mRNA_F-serratus_M_contig137.2729.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig137.2729.1
Unique NamemRNA_F-serratus_M_contig137.2729.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig137.2729.1 vs. uniprot
Match: D8LH89_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH89_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 2.270e-37
Identity = 74/112 (66.07%), Postives = 87/112 (77.68%), Query Frame = 1 
Query:    4 KFTAIFLALWAMCASAFIAPSAVVKSRRFVTPEVRSTSSTVAPKTTMNMGLEQIVDIVPMVPTEAHDQVLEIANNPLLLSLTASSFGGLTGPIAGCTAVALLIVVLAPPRVD 339
            K  A+  AL+  CASAFIAPSAV KS  F TP VR+TS  VAPK  M MGLEQI D++P+VP+EAH+   E+ANNPLLLS++A SFGGL GPI GC AVA+ IVV+APPRVD
Sbjct:    4 KLFAVLFALYCACASAFIAPSAV-KSGSFATPAVRATSM-VAPK--MTMGLEQIADVLPLVPSEAHNAGFEMANNPLLLSVSADSFGGLIGPIGGCLAVAIFIVVMAPPRVD 111
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig137.2729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH89_ECTSI2.270e-3766.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig137contigF-serratus_M_contig137:620179..624846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size342
Cds size342
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929353.869544-CDS-F-serratus_M_contig137:620178..6202511622929353.869544-CDS-F-serratus_M_contig137:620178..620251Fucus serratus maleCDSF-serratus_M_contig137 620179..620251 +
1690962812.6683748-CDS-F-serratus_M_contig137:620178..6202511690962812.6683748-CDS-F-serratus_M_contig137:620178..620251Fucus serratus maleCDSF-serratus_M_contig137 620179..620251 +
1622929353.926297-CDS-F-serratus_M_contig137:624577..6248461622929353.926297-CDS-F-serratus_M_contig137:624577..624846Fucus serratus maleCDSF-serratus_M_contig137 624578..624846 +
1690962812.677504-CDS-F-serratus_M_contig137:624577..6248461690962812.677504-CDS-F-serratus_M_contig137:624577..624846Fucus serratus maleCDSF-serratus_M_contig137 624578..624846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig137.2729.1prot_F-serratus_M_contig137.2729.1Fucus serratus malepolypeptideF-serratus_M_contig137 620179..624846 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig137.2729.1

>prot_F-serratus_M_contig137.2729.1 ID=prot_F-serratus_M_contig137.2729.1|Name=mRNA_F-serratus_M_contig137.2729.1|organism=Fucus serratus male|type=polypeptide|length=114bp
MKFTAIFLALWAMCASAFIAPSAVVKSRRFVTPEVRSTSSTVAPKTTMNM
GLEQIVDIVPMVPTEAHDQVLEIANNPLLLSLTASSFGGLTGPIAGCTAV
ALLIVVLAPPRVD*
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mRNA from alignment at F-serratus_M_contig137:620179..624846+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig137.2729.1 ID=mRNA_F-serratus_M_contig137.2729.1|Name=mRNA_F-serratus_M_contig137.2729.1|organism=Fucus serratus male|type=mRNA|length=4668bp|location=Sequence derived from alignment at F-serratus_M_contig137:620179..624846+ (Fucus serratus male)
ATGAAATTCACGGCCATTTTTCTTGCCTTGTGGGCCATGTGTGCTAGTGC
CTTCATCGCCCCTTCCGCCGTCGGTGAGTCCAACAATTCCCTATCAAACA
TGTCTTTCGACCGCAGTCCTATATGAGCGGAAGGCCTCACGATTGCTGCG
CCGTTCATGTACATGCGCCATCGCTGCAAAGCCCGAGAGAAGGGAAAATC
GGTATCGTGATGTTCAGTCTCACCCTTATAGCGTCTCAACCTCGATTAAC
ATATATCTGTGCTGAATAGATCGTTCGCTGGGGTCTAATCGAAATGTGTA
ACCAGTATGTCAGATAGGTTGTTGACGTCGAAGCCGAGCGGACCTGCTGT
GGGATGAGACAGAGGCAAGTAGGCGTTAGTCTACAGCATGAGTTGGAGCG
CTCCTGTTCGGTCCGCGTATGCCGCCTTCGGCATAATTGGTCTCGGTCTG
TGGATTCGACTGCAGTCGATGTCACGATAATGTTCTTGGCGTGGTTTGGT
TAGCATTTGCTCCGTGTTTCTGTCGTACGTCTTGATGGGTATATTGTACA
AATCCCTCCTTTTCATCTACAGTAGAACGACCTCGAAACAGCCTCGAAAT
ACAGTACTGTGTACAGTATCGTTGTCCTCAACTTGGGTGTCAAGGATGGC
ACATGTGGTTACGCATCTCTTATCCTGTAATACTGTAAGTCTCTAGTGTC
GATGCTCCTGAGTATACTATTATTAGTGTTCGTGGGTATAGAGTAATTGT
GTTCTGTTATGTCGCCGGTACTTCCAACATGCCCACTTCATCCCACATCA
TAAGTGGGTGTGGGAAAGAGAGGCGCATATTAATTGGTGCATGGTGACCC
GCCGAGGCAGCACTCGTTCGAAACTACCTTACTGGTATATTTTACTGGCT
CTGTGCTGGCGGACTCTCGGCAGTGAACGTCATCGGTACGCAATTGCGTG
ACCTGATAAACTGGGGACTGACCCGATGGCGTATGGCGGTTTAAATAAAT
AAATGGACGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCCA
ATTCAGCTTGAGTATGGAGATGAGCAGGCTGACGCGGGACGGGACTGCCA
GAGCTGTCTCGCGAGACCAAATTCTCAGGCGCGAACGCGAACAGGGAAAT
ATTCATTTTTCCTGTTCAGCTGACCACGTGCAGGATTGGCAACCTTATCC
GGTCGATCATACTCTTGCTATAACAGCCCTCTCATTTTTCACGCCCAGGT
TGAGCGTCGAGAACTGTAGCATGTTGGTGCTGCAGTTGTTGGCTACTGTA
CATGGATTGAAAGTTAGATGCTGTGCGCACAGTAAAAAACACAAAAATCA
ACATACACATGAAACATACACCTGGTACTGGCACATGACCGTACACATCA
ACAGACATAGAAACAGACACAGACCATAAGAGCAACATCGACAAACACGA
AGACATGAGGGAAGAGGGAACATCTCCGCAGCGATTTCGTTGCTCAGACA
CGTCCCGCAGCCCCTTGTTTTGATGCGATGAAGTTCTAATTGCAGTGCAC
TCCTGATTCAGCTTTGACACAGCCTCTGACACTATTAATAGATACCATTA
GTGGGTGTGGAGAAAGAGAGGCTCACATCAAATTGTCCATGGTGATACCT
GAACAGCTAGTACCCGTTACTGGAACTACCTTGAGGTTTACTGGCCCGAT
GCCGGCGGACTCTAGGCTGTGAATGCCATCGGTACGCAATTCGTGACCTG
ATCAACTCTTGACTGACCCGATGGCGTAAGGCGATATAAATAAATAAATG
GACGCCGTCGCGGAAAGCGGGAGAAATCCCGCGAGTAAGCCCCAGACATT
CAGCCGGAGTGTGGAGAATGAGCGGGCGAGGATCGATCCCAAAGCTCCTG
TCCTCTAATTTGGCATGAGTCCATTTGTTTGAACTAATAATAATTTATTT
GACTAAAAGAACTACCAGGTATTATAGATAGTTTCGAAATGCCCTTGAAA
AACTCGTATTTTGTCTCAAGACAGCAACATCCGGCCTTGATACGGATCTT
AAAGTGTCGTACAGATACAGTACCTGTTCCGTACTGAACCTGGTAGTAAA
TCCAATTGCTGGCTTCATTTCATGTTGATCTTGATCTTTTCATATTTTAG
AGCTAGTCTATGCTATTAATACCATCGAACGTGAAAATGTCTTCGTAATT
TGACATGCTCCTTTATTAATATTCATATCAACTCTTATATTAATTGTTAA
AGACCCATGTGTCCTTATCACCTCTATTACTGCTGTGTCTCTCGTACAAA
GCTTGCAAGGTTGTGTTGAGTCGAGTACTACTCATCGCGTACTCGAGTAT
TCTACTCGAGTATGTACTCGACTCAACATACTCATAGCTTGAGTACCGCT
TTCCATACTCGACTCAAAATACTCATAGCTTGAGTACCGCTTTCCATACT
CGACTCAAAATACTCATAAAGCTTGAGTACCGCTTTCCATACTCTACTCG
AGTATGAGTACGGTATCGGGCAAATACTCAACGATGAGTCGAGTATCGAG
TATGACTTTCCATACTCGACTCAAAATACTCAAAGCTTGAGTACAACTTC
CCATACTCGACTCAAAATACTCAAAGCTTGAGTACAACTTCCCATACTCG
ACTCAAAATACTCAAAGCTTGAGTACAACTTCCCATACTCGACTCAACAT
ACTCATAGCTTGAGTACAACTTTCCATACTCTACTCGAGTATGAGTACGG
TATCGGGCAAATACTCAACGATGAGTCGAGTATCGAGTATGACTTTCCAT
ACTCGACTCAAAATACTCAAAGCTTGAGTACAACTTTCCATACTCGACTC
AAAATACTCAAAGCTTGAGTACAACTTTCCATACTCGACTCAAAATACTC
AAAGCTTGAGTGCCGCTTTCAATACTCTACTCTAAATACTCTACTCGACT
CAACACAACCGTGAAAGCTTGCCAAGTTGCTGTTCAATGCTTGCTTCGCT
GCTGTCACGACAAAATAGCATAGATGATATCATTAGATGATAGCGTATAC
TTGTTAGCTTCTTAAATGATATCATTAGATCATAGGGGGGCTGAATCAAG
ACCACGGACGGTAACCTGTACGAATTCAGTTCAATTCAGATTCATTTCAT
GGAATTCACATGTTTGCTGCAATATCATTTTTTTAAAAGGAGTTCGCTGC
AACCGAGAGATGTATGTGGCTCTGTTGCACCACTTTTATCCCGCACAACC
ATCACTTGTGAGACCACTTCTACCTACACCCCCCCATCGCCCTCTGAGCC
TCTTCGCCCTATCATGGTATTAGTTGTCGTGGGTACCGATGTTTGGCCTC
TGGAAGAACTTTAACAGCCCTAGCCATCCCACAAAAACTCTAAAGTTCTA
GGGCTAGGGCTCGAACCTTGATTTGCTCATGTCCTCATGTCCTTGTGGGG
CTGTCTCATCAAGGGCTATTACTACACGAATGTTCTTGATTTCGGAAATA
CGGTTGCGATCCGAGCATTGACTCTGGGAAACGTGGGTCAAGTTTACCTC
CAGCCCGAAGCATAAGTATCTCTCGTTAGCCTGTCGACGCGGCAAGATCG
CACATTTTTTAGTGCACATTTAGTCTAGCCTTTTTTCATCTCGGTAATGA
AGTCGATTGCATGCTCCGTTTCACTTGAAGCGGTGTTGAAATCACCTCGC
CCTTCCCTCCCCCCAAAAGTACATCATTATTACATTATTACACTTATATA
TATTACTGTGCTACAGTACTACGCTATACTACACGTTACTATGCCAGGTA
CAAACTCGTATATACACCCTGTGAGGATGGCTTGAAATCGTCCAGTAACC
ATGTATTTCTAGACTGGAAATCCATATGCTTTGTCTTATGTCAAAACCTC
GCAATTTTCGAGCAAAGTCCCCCATCAGGCGTTGTTATCGATGCAGTTTA
GTGTACTGTAGGAAGAGATCATTTATTCAGTTTAGTGTATGTAATGTAAT
GCAATATGCGAAATTATTATATCGTTCCTTGCAGTCAAACTTCAAACTTA
CACCGTTTTGTGCCACTCCAAGCCTTCTCTTGGCACGTTTCTCATCATAC
GGCAATCCTATACAGGACCTCTTGTAATCCCTAGTTTTTCATATTGGTTG
CCATCCTACCGAAAGATGCCCCTTGCTTTTTAACTTTTTCACGTTACAGT
ACTCGTGTATCACATTACATTGCACTGCATTACAGTAAAGTATTTTCCGT
CCAAGGAAACGAGTCCGGATACTGTAGCAGGCAGCTAGCTATCTATCTAT
CAATAGGTTTCTTGTGTTTCCAGAAACAAATGCGAACGACACTATTTCCT
TTTTCCTTTCCCTTTTTTCCATTCCCTGCTTGTTCTACCATGATGACAGT
CAAGTCCAGGCGTTTCGTTACCCCCGAGGTGCGCTCTACCTCCTCCACCG
TCGCGCCCAAGACGACCATGAACATGGGCCTGGAGCAGATCGTGGACATA
GTGCCGATGGTGCCGACGGAGGCGCACGACCAGGTGCTCGAGATCGCGAA
CAACCCGCTGCTGCTCTCGCTGACTGCGAGCTCTTTCGGAGGATTGACCG
GCCCCATCGCCGGGTGCACTGCAGTAGCCCTCTTGATCGTCGTCTTGGCG
CCCCCGCGTGTAGACTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig137:620179..624846+

>mRNA_F-serratus_M_contig137.2729.1 ID=mRNA_F-serratus_M_contig137.2729.1|Name=mRNA_F-serratus_M_contig137.2729.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig137:620179..624846+ (Fucus serratus male)
ATGAAATTCACGGCCATTTTTCTTGCCTTGTGGGCCATGTGTGCTAGTGC
CTTCATCGCCCCTTCCGCCGTCGATGAAATTCACGGCCATTTTTCTTGCC
TTGTGGGCCATGTGTGCTAGTGCCTTCATCGCCCCTTCCGCCGTCGTCAA
GTCCAGGCGTTTCGTTACCCCCGAGGTGCGCTCTACCTCCTCCACCGTCG
CGCCCAAGACGACCATGAACATGGGCCTGGAGCAGATCGTGGACATAGTG
CCGATGGTGCCGACGGAGGCGCACGACCAGGTGCTCGAGATCGCGAACAA
CCCGCTGCTGCTCTCGCTGACTGCGAGCTCTTTCGGAGGATTGACCGGCC
CCATCGCCGGGTGCACTGCAGTAGCCCTCTTGATCGTCGTCTTGGCGCCC
CCGCGTGTAGACTAATCAAGTCCAGGCGTTTCGTTACCCCCGAGGTGCGC
TCTACCTCCTCCACCGTCGCGCCCAAGACGACCATGAACATGGGCCTGGA
GCAGATCGTGGACATAGTGCCGATGGTGCCGACGGAGGCGCACGACCAGG
TGCTCGAGATCGCGAACAACCCGCTGCTGCTCTCGCTGACTGCGAGCTCT
TTCGGAGGATTGACCGGCCCCATCGCCGGGTGCACTGCAGTAGCCCTCTT
GATCGTCGTCTTGGCGCCCCCGCGTGTAGACTAA
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