mRNA_F-serratus_M_contig1369.2694.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1369.2694.1
Unique NamemRNA_F-serratus_M_contig1369.2694.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1369.2694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1369contigF-serratus_M_contig1369:125440..131820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size171
Cds size171
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929346.2977147-CDS-F-serratus_M_contig1369:125439..1255241622929346.2977147-CDS-F-serratus_M_contig1369:125439..125524Fucus serratus maleCDSF-serratus_M_contig1369 125440..125524 -
1690962809.022762-CDS-F-serratus_M_contig1369:125439..1255241690962809.022762-CDS-F-serratus_M_contig1369:125439..125524Fucus serratus maleCDSF-serratus_M_contig1369 125440..125524 -
1622929346.3173418-CDS-F-serratus_M_contig1369:131734..1318201622929346.3173418-CDS-F-serratus_M_contig1369:131734..131820Fucus serratus maleCDSF-serratus_M_contig1369 131735..131820 -
1690962809.0317302-CDS-F-serratus_M_contig1369:131734..1318201690962809.0317302-CDS-F-serratus_M_contig1369:131734..131820Fucus serratus maleCDSF-serratus_M_contig1369 131735..131820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1369.2694.1prot_F-serratus_M_contig1369.2694.1Fucus serratus malepolypeptideF-serratus_M_contig1369 125440..131820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1369.2694.1

>prot_F-serratus_M_contig1369.2694.1 ID=prot_F-serratus_M_contig1369.2694.1|Name=mRNA_F-serratus_M_contig1369.2694.1|organism=Fucus serratus male|type=polypeptide|length=57bp
MVTTENYLHGPNQKWALDFSQTKHIAFDLNETRGVKRISSYTLQTEQVGV
HTTLKSS
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mRNA from alignment at F-serratus_M_contig1369:125440..131820-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1369.2694.1 ID=mRNA_F-serratus_M_contig1369.2694.1|Name=mRNA_F-serratus_M_contig1369.2694.1|organism=Fucus serratus male|type=mRNA|length=6381bp|location=Sequence derived from alignment at F-serratus_M_contig1369:125440..131820- (Fucus serratus male)
ATGGTTACTACAGAGAATTATCTGCACGGCCCAAACCAGAAGTGGGCGTT
AGATTTCTCTCAAACTAAACATATTGCATTCGACTTGCAAACAGCGGCGA
AAGTTCAAACAACGGATTTTTGCGCGAATCAAAAGCAGTGACGTACTATT
GTAACTACTGCATAAAACCACGACCGCACGATAACAGTACCGAAACGACC
TCCCGTTACTATTCTATAGCCAAGATGAGATCCTCGCAGACCCACACAGA
GTACTTCCTATGGTCCCAGCGCCGGATTCATCAGTATCATAGTACAGTAC
CAAACACTCTTCCGTTATCTGTTTATGCCCAATCAAATGAAATCCTCGCA
GACCCAAAACGAAAACACTTCCTACGGTCCCAGCGTTGGATTCATCATTA
CAAATATCGGCCCACCGGTACTATCTTGGCCGGCCAATTTCTCGAAGATG
GGACGGTCTTCTGTCAGCGTGCCGTCCGTAAGCGTCTTCTACGCTGAACT
GGGAGAGGATGTTCTTGATCTTGCGCTCGAGGCTCGAAGTCTACCTGTCA
AAACAAATTATACTGTATGGGAAATTTTCGAATCCAGAAACAAAACCACG
CGCAAGACATTTTGCAATAATGGACACTGTCGTCAATCAGAACTGTCGTT
CGATCCTCAGTTTCTCGTCCATTTTGTAGTTGTCTGTAACTCGATCACAC
ACCTTCATCATGACACCCTTTTTCAAAAGGAAAGTCAGAAGGAGATGAAA
TGCCGATGGGTGCTGCTCTCGTGAGCATACCCTTTTAAAACGGCTACCCG
CGGTATCAACTTGTCACCGAGTAGTCCGTGGGCGCTAAGTAACACGTAGC
CCACCCAAGCCCAAACCTCGGGCTTGAAGCGTCAGTTATCCTCAGTAAGC
TGTACGCTGGTGATGTCTTTCGTGGCCATAAACCACTAGTCCCAGAAAAA
GGGAACTTAACCCATAGTCTAGCTGGGGTCAAGAATGTTCAACTCCGCAT
GTTGTCGCTTGCAAGCGGAGAATGGTCTGTGCATCAGCCAGAACCAAAAT
CAAGTGTTCGTCGTTTCATTTTTGGTTGGTTGCCACAGCCTTCGTTTCAT
AGTAGAGTAACTTGACTGGCTTCCCAGTACCTATTTTTGGAAATTCCGTA
TCGTGTCCATTTTTTTGTGGTTACGGCAAAACGCTACGCCCCTTTCATTG
ACTTCTCGATCCGATGGCCTCCTCGAGATGCTCGGCTAACATTCGTCTGG
TGATATTGTAGCCCTGACGCTAACCAGCGATCAATAAGCCAGTTGACGTT
TTTCGCTTACTGAAGAAGTAATTCTTTACCGTTATCAGTTGCTGGAGTGG
ATCACTATTATCTTGTTGTTGTTGTTGTTTTCTTGTCTCAATCAACACTC
TGATTAATCACGCATATTTTCAGAGATGCGTTGCTCAAGCGTTTGCTGGT
AGTATTTTCGCCCTAGGTTAGAATTGTTCTTGTGTACAGCAATAATGCGA
GAATTCATCTCGGCATCTACCGTAAAATGATCTCCCCCTCTGGACTACGA
ACAAGAGGGCATCGCTCAGCGTCCTCCGTTCCTATCACGTTCGATTACCT
ATGGCTTTTGTCAGCTTCGACGCCCGGCACGTCCGTGATATTCATTTTCT
GCCATTACGGCAACTTACGGCTCCAATACTGTGTTGACCGTATTGAATGG
TTTCTCTGTGGTCACATTTGCAACCAACTGGAATGGTTTTTTCTGTGGTC
ACATTCAGTGTAGTAAATCGTCAGGCGGATTTTACCCACGTTTTTGCAAC
CCAGCTCCTCCTGGCTATATTTGTTCGTACGGTCGCAACAACGTGGACCA
TTAAACAGGATATATTTTTCAGAATCGAGACCGTAGCCTTTTTCAGCTTC
GTCCTTCTTACTTTTACCCTTGTATTGGCTCTGGCCAACACTATTCTTCT
TCCCCAATTCGGGGTTGAGACATTACGATAGAGTCTTTCCAAGACTGTTT
TATGTTGTCTCTGTCATGGATATTAGCATCCACGGCAGCCCTAATGTTGT
GTCAGTTATTTTTTTGTTTCAACACCGGTGTTTCATTATGGGGCGCCTTT
CTTTCTCCTATCTCCCTCAAGGTTGCCTGATGCATTGCTTGAGTGAAGCG
TTTTAAATCGTCTGGCACTTTATTGCCAGAAGAGCGCTCAAGGTTGTTTT
TCGATTGATCAGATCATGCATACCTTGTCTATGCTCTGATGATGCGGCGA
TAATAGCGGTCCGCCTATCTTTTTGCCTTTCAGCTATCCGCGATCCTCCC
TCCCAACTTAGAGGGTGGTCAATCCTACGTAAGCTTGAAGTTCGAATGTT
GGTATTAACTGTATCATCTCTCTTTGTAGGCATGGTCGCGACGGAGACTA
TTGCTCCTCGCATGCCACTCGCGGAGTCGATTCTCACTCGTTTCATCTTG
CCCCCGAGCCTGACCAATGACCAGGAAGCGATCTGAAAACAGACTTTGAA
ACTGGCTCCTTTGCCTGATTATTATTTTATTTTATTTTTGCCAGGTCATC
CCACAAGCCAATGTGCTGTCCTGCCAAAAAAGGATGTTTATTATTTAGGG
ATATGGATCAATGTCCTCCTTACTTTTCACCCTTATGTTCTGTACTAGAC
TTGTTTCGGAATTCAGTCTAGACCGATGTAACTTCAAGCGTGCCGTTAGT
TCCTATAGACTGCACACTGAATTTTGCAGTACTTGTAGCTTGAGTAACGA
GCGAACAGGGAGAGCCTATACTTCCGCTGAACTTATTCACTCGTATTAGT
CGCTTGTTGTACTTTCGAGTCACGAATATTCTCCGTGCTTTTACCATGTC
CTCGGCACGGTTCATTTCATCCTGTCCTCTGACATGTTGTTGTCTCGTCG
GATTATCACACATTATTTCAAAAGTGTGCCGACATTGAAAAGGAGCAAAT
CTTTCGACGCATTGACTGCAGGCTAGTACAGTTTCTTTATCGCTATTCAT
TTGCATCGCTCTGTTGTGTATCAGACATTATGTTTCCAGTTTCATCTCGT
CTGAAGCAACGGATCACTCGATTTGAGTTTTTCAGTGACGTTGTGATGTC
GTTTCGTTTTTTTCTCTTCCACACATATGGCAGCACCCAATGTATTGTCA
TACGGTAAGGGCTCGATTCATATGTGCCCCCTAGGGAGTGGGGTATGGCT
CGCGTCTTCGTTACGCGCTTTTGTCGTTTTGGTACCATCGGGAAGCTCCT
CATTCCCTTACCCTCGAGGTTAACTCGTGCAGAGCTCGAGTGGGTCATTT
AACACCTGAGTCTGGATGCTCAGGCAAGCTCCCAAAATTTTTTGAGCTGA
TCAGGCCTTCCCAATTTTGGTTTCGCTCCGGTTTCATCTTACCTTTTTTG
AATATGGCTGGCGACATTGATCGGTCGTACTGCTGGTCGCGTGCCATACG
CCTTCGATTGACGCTCGAAGTGTCTGCTTTGCCGACTGCGTTCGACGAGC
GGTTTGTAATCAGAAATAAGAGCACGTCTAATTTCTTTATTTTTGTATCG
CTATCTTTCCCATCCAAGGTTAATCTATTCAGAGCTTGGATTGAGCATTT
CCGCGATGTTTCCTGGTCTAGCCTTTGCATAGAGCGTCTCAAAATCTCAT
CATTTTGAGTTCGCCCAGGTGATAGTTCGTCGTCATCACCTTCTTACAGC
TACCAGTAGCTTGCAATTCATCGCATGCCACTGTCTTTTCTGTAATGCGC
ATTGCGCCGGTCTCCACTTTTTCTATACGTTGTATACGAGTCGGAGATGT
AGTTTCGTCTGTTGATAGACATTTCTGCGAACATTCTGTGAGAGATCAAC
CGCAGTCACACCTGCCCGGTTGCCATGTGTTATTGTTCGACTTGTAGTAC
CTTCGATTGCTACTGGCGAGACAGAAGGTAACATCCCATCATCGGATTGT
ATGTTGGTTCTAGATCACTAGAATTGGGAGTCTTCACAAAGTTCTTGGTT
GTAACTGTTGTCACTGCCACTTCCAACCTATCACTGCTTTGACGACTTGT
AGCATTTTCAGCGGAATTACTTTTCGGCGTGTGCTCGGAGTTTATTTTTG
ACCTATTAGGAGTTGTTCGCCCAACTGACTCTTTCTCAGGTTCGGCACGC
AATTCTCCGATATTGCTGTCCGTAAGGCCGCTATTGTCTAGGAATGGCTT
GGGGCATATTCGCATGTTGCTGAACGTAGCGGGCTTGGTTTTGGGGTCAG
AACGTCGCGCTAGCAATGGCGGCTCGCCATCCTTTTGAATGTTATACCCA
GTACCCCATGTCTCGATTAGAGCTGACCACGAAGGAAAATCTGCTTTGGA
AATTTTCACGTTTATGACCGATTCGTGTCCCGACCCACACTTTATCTTTG
TTTTAAAGAGGGTCGCACGGACCAAATTCTGCAGTAGTACGTCCCCGACT
GCCTGTTGCAGTCCTTGGGAGAAGCTCTCCATGTGATCCCATAGGTCCTT
CAGAATAGCTGCTTCGATGTCCGCCAGCTCCGGAAAACCGTTCCTCCAGG
AAAAGTCATTTTCCACAACCCAAACTAGCTCCGCGATGGCTCTCTGGGCT
GTCAGATCCATTCGCTCCTGGCACTGAGCTGACCCGAGCTCCCGCAGAGA
GTGGAATTTCCATTCGCTCAAAGTGTTGAATTTGTCGATGAATTTGGCTA
TTTTATCCCATGGCCGGGGCGTCCACCTACGTCCCTGGGCGTAACGGCGC
TCCGACTGGGAGCCCACCCAAGCTGATACCTCCGCTCTTGCCGCCTTAAG
TGGCTGCCGCGGCCAGTCCTGATGAATCGTGGGCCCAATTTCTTGGTCCG
ATCTTGCTTTCTCCACTAAGCCCTCCTGAGCCTGTTTGGCCAGCGCTCTG
CGAACTCTGGAGATGCCTTCTTCAAGCACTCTGGTGGATTCCTCAGCCTC
CGCGATGGTGGTCGGATGGACCAGGCGATAAGCCTGCCATAATTTCGACT
GAATTATTTCGCGTAGCCCAATCCAGTGCTCCAGGCCCAAAGTAAAATCC
GGCGGAGGTCTCAACTCCGTAGAGCCTCGCGCTGTGGACATTTGTCCCAT
CAAATTGTCTGAGCCTCCCATTTGGCTCACTGACGTATCCGGGATCAAGG
GCGTATGCCCTGTTGCAGCCTTTGAAAGTTCCTCCCTGCATTGCCCTCTA
CGCTCAACGGCGTCTGTGAAGTCGCGGTGTTTTTCCCGCTGCGCAGTTCT
CGGAGGCCCTTCCTCGCTGCCTATACTTGGAATCAAGGGCATTTGCCCTG
TTGCAGTCTCTGAGGGTTCCCCCCTGCATTGCCCTCTACGCTCGATGGCG
TCTGTGAAGTCGCGGATTTCATCCCGCTGCGCAGTTCTCGGAGGCCCTTC
CTCGCTGCCTATACTCAGAATCAAGGACATGTGCCCTGTTGCAGTCTCTG
AGGGTTCTCCCCTGCATTGCCCTCTACGCTCGACGGCGTCTGTGAAGTCG
CGGATTTTATCCCGCTGCGCAGGTCTTGGAGGCCCTTCCTCACTGCCCAT
ACTCGTGCCCATTCTAACTGCGGTCATCCCTTTCCTCTCTGATGTTCTCC
GGGTATAATTTATCAAGCAAATGAAGTGTCCCTCGATCGAGACTCGCTTT
CCTCGATGGTCCTCAAAGCGATTGAAGTGTCCCTCTATCGAGATTCGCTT
TCCCTGATGACCCTCAAAGCGACTGAAGTGTCCCTCTATCGAGACTCGCT
TTCCCTGATGGCCCTCAAAGCGACTGAAGTGTCCCTCGATCGAGACTCGC
TCTTTCCTGATGATCCTCAAAGCGACTGAAGTGTCCCTCTATCGAGACTC
GCTTTCCCTGATGGCCCTCAAAGCGAATGAAGTGTCCCTCGATCGAGACT
CGCTTTCCTCGATGACCCTCAAAGCGATTGAAGTGTCCCTCGATCGAGAC
TCGCTTTCCTTGATGATCCTCAAAGCGATTGAAGTGTCCCTCTATCGAGA
CTCGCTTTCCCTGATGACCCTCAAAGCGACTGAAGTGTCCCTCTATCGAG
ACTCGCTTTCCCTGATGGCCCTCAAAGCGACTGAAGTGTCCCTCGATCGA
GACTCGCTTTTTTTCCAGAGAACGGCCTGACCACCGTCCTACCGTCGACG
CCAAATTGTTATGGAGTTATCCAACTCCCTGTAGATTCTTTGACGGTGGT
ATGTGTCTCGCTCAGGAGACCAGGCGAAGGATGGATGTATAAAAAGGTAT
CTTCGTTAACTTTCGTCCCTTGAAGTACCTACCGACTTACTCGTAGAAAT
GAAACACGAGGAGTCAAACGTATATCAAGTTACACGTTGCAGACTGAACA
GGTGGGGGTTCACACCACCCTAAAATCAAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1369:125440..131820-

>mRNA_F-serratus_M_contig1369.2694.1 ID=mRNA_F-serratus_M_contig1369.2694.1|Name=mRNA_F-serratus_M_contig1369.2694.1|organism=Fucus serratus male|type=CDS|length=342bp|location=Sequence derived from alignment at F-serratus_M_contig1369:125440..131820- (Fucus serratus male)
ATGGTTACTACAGAGAATTATCTGCACGGCCCAAACCAGAAGTGGGCGTT
AGATTTCTCTCAAACTAAACATATTGCATTCGACTTATGGTTACTACAGA
GAATTATCTGCACGGCCCAAACCAGAAGTGGGCGTTAGATTTCTCTCAAA
CTAAACATATTGCATTCGACTTAAATGAAACACGAGGAGTCAAACGTATA
TCAAGTTACACGTTGCAGACTGAACAGGTGGGGGTTCACACCACCCTAAA
ATCAAGCAAATGAAACACGAGGAGTCAAACGTATATCAAGTTACACGTTG
CAGACTGAACAGGTGGGGGTTCACACCACCCTAAAATCAAGC
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