mRNA_F-serratus_M_contig137.2720.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig137.2720.1
Unique NamemRNA_F-serratus_M_contig137.2720.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig137.2720.1 vs. uniprot
Match: D8LH60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH60_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 9.100e-21
Identity = 40/69 (57.97%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:   10 ALVLLHKEIIEISTRCRLVQERKKEALEDMWSRLEDVIVILWPGARVIPYGSFASGMMTPGSDVDLVVF 216
            ++V+LH+EI++ + RCR VQE++K  LE++W R+EDVI +LWP   V+PYGS+A GMMTP SDVD++VF
Sbjct:  306 SMVILHEEILDFAARCRDVQEKRKRVLENLWRRIEDVICLLWPDTVVVPYGSYACGMMTPESDVDIMVF 374
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BLAST of mRNA_F-serratus_M_contig137.2720.1 vs. uniprot
Match: A0A6H5KRM2_9PHAE (NTP_transf_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRM2_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 9.700e-20
Identity = 39/69 (56.52%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:   10 ALVLLHKEIIEISTRCRLVQERKKEALEDMWSRLEDVIVILWPGARVIPYGSFASGMMTPGSDVDLVVF 216
            ++V+LH+EI++ + RCR VQE++K  LE++W R+EDVI +LW    V+PYGS+A GMMTP SDVD++VF
Sbjct:   36 SMVILHEEILDFAARCRDVQEKRKRVLENLWRRIEDVICLLWRDTVVVPYGSYACGMMTPESDVDIMVF 104
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BLAST of mRNA_F-serratus_M_contig137.2720.1 vs. uniprot
Match: A0A7S1UHK0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHK0_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 9.290e-8
Identity = 30/82 (36.59%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:    4 KAALVLLHKEIIEISTRCRLVQERKKEALEDMWSRLEDVIVILWPGARVIPYGSFASGMMTPGSDVDLVVFHTGGREGDVTN 249
            + AL  LH EI+E +  C       K   + + ++L + +  +W G+R+  YGS+ + +MTPGSDVD+VV  T   E + TN
Sbjct:   55 EGALKRLHTEIVEFADACVKRMSDLKPLHDFVVAKLGEAVASMWVGSRIYSYGSYVTQLMTPGSDVDIVVIATHLLEDEYTN 136
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BLAST of mRNA_F-serratus_M_contig137.2720.1 vs. uniprot
Match: A0A7S3CDI1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CDI1_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 2.220e-7
Identity = 30/71 (42.25%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:   13 LVLLHKEIIEISTRCR-LVQERKKEALEDMWSRLEDVIVILWPGARVIPYGSFASGMMTPGSDVDLVVFHT 222
            L+ LH+EI+E +   +   QER+K   +D  +R+++VIV LWP ARV  +GS+ +G+  P SD+D+VV ++
Sbjct:  184 LLRLHQEIVEFAKFLQPTAQERRKR--QDAIARVKEVIVSLWPSARVEVFGSYETGLYLPTSDIDMVVLNS 252
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BLAST of mRNA_F-serratus_M_contig137.2720.1 vs. uniprot
Match: A0A835YGT1_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YGT1_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 4.330e-7
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:   13 LVLLHKEIIEISTRCRLVQERKKEALE--DMWSRLEDVIVILWPGARVIPYGSFASGMMTPGSDVDLVVFHTG 225
            L+ LH+E++E+   C L+Q   +EA    D  + + +VI  LWP A  + +GSFA+G+  P SDVDLVV  +G
Sbjct:  243 LLRLHQEVLEL---CELLQPTPEEAQARADAVAAVSEVIKQLWPSAECVVFGSFATGLYVPTSDVDLVVLGSG 312
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BLAST of mRNA_F-serratus_M_contig137.2720.1 vs. uniprot
Match: A0A388LRQ5_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LRQ5_CHABU)

HSP 1 Score: 55.5 bits (132), Expect = 5.840e-7
Identity = 24/63 (38.10%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:   19 LLHKEIIEISTRCRLVQERKKEALEDMWSRLEDVIVILWPGARVIPYGSFASGMMTPGSDVDL 207
            LLH EI++ + R  + +  ++  + D   ++  V++ LWPG  V+ +GSFA+G+  PGSD+DL
Sbjct:    9 LLHYEILQYAARLEMTEAERRRRV-DALHKIRKVVLELWPGVEVVEFGSFATGLSLPGSDLDL 70
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BLAST of mRNA_F-serratus_M_contig137.2720.1 vs. uniprot
Match: A0A835WNC0_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WNC0_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 5.920e-7
Identity = 29/77 (37.66%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 MKAALVLLHKEIIEISTRCRLVQERKKEALEDMWS--RLEDVIVILWPGARVIPYGSFASGMMTPGSDVDLVVFHTG 225
            +++ L+ LH+E++E+   C LVQ   +EA     +   + +V+  +WP ARV  +GS+A+G+  P SDVDLV+  +G
Sbjct:  286 IESPLLRLHQELVEL---CELVQPTPEEAAARAGAVAAVREVVSTIWPAARVEVFGSYATGLYVPTSDVDLVILDSG 359
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BLAST of mRNA_F-serratus_M_contig137.2720.1 vs. uniprot
Match: A0A0M0JUQ5_9EUKA (Nucleotidyltransferase family protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JUQ5_9EUKA)

HSP 1 Score: 54.3 bits (129), Expect = 6.000e-7
Identity = 22/37 (59.46%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:  103 SRLEDVIVILWPGARVIPYGSFASGMMTPGSDVDLVV 213
            S++  V+ +LWP A+V P+GSFA+G+M PGSD+DLVV
Sbjct:   41 SKVRSVVTLLWPRAQVKPFGSFATGLMRPGSDIDLVV 77
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BLAST of mRNA_F-serratus_M_contig137.2720.1 vs. uniprot
Match: A0A2K3CQA0_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CQA0_CHLRE)

HSP 1 Score: 54.7 bits (130), Expect = 1.110e-6
Identity = 29/77 (37.66%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 MKAALVLLHKEIIEISTRCRLVQERKKEALEDMWS--RLEDVIVILWPGARVIPYGSFASGMMTPGSDVDLVVFHTG 225
            +++ L+ LH+E++E+   C LVQ   +EA     +   + +V+  +WP ARV  +GS+A+G+  P SDVDLV+  +G
Sbjct:  274 IESPLLRLHQELVEL---CELVQPTPEEAAARAGAVAAVREVVGSIWPSARVEVFGSYATGLYVPTSDVDLVILDSG 347
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BLAST of mRNA_F-serratus_M_contig137.2720.1 vs. uniprot
Match: A0A8J4BYD0_9CHLO (Uncharacterized protein n=4 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4BYD0_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 1.470e-6
Identity = 28/73 (38.36%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   13 LVLLHKEIIEISTRCRLVQERKKEAL--EDMWSRLEDVIVILWPGARVIPYGSFASGMMTPGSDVDLVVFHTG 225
            L+ LH+E++E+   C LVQ   +EA+   D  + + +V+  +WP AR   +GS+A+G+  P SD+DLV+ ++G
Sbjct:  228 LLRLHQELVEL---CELVQPTPEEAVARRDAVAVVTEVVRSIWPQARCEVFGSYATGLYVPTSDIDLVILNSG 297
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig137.2720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH60_ECTSI9.100e-2157.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRM2_9PHAE9.700e-2056.52NTP_transf_2 domain-containing protein n=1 Tax=Ect... [more]
A0A7S1UHK0_9STRA9.290e-836.59Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3CDI1_9CHLO2.220e-742.25Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A835YGT1_9CHLO4.330e-742.47Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A388LRQ5_CHABU5.840e-738.10Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A835WNC0_9CHLO5.920e-737.66Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A0M0JUQ5_9EUKA6.000e-759.46Nucleotidyltransferase family protein n=1 Tax=Chry... [more]
A0A2K3CQA0_CHLRE1.110e-637.66Uncharacterized protein n=2 Tax=Chlamydomonas rein... [more]
A0A8J4BYD0_9CHLO1.470e-638.36Uncharacterized protein n=4 Tax=Volvox reticulifer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig137contigF-serratus_M_contig137:507710..509409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue2.2e-17
Seed eggNOG ortholog2880.D8LH60
KEGG koko:K03514
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Exons3
Model size261
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig137.2720.1prot_F-serratus_M_contig137.2720.1Fucus serratus malepolypeptideF-serratus_M_contig137 507710..509409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929352.102684-CDS-F-serratus_M_contig137:507709..5077621622929352.102684-CDS-F-serratus_M_contig137:507709..507762Fucus serratus maleCDSF-serratus_M_contig137 507710..507762 +
1690962811.7942944-CDS-F-serratus_M_contig137:507709..5077621690962811.7942944-CDS-F-serratus_M_contig137:507709..507762Fucus serratus maleCDSF-serratus_M_contig137 507710..507762 +
1622929352.118729-CDS-F-serratus_M_contig137:508538..5086951622929352.118729-CDS-F-serratus_M_contig137:508538..508695Fucus serratus maleCDSF-serratus_M_contig137 508539..508695 +
1690962811.810024-CDS-F-serratus_M_contig137:508538..5086951690962811.810024-CDS-F-serratus_M_contig137:508538..508695Fucus serratus maleCDSF-serratus_M_contig137 508539..508695 +
1622929352.1347396-CDS-F-serratus_M_contig137:509358..5094091622929352.1347396-CDS-F-serratus_M_contig137:509358..509409Fucus serratus maleCDSF-serratus_M_contig137 509359..509409 +
1690962811.8179817-CDS-F-serratus_M_contig137:509358..5094091690962811.8179817-CDS-F-serratus_M_contig137:509358..509409Fucus serratus maleCDSF-serratus_M_contig137 509359..509409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig137.2720.1

>prot_F-serratus_M_contig137.2720.1 ID=prot_F-serratus_M_contig137.2720.1|Name=mRNA_F-serratus_M_contig137.2720.1|organism=Fucus serratus male|type=polypeptide|length=87bp
MKAALVLLHKEIIEISTRCRLVQERKKEALEDMWSRLEDVIVILWPGARV
IPYGSFASGMMTPGSDVDLVVFHTGGREGDVTNRCED
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mRNA from alignment at F-serratus_M_contig137:507710..509409+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig137.2720.1 ID=mRNA_F-serratus_M_contig137.2720.1|Name=mRNA_F-serratus_M_contig137.2720.1|organism=Fucus serratus male|type=mRNA|length=1700bp|location=Sequence derived from alignment at F-serratus_M_contig137:507710..509409+ (Fucus serratus male)
ATGAAGGCGGCGCTAGTCCTTTTGCACAAGGAAATAATCGAGATTTCAAC
AAGGTTGGTTAGCTCTCTGCATGACGTCTTTACGTGGAGTCTTTGCATCC
TATGAAAACAGTACGACTTTCTCGAAGAGTCTGTAAGAGATCACGTGGTA
TTAATTAACAATTGGAATGTAGTGTAGTGTAGTGTAGTGTAGTGTTGGAG
AGTTGCTTACAGGTACAGGTACCGCATCAAGAACCAACCATCGTGCGATG
CGTATTTTCTGAGTTTGTCAGTTTGTCACTTTTGATAACTTTTGTTGGAT
GGGCAGCACATCAATCAATCAGACATGACAGTCTTCTCTACAGCTTGTAA
TTCAGATTCTCAAACACCGTTACTATTACTGTAATAGCAGCACATCATAC
TCCAGACAGTAGAAACCGTAGTTCGTCGCCAAGGACATCGTCTTGACGCC
GGTAAGTTTCCGATGTTCTCGATTGGTTGGGCCTGGCAAGGATTTTGTAT
TTGGATCCCTGTTGATCTGAATAGCGGGTTGTCACCAAACCCGTTGACCT
TCGTACCTCGCTGTGACCATGAACGGGATTGGCATTTGGTAGGTCTGTGG
CTGACTGGAACCAGTAGCTTTTTCAGTTGCAAGGACAATGCGCTGAATGT
GTGAATCAATCAACAGCAACAACGATTCCCGTTCGGTTCTCGTTGACTCT
AATAAATCATCTTCTAGAGCTTGAATGCTTGAATTGCCGTCTCTATTAAT
AGTACCTGGTAGTAGTATTAAATGTATGTTATAATTGTTATGTGGTCGTT
ATCGTGACTGTTGATATGATAAAGTAAAGGTGTCGCCTAGTGCAGGAAAG
GAAAAAGGAGGCGCTTGAAGACATGTGGTCTCGTCTTGAAGACGTCATCG
TTATCTTGTGGCCAGGCGCTCGTGTTATCCCTTACGGGAGCTTCGCCTCC
GGCATGATGACGCCTGGCTCGGACGTGGATCTCGTGGTGAGTATCATATG
AGTATAATAACTATTACTACTGGTAACTTTTAATACCTCTGACCTGTACA
GCTGTAGTATCTTATCATGAGGACGATGGGTAAAGCGTAGGATATTATTT
ATTATGATATCCTGAACACTGTACTGTAGTGTCTAGTGTAGTGTAGTGTA
GTGTACAGCGCCGGTAGTAGTAGGTCGCCTTACCATTCCATTTTCGGGGA
ATCTCTGTGATAACCGTTCGGACCTTGATGCCTTCGGACAATTACGTTAT
TACAAATGGCACGGCATGTTCTACAGCTCTTGTATCACTTAACGTATCTC
TTGATGTATCACTCATCATTAATAATACCATAATAAGACTCTTCCGTGAA
AGCATTGAATGTGCGATCGCGATCTTTTCTTGTTGACGATAAACACCTGT
TTCCATTGTATTTGACGGTGGACGACTGTGTGGTGTTTGTGGGGATTTGA
GAGAACATCTTGTCTTGACTAATAATATGCGACAAGTGGTGTCGTCCCCC
TTGCTGCTCTTGCGCACGTATGGTTTGAAAAAGCCGTAAGAATAATAATA
TGCTTAGACTAGTACTTTGTACTAATGTCAATACTTGTGCACCTTTCTTG
TTATAAATGTATAGCTCTAATGCAAAATGTATAATGTATCGTGTATCAGG
TTTTTCATACAGGCGGGCGAGAGGGTGACGTTACGAATCGCTGTGAAGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig137:507710..509409+

>mRNA_F-serratus_M_contig137.2720.1 ID=mRNA_F-serratus_M_contig137.2720.1|Name=mRNA_F-serratus_M_contig137.2720.1|organism=Fucus serratus male|type=CDS|length=522bp|location=Sequence derived from alignment at F-serratus_M_contig137:507710..509409+ (Fucus serratus male)
ATGAAGGCGGCGCTAGTCCTTTTGCACAAGGAAATAATCGAGATTTCAAC
AAGATGAAGGCGGCGCTAGTCCTTTTGCACAAGGAAATAATCGAGATTTC
AACAAGGTGTCGCCTAGTGCAGGAAAGGAAAAAGGAGGCGCTTGAAGACA
TGTGGTCTCGTCTTGAAGACGTCATCGTTATCTTGTGGCCAGGCGCTCGT
GTTATCCCTTACGGGAGCTTCGCCTCCGGCATGATGACGCCTGGCTCGGA
CGTGGATCTCGTGGTGTCGCCTAGTGCAGGAAAGGAAAAAGGAGGCGCTT
GAAGACATGTGGTCTCGTCTTGAAGACGTCATCGTTATCTTGTGGCCAGG
CGCTCGTGTTATCCCTTACGGGAGCTTCGCCTCCGGCATGATGACGCCTG
GCTCGGACGTGGATCTCGTGGTTTTTCATACAGGCGGGCGAGAGGGTGAC
GTTACGAATCGCTGTGAAGACGTTTTTCATACAGGCGGGCGAGAGGGTGA
CGTTACGAATCGCTGTGAAGAC
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