mRNA_F-serratus_M_contig137.2705.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig137.2705.1
Unique NamemRNA_F-serratus_M_contig137.2705.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig137.2705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig137contigF-serratus_M_contig137:148278..149302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size860
Cds size858
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929347.5378284-CDS-F-serratus_M_contig137:148277..1486771622929347.5378284-CDS-F-serratus_M_contig137:148277..148677Fucus serratus maleCDSF-serratus_M_contig137 148278..148677 -
1690962809.3841507-CDS-F-serratus_M_contig137:148277..1486771690962809.3841507-CDS-F-serratus_M_contig137:148277..148677Fucus serratus maleCDSF-serratus_M_contig137 148278..148677 -
1622929347.5561152-CDS-F-serratus_M_contig137:148844..1493021622929347.5561152-CDS-F-serratus_M_contig137:148844..149302Fucus serratus maleCDSF-serratus_M_contig137 148845..149302 -
1690962809.394255-CDS-F-serratus_M_contig137:148844..1493021690962809.394255-CDS-F-serratus_M_contig137:148844..149302Fucus serratus maleCDSF-serratus_M_contig137 148845..149302 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig137.2705.1prot_F-serratus_M_contig137.2705.1Fucus serratus malepolypeptideF-serratus_M_contig137 148278..149302 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig137.2705.1

>prot_F-serratus_M_contig137.2705.1 ID=prot_F-serratus_M_contig137.2705.1|Name=mRNA_F-serratus_M_contig137.2705.1|organism=Fucus serratus male|type=polypeptide|length=286bp
GCIHLGESLPDTAVRGLERISLSNATEVILRTLPSLYQPEFDGVPKVGVT
TVGRISQHGAIRNSSRVTHPLAGSTGNSTAERGNPACPSPKTPTAGTCVT
PTAPTQQAESPRSVVLLHPLATATHTPRTTTSEGGVGFKGSGSEDGLRKA
VRRRSLVGPYLGRKGEANCRVPSGASVFSAEDMSAGNIQRRKIRVATSQK
CAATAAALKVANKLGEGQHLDAASDNHGRGEKYAQSKASVEMPLYDRAGS
NHRRSEGEVTMHLNTPSQRKQVRPGAAKASPSSRCR
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mRNA from alignment at F-serratus_M_contig137:148278..149302-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig137.2705.1 ID=mRNA_F-serratus_M_contig137.2705.1|Name=mRNA_F-serratus_M_contig137.2705.1|organism=Fucus serratus male|type=mRNA|length=1025bp|location=Sequence derived from alignment at F-serratus_M_contig137:148278..149302- (Fucus serratus male)
GGTTGCATCCATTTGGGGGAGTCGCTGCCGGATACCGCTGTGAGGGGCTT
GGAAAGGATATCTCTATCAAACGCTACTGAAGTTATTTTGAGAACTCTTC
CTAGTTTGTATCAGCCTGAATTCGACGGAGTACCTAAAGTGGGTGTCACG
ACCGTCGGGAGGATTAGTCAACACGGCGCAATCCGCAATTCCTCGAGAGT
CACACACCCGTTGGCCGGCAGCACTGGTAACTCTACGGCCGAAAGAGGCA
ACCCCGCATGCCCTTCGCCGAAGACACCGACGGCAGGAACTTGCGTCACA
CCCACGGCCCCAACCCAACAAGCCGAAAGCCCACGATCAGTTGTGTTACT
GCATCCTCTGGCCACTGCCACACACACTCCGCGTACCACAACCTCTGAGG
GCGGCGTCGGCTTCAAAGGAAGCGGTTCAGAGGACGGTCTGCGGAAAGCC
GTAAGGAGGTGACTTTTGTTTAGCGAAAGTTCAGTTTAGTACAGTGTGAA
TGCATTTCCGGTTGAACCATAAAATTTTCTCGAGCCGAATATGTTCGCGT
GTAAACTGCGCGAGGGTCTCCCGTAACCATGCCCTACTGCCCGCGCAAAT
TCGCCGACACACGTTCTGGGAGCAGGCGGAGCCTCGTAGGGCCCTACCTC
GGGCGCAAGGGGGAGGCGAACTGCCGCGTTCCATCTGGAGCGAGCGTGTT
CTCAGCCGAGGACATGTCCGCTGGTAATATCCAGCGGCGTAAAATCAGAG
TTGCAACGTCGCAGAAGTGCGCAGCTACTGCGGCTGCCCTGAAGGTGGCT
AACAAATTAGGGGAGGGACAGCATCTTGATGCGGCCTCAGACAACCATGG
ACGCGGCGAAAAATACGCGCAATCGAAGGCTTCGGTTGAGATGCCCCTCT
ATGACCGTGCTGGGAGCAACCACCGCAGATCTGAGGGAGAAGTGACTATG
CACTTGAACACTCCGAGTCAGCGTAAGCAAGTACGACCGGGAGCTGCCAA
AGCGTCACCGTCGTCGAGGTGCCGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig137:148278..149302-

>mRNA_F-serratus_M_contig137.2705.1 ID=mRNA_F-serratus_M_contig137.2705.1|Name=mRNA_F-serratus_M_contig137.2705.1|organism=Fucus serratus male|type=CDS|length=1716bp|location=Sequence derived from alignment at F-serratus_M_contig137:148278..149302- (Fucus serratus male)
GGTTGCATCCATTTGGGGGAGTCGCTGCCGGATACCGCTGTGAGGGGCTT
GGAAAGGATATCTCTATCAAACGCTACTGAAGTTATTTTGAGAACTCTTC
CTAGTTTGTATCAGCCTGAATTCGACGGAGTACCTAAAGTGGGTGTCACG
ACCGTCGGGAGGATTAGTCAACACGGCGCAATCCGCAATTCCTCGAGAGT
CACACACCCGTTGGCCGGCAGCACTGGTAACTCTACGGCCGAAAGAGGCA
ACCCCGCATGCCCTTCGCCGAAGACACCGACGGCAGGAACTTGCGTCACA
CCCACGGCCCCAACCCAACAAGCCGAAAGCCCACGATCAGTTGTGTTACT
GCATCCTCTGGCCACTGCCACACACACTCCGCGTACCACAACCTCTGAGG
GCGGCGTCGGCTTCAAAGGAAGCGGTTCAGAGGACGGTCTGCGGAAAGCC
GTAAGGAGGGTTGCATCCATTTGGGGGAGTCGCTGCCGGATACCGCTGTG
AGGGGCTTGGAAAGGATATCTCTATCAAACGCTACTGAAGTTATTTTGAG
AACTCTTCCTAGTTTGTATCAGCCTGAATTCGACGGAGTACCTAAAGTGG
GTGTCACGACCGTCGGGAGGATTAGTCAACACGGCGCAATCCGCAATTCC
TCGAGAGTCACACACCCGTTGGCCGGCAGCACTGGTAACTCTACGGCCGA
AAGAGGCAACCCCGCATGCCCTTCGCCGAAGACACCGACGGCAGGAACTT
GCGTCACACCCACGGCCCCAACCCAACAAGCCGAAAGCCCACGATCAGTT
GTGTTACTGCATCCTCTGGCCACTGCCACACACACTCCGCGTACCACAAC
CTCTGAGGGCGGCGTCGGCTTCAAAGGAAGCGGTTCAGAGGACGGTCTGC
GGAAAGCCGTAAGGAGGCGGAGCCTCGTAGGGCCCTACCTCGGGCGCAAG
GGGGAGGCGAACTGCCGCGTTCCATCTGGAGCGAGCGTGTTCTCAGCCGA
GGACATGTCCGCTGGTAATATCCAGCGGCGTAAAATCAGAGTTGCAACGT
CGCAGAAGTGCGCAGCTACTGCGGCTGCCCTGAAGGTGGCTAACAAATTA
GGGGAGGGACAGCATCTTGATGCGGCCTCAGACAACCATGGACGCGGCGA
AAAATACGCGCAATCGAAGGCTTCGGTTGAGATGCCCCTCTATGACCGTG
CTGGGAGCAACCACCGCAGATCTGAGGGAGAAGTGACTATGCACTTGAAC
ACTCCGAGTCAGCGTAAGCAAGTACGACCGGGAGCTGCCAAAGCGTCACC
GTCGTCGAGGTGCCGGGCGGAGCCTCGTAGGGCCCTACCTCGGGCGCAAG
GGGGAGGCGAACTGCCGCGTTCCATCTGGAGCGAGCGTGTTCTCAGCCGA
GGACATGTCCGCTGGTAATATCCAGCGGCGTAAAATCAGAGTTGCAACGT
CGCAGAAGTGCGCAGCTACTGCGGCTGCCCTGAAGGTGGCTAACAAATTA
GGGGAGGGACAGCATCTTGATGCGGCCTCAGACAACCATGGACGCGGCGA
AAAATACGCGCAATCGAAGGCTTCGGTTGAGATGCCCCTCTATGACCGTG
CTGGGAGCAACCACCGCAGATCTGAGGGAGAAGTGACTATGCACTTGAAC
ACTCCGAGTCAGCGTAAGCAAGTACGACCGGGAGCTGCCAAAGCGTCACC
GTCGTCGAGGTGCCGG
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