFPGAVGRLNKAIYGFVQAGRCWNNNFCDDMTAIGFEQAKANSCVFPKVVDGVAEMVVVIHVDDILAHAKDQATMDGFVAELGQKFRLKDMGDAEYYMGCHITRNHKARELKFGQHLYVESLVKMFDVK--KEAKIPAASGVPTLSKADEPRNPEEKEEMKKFPYREAVGALMWTATVTRPDIACAVRAVDRF 1950
            D+ GPM     GG  Y V F+DD +RF  V    +KS+         AV+  KL  KCI   R+D GGE+  GEF+  L    I  +   PGTPQ NGVAER  R L E    ++  +     +P +  W  A+  A  + N  +  S +   +PYE+W G  P+ +  R +G+  +    V+E  K+  + E  VFVG P+       +S     V++  +   +E   +       K  S     E RGE  G+    + DT                    +  +A+    +V     P  S     L   W  +  E  D V   L  D  +   A+Q         ++  D W  A + EM  M  N V+  V  P     IG K +YKR  G DGKV+ +K RLVA+G+ Q++G+ Y E  SP     SIR+LLA AA  D E+   D + AFL  ++ E+IY++ PE F  +     V +LN++IYG  QA R WN  F + + + GF Q     CV+ K+  G   + +V++VDDIL     +  +      L ++F +KD+G+A + +G  + R+ K R L   Q  Y+++++  F ++  K+  +P   G+P LSK   P+  +E EEMK  PY  AVG+LM+    TRPDI+ AV  V R+
Sbjct:  494 DLCGPMSIQARGGFEYYVSFIDDYSRFGYVYLLHRKSECFEKFKEYRAVVE-KLHGKCIKSLRSDRGGEYLFGEFRTYLSEAGIESQLTAPGTPQQNGVAERRNRTLME----MVRSMMSYSRLP-DSFWGLALETASYILN--MVPSKSVDTTPYEMWKGRKPSFSQFRVWGSPAHVL--VQEPGKLEKRSEARVFVGYPKGTKGGLFYSPEDQKVIVSTNARFLEEDYIM----NHKPASRLVLEELRGEIDGSPPSAQVDT--------------------SHNTATRHTESVPVQTVPRRSGRVSHLPDRWIGL-GESSDSVPGGLESDPRTYDEALQ---------DKDADSWNVAMKAEMGSMDSNQVWDLVELPDGVRPIGCKWIYKRKRGLDGKVQTFKARLVAKGYTQIEGIDYDETFSPVAMLKSIRILLAVAAHMDYEVWQMDVKTAFLNGNLQEDIYMQQPEGFIAEGREHLVCKLNRSIYGLKQASRSWNIRFDEVIQSYGFTQCPDEHCVYKKI-SGSVVVFLVLYVDDILLIGNSKKELSDVKVWLSKQFDMKDLGEAGHILGIRLIRDRKKRMLCLSQSSYIDTVLARFSMQDSKKGMLPFRHGIP-LSKEMSPKTSKEIEEMKTVPYASAVGSLMYAMLCTRPDISYAVGMVARY 1119          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1370.2730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438JH99_VITVI4.710e-8030.53Retrovirus-related Pol polyprotein from transposon... [more]
UPI00202469D11.150e-7931.00DDE-type integrase/transposase/recombinase n=3 Tax... [more]
A0A8I7BEN6_HORVV3.730e-7629.87Uncharacterized protein n=26 Tax=cellular organism... [more]
UPI001EFFA5619.940e-7631.15DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A8J6D8V3_9ROSI3.430e-7531.67Uncharacterized protein n=1 Tax=Gossypium anomalum... [more]
A0A446P200_TRITD1.530e-7230.16Uncharacterized protein n=2 Tax=cellular organisms... [more]
A0A151UC72_CAJCA3.560e-7230.48Retrovirus-related Pol polyprotein from transposon... [more]
UPI001F3736894.860e-7231.45DDE-type integrase/transposase/recombinase n=4 Tax... [more]
A0A2N9EZ52_FAGSY5.060e-7232.64Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A5A7QRB1_STRAF1.550e-7132.14Gag-pol polyprotein n=2 Tax=Striga asiatica TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1370contigF-serratus_M_contig1370:234924..237074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score254.2
Seed ortholog evalue1.6e-64
Seed eggNOG ortholog164328.Phyra85763
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons4
Model size1950
Cds size1935
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1370.2730.1prot_F-serratus_M_contig1370.2730.1Fucus serratus malepolypeptideF-serratus_M_contig1370 234924..237059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929353.9869409-CDS-F-serratus_M_contig1370:234923..2360281622929353.9869409-CDS-F-serratus_M_contig1370:234923..236028Fucus serratus maleCDSF-serratus_M_contig1370 234924..236028 -
1690962812.6870413-CDS-F-serratus_M_contig1370:234923..2360281690962812.6870413-CDS-F-serratus_M_contig1370:234923..236028Fucus serratus maleCDSF-serratus_M_contig1370 234924..236028 -
1622929354.0067468-CDS-F-serratus_M_contig1370:236085..2362301622929354.0067468-CDS-F-serratus_M_contig1370:236085..236230Fucus serratus maleCDSF-serratus_M_contig1370 236086..236230 -
1690962812.7034388-CDS-F-serratus_M_contig1370:236085..2362301690962812.7034388-CDS-F-serratus_M_contig1370:236085..236230Fucus serratus maleCDSF-serratus_M_contig1370 236086..236230 -
1622929354.025625-CDS-F-serratus_M_contig1370:236350..2369121622929354.025625-CDS-F-serratus_M_contig1370:236350..236912Fucus serratus maleCDSF-serratus_M_contig1370 236351..236912 -
1690962812.7149146-CDS-F-serratus_M_contig1370:236350..2369121690962812.7149146-CDS-F-serratus_M_contig1370:236350..236912Fucus serratus maleCDSF-serratus_M_contig1370 236351..236912 -
1622929354.039009-CDS-F-serratus_M_contig1370:236936..2370591622929354.039009-CDS-F-serratus_M_contig1370:236936..237059Fucus serratus maleCDSF-serratus_M_contig1370 236937..237059 -
1690962812.7275813-CDS-F-serratus_M_contig1370:236936..2370591690962812.7275813-CDS-F-serratus_M_contig1370:236936..237059Fucus serratus maleCDSF-serratus_M_contig1370 236937..237059 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929354.065032-UTR-F-serratus_M_contig1370:237059..2370741622929354.065032-UTR-F-serratus_M_contig1370:237059..237074Fucus serratus maleUTRF-serratus_M_contig1370 237060..237074 -
1690962812.7387867-UTR-F-serratus_M_contig1370:237059..2370741690962812.7387867-UTR-F-serratus_M_contig1370:237059..237074Fucus serratus maleUTRF-serratus_M_contig1370 237060..237074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1370.2730.1

>prot_F-serratus_M_contig1370.2730.1 ID=prot_F-serratus_M_contig1370.2730.1|Name=mRNA_F-serratus_M_contig1370.2730.1|organism=Fucus serratus male|type=polypeptide|length=645bp
MKHSGLGGNNYVVFFVDDCTRFKVVKFAKKKSDTTAAVLSLKLSIKCIRT
DNGGEFEGEFQRELDRCSITHEHIPPGTPQNNGVAERAFRLLREKTIILM
EELDDVINVPREKLWAQAMLFACDVTNKSVTTSTNEGKSPYELWFGNSPT
ANHLRPFGAVGYARQSVREHKMAPKGEKCVFVGIPRNFSTGTVSVLLVRS
RNVVERQAVQWIDGPRKTGSDGTGSEDRGETQGALSEHEKDTQEARLEDE
REQEREKGGSEAASGSASLERPTVSALRRPHTSVEGEALHCFWPPIKAEE
EDGVEDVLACDDGSQMAMQATLDVPEPRNRRQDEWRKAEETEMLGMVENC
VYKQVARPKDKLVIGTKMLYKRNVGQDGKVEKYKCRLVAQGFWQVKGVHY
TEKSSPTPSTASIRMLLATAAAKDGELRHFDAEQAFLKADINEEIYIEIP
EEFQEFPGAVGRLNKAIYGFVQAGRCWNNNFCDDMTAIGFEQAKANSCVF
PKVVDGVAEMVVVIHVDDILAHAKDQATMDGFVAELGQKFRLKDMGDAEY
YMGCHITRNHKARELKFGQHLYVESLVKMFDVKKEAKIPAASGVPTLSKA
DEPRNPEEKEEMKKFPYREAVGALMWTATVTRPDIACAVRAVDRF
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mRNA from alignment at F-serratus_M_contig1370:234924..237074-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1370.2730.1 ID=mRNA_F-serratus_M_contig1370.2730.1|Name=mRNA_F-serratus_M_contig1370.2730.1|organism=Fucus serratus male|type=mRNA|length=2151bp|location=Sequence derived from alignment at F-serratus_M_contig1370:234924..237074- (Fucus serratus male)
GACGTGGGCGGGCCGATGAAGCACTCGGGTCTAGGCGGGAACAACTACGT CGTCTTTTTTGTGGACGACTGCACCCGCTTTAAGGTGGTGAAGTTCGCGA AGAAGAAGAGTGACACAACGGCTGCTGTCTTGTCTCTGGTTGCAGACTAT ATCACACCGTAGAAGCTGTCGATCAAGTGCATACGGACGGATAATGGTGG CGAGTTTGAGGGAGAATTTCAGCGCGAATTGGACCGGTGCAGCATCACGC ACGAGCATATCCCGCCAGGCACGCCGCAGAACAATGGGGTGGCCGAACGT GCGTTTAGGCTTTTGAGAGAAAAGACGATCATCCTGATGGAGGAGCTAGA CGACGTCATCAACGTGCCGCGAGAGAAGCTATGGGCTCAGGCAATGCTTT TCGCGTGCGACGTCACCAACAAGTCAGTCACAACGTCAACGAATGAGGGT AAGTCGCCGTATGAACTGTGGTTCGGAAATTCCCCTACTGCCAATCATTT GCGACCGTTTGGAGCGGTGGGATACGCGCGACAGAGCGTGCGTGAACATA AGATGGCGCCAAAAGGGGAGAAATGCGTGTTCGTGGGAATTCCCCGAAAC TTCTCCACTGGCACGGTAAGCGTGCTACTCGTAAGGTCAAGAAATGTCGT GGAAAGGCAGGCCGTGCAGTGGATCGACGGGCCTAGAAAGACAGGGAGTG ACGGGACCGGCAGTGAGGACCGCGGTATGAAGTCGGCGGGAGGTGAAATC ATTGTTGAGAGAGGTACTCCGCAGCTAAATGTTCAGGAGCTAGAACAGTA AAAACACGAGCACGAGTGGCAGGAGGCAATTTTGGAACTCGAAGGGGAGA CGCAAGGGGCGTTATCAGAACATGAGAAGGATACGCAGGAGGCGCGTTTG GAAGACGAGCGCGAGCAGGAGCGTGAGAAAGGGGGATCGGAAGCGGCATC AGGGTCGGCAAGTTTGGAGAGACCGACCGTATCCGCGCTGTGAAAGCTCA CCATCGACCGCAATGTCCCGCCCATACTGTCATCACGTCCAAGGAGTCGG AGACCCCACACCAGTGTGGAGGGGGAAGCGTTGCACTGTTTCTGGCCGCC GATCAAGGCCGAAGAGGAAGACGGCGTGGAGGATGTGTTGGCATGCGACG ACGGGAGCCAGATGGCTATGCAAGCGACGCTAGACGTACCGGAACCGAGA AATCGGCGACAGGACGAATGGCGGAAGGCAGAAGAGACTGAGATGCTTGG AATGGTCGAGAACTGCGTTTATAAGCAGGTGGCTCGGCCGAAGGACAAGC TCGTGATCGGCACAAAAATGTTATACAAGCGAAACGTCGGACAGGATGGC AAGGTCGAGAAGTACAAGTGTCGACTTGTCGCTCAAGGGTTCTGGCAGGT GAAAGGTGTGCACTACACGGAAAAGTCTTCGCCCACGCCATCAACCGCGT CAATCCGGATGCTTTTGGCGACGGCAGCGGCGAAGGATGGAGAGCTACGC CATTTCGACGCAGAGCAGGCATTTTTGAAGGCGGATATTAACGAAGAAAT ATACATTGAGATCCCCGAGGAGTTCCAGGAGTTTCCGGGGGCAGTGGGAC GGCTTAATAAGGCCATTTACGGATTCGTGCAGGCGGGGAGGTGCTGGAAT AATAACTTCTGTGACGACATGACGGCGATTGGATTCGAGCAGGCAAAAGC GAACTCGTGCGTGTTCCCCAAGGTCGTTGACGGTGTGGCGGAGATGGTGG TGGTCATACACGTAGACGACATCCTTGCCCACGCCAAAGACCAAGCGACG ATGGATGGATTCGTGGCCGAGCTTGGGCAGAAGTTTAGATTGAAGGATAT GGGGGACGCTGAGTACTACATGGGTTGTCACATCACCAGGAACCACAAGG CGCGCGAGTTGAAGTTTGGCCAACACCTGTACGTGGAGTCTCTGGTAAAG ATGTTTGACGTCAAGAAGGAAGCTAAGATACCGGCTGCGTCGGGGGTGCC GACGCTCTCAAAGGCAGATGAACCGCGGAACCCAGAGGAGAAGGAAGAAA TGAAGAAGTTCCCGTACCGAGAGGCAGTGGGGGCGCTCATGTGGACGGCA ACGGTGACACGGCCGGATATTGCGTGCGCCGTACGCGCCGTGGACAGGTT C
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Coding sequence (CDS) from alignment at F-serratus_M_contig1370:234924..237074-

>mRNA_F-serratus_M_contig1370.2730.1 ID=mRNA_F-serratus_M_contig1370.2730.1|Name=mRNA_F-serratus_M_contig1370.2730.1|organism=Fucus serratus male|type=CDS|length=3870bp|location=Sequence derived from alignment at F-serratus_M_contig1370:234924..237074- (Fucus serratus male)
ATGAAGCACTCGGGTCTAGGCGGGAACAACTACGTCGTCTTTTTTGTGGA
CGACTGCACCCGCTTTAAGGTGGTGAAGTTCGCGAAGAAGAAGAGTGACA
CAACGGCTGCTGTCTTGTCTCTGATGAAGCACTCGGGTCTAGGCGGGAAC
AACTACGTCGTCTTTTTTGTGGACGACTGCACCCGCTTTAAGGTGGTGAA
GTTCGCGAAGAAGAAGAGTGACACAACGGCTGCTGTCTTGTCTCTGAAGC
TGTCGATCAAGTGCATACGGACGGATAATGGTGGCGAGTTTGAGGGAGAA
TTTCAGCGCGAATTGGACCGGTGCAGCATCACGCACGAGCATATCCCGCC
AGGCACGCCGCAGAACAATGGGGTGGCCGAACGTGCGTTTAGGCTTTTGA
GAGAAAAGACGATCATCCTGATGGAGGAGCTAGACGACGTCATCAACGTG
CCGCGAGAGAAGCTATGGGCTCAGGCAATGCTTTTCGCGTGCGACGTCAC
CAACAAGTCAGTCACAACGTCAACGAATGAGGGTAAGTCGCCGTATGAAC
TGTGGTTCGGAAATTCCCCTACTGCCAATCATTTGCGACCGTTTGGAGCG
GTGGGATACGCGCGACAGAGCGTGCGTGAACATAAGATGGCGCCAAAAGG
GGAGAAATGCGTGTTCGTGGGAATTCCCCGAAACTTCTCCACTGGCACGG
TAAGCGTGCTACTCGTAAGGTCAAGAAATGTCGTGGAAAGGCAGGCCGTG
CAGTGGATCGACGGGCCTAGAAAGACAGGGAGTGACGGGACCGGCAGTGA
GGACCGCGAAGCTGTCGATCAAGTGCATACGGACGGATAATGGTGGCGAG
TTTGAGGGAGAATTTCAGCGCGAATTGGACCGGTGCAGCATCACGCACGA
GCATATCCCGCCAGGCACGCCGCAGAACAATGGGGTGGCCGAACGTGCGT
TTAGGCTTTTGAGAGAAAAGACGATCATCCTGATGGAGGAGCTAGACGAC
GTCATCAACGTGCCGCGAGAGAAGCTATGGGCTCAGGCAATGCTTTTCGC
GTGCGACGTCACCAACAAGTCAGTCACAACGTCAACGAATGAGGGTAAGT
CGCCGTATGAACTGTGGTTCGGAAATTCCCCTACTGCCAATCATTTGCGA
CCGTTTGGAGCGGTGGGATACGCGCGACAGAGCGTGCGTGAACATAAGAT
GGCGCCAAAAGGGGAGAAATGCGTGTTCGTGGGAATTCCCCGAAACTTCT
CCACTGGCACGGTAAGCGTGCTACTCGTAAGGTCAAGAAATGTCGTGGAA
AGGCAGGCCGTGCAGTGGATCGACGGGCCTAGAAAGACAGGGAGTGACGG
GACCGGCAGTGAGGACCGCGGGGAGACGCAAGGGGCGTTATCAGAACATG
AGAAGGATACGCAGGAGGCGCGTTTGGAAGACGAGCGCGAGCAGGAGCGT
GAGAAAGGGGGATCGGAAGCGGCATCAGGGTCGGCAAGTTTGGAGAGACC
GACCGTATCCGCGCTGGGAGACGCAAGGGGCGTTATCAGAACATGAGAAG
GATACGCAGGAGGCGCGTTTGGAAGACGAGCGCGAGCAGGAGCGTGAGAA
AGGGGGATCGGAAGCGGCATCAGGGTCGGCAAGTTTGGAGAGACCGACCG
TATCCGCGCTTCGGAGACCCCACACCAGTGTGGAGGGGGAAGCGTTGCAC
TGTTTCTGGCCGCCGATCAAGGCCGAAGAGGAAGACGGCGTGGAGGATGT
GTTGGCATGCGACGACGGGAGCCAGATGGCTATGCAAGCGACGCTAGACG
TACCGGAACCGAGAAATCGGCGACAGGACGAATGGCGGAAGGCAGAAGAG
ACTGAGATGCTTGGAATGGTCGAGAACTGCGTTTATAAGCAGGTGGCTCG
GCCGAAGGACAAGCTCGTGATCGGCACAAAAATGTTATACAAGCGAAACG
TCGGACAGGATGGCAAGGTCGAGAAGTACAAGTGTCGACTTGTCGCTCAA
GGGTTCTGGCAGGTGAAAGGTGTGCACTACACGGAAAAGTCTTCGCCCAC
GCCATCAACCGCGTCAATCCGGATGCTTTTGGCGACGGCAGCGGCGAAGG
ATGGAGAGCTACGCCATTTCGACGCAGAGCAGGCATTTTTGAAGGCGGAT
ATTAACGAAGAAATATACATTGAGATCCCCGAGGAGTTCCAGGAGTTTCC
GGGGGCAGTGGGACGGCTTAATAAGGCCATTTACGGATTCGTGCAGGCGG
GGAGGTGCTGGAATAATAACTTCTGTGACGACATGACGGCGATTGGATTC
GAGCAGGCAAAAGCGAACTCGTGCGTGTTCCCCAAGGTCGTTGACGGTGT
GGCGGAGATGGTGGTGGTCATACACGTAGACGACATCCTTGCCCACGCCA
AAGACCAAGCGACGATGGATGGATTCGTGGCCGAGCTTGGGCAGAAGTTT
AGATTGAAGGATATGGGGGACGCTGAGTACTACATGGGTTGTCACATCAC
CAGGAACCACAAGGCGCGCGAGTTGAAGTTTGGCCAACACCTGTACGTGG
AGTCTCTGGTAAAGATGTTTGACGTCAAGAAGGAAGCTAAGATACCGGCT
GCGTCGGGGGTGCCGACGCTCTCAAAGGCAGATGAACCGCGGAACCCAGA
GGAGAAGGAAGAAATGAAGAAGTTCCCGTACCGAGAGGCAGTGGGGGCGC
TCATGTGGACGGCAACGGTGACACGGCCGGATATTGCGTGCGCCGTACGC
GCCGTGGACAGGTTCTCGGAGACCCCACACCAGTGTGGAGGGGGAAGCGT
TGCACTGTTTCTGGCCGCCGATCAAGGCCGAAGAGGAAGACGGCGTGGAG
GATGTGTTGGCATGCGACGACGGGAGCCAGATGGCTATGCAAGCGACGCT
AGACGTACCGGAACCGAGAAATCGGCGACAGGACGAATGGCGGAAGGCAG
AAGAGACTGAGATGCTTGGAATGGTCGAGAACTGCGTTTATAAGCAGGTG
GCTCGGCCGAAGGACAAGCTCGTGATCGGCACAAAAATGTTATACAAGCG
AAACGTCGGACAGGATGGCAAGGTCGAGAAGTACAAGTGTCGACTTGTCG
CTCAAGGGTTCTGGCAGGTGAAAGGTGTGCACTACACGGAAAAGTCTTCG
CCCACGCCATCAACCGCGTCAATCCGGATGCTTTTGGCGACGGCAGCGGC
GAAGGATGGAGAGCTACGCCATTTCGACGCAGAGCAGGCATTTTTGAAGG
CGGATATTAACGAAGAAATATACATTGAGATCCCCGAGGAGTTCCAGGAG
TTTCCGGGGGCAGTGGGACGGCTTAATAAGGCCATTTACGGATTCGTGCA
GGCGGGGAGGTGCTGGAATAATAACTTCTGTGACGACATGACGGCGATTG
GATTCGAGCAGGCAAAAGCGAACTCGTGCGTGTTCCCCAAGGTCGTTGAC
GGTGTGGCGGAGATGGTGGTGGTCATACACGTAGACGACATCCTTGCCCA
CGCCAAAGACCAAGCGACGATGGATGGATTCGTGGCCGAGCTTGGGCAGA
AGTTTAGATTGAAGGATATGGGGGACGCTGAGTACTACATGGGTTGTCAC
ATCACCAGGAACCACAAGGCGCGCGAGTTGAAGTTTGGCCAACACCTGTA
CGTGGAGTCTCTGGTAAAGATGTTTGACGTCAAGAAGGAAGCTAAGATAC
CGGCTGCGTCGGGGGTGCCGACGCTCTCAAAGGCAGATGAACCGCGGAAC
CCAGAGGAGAAGGAAGAAATGAAGAAGTTCCCGTACCGAGAGGCAGTGGG
GGCGCTCATGTGGACGGCAACGGTGACACGGCCGGATATTGCGTGCGCCG
TACGCGCCGTGGACAGGTTC
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