mRNA_F-serratus_M_contig1367.2682.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1367.2682.1
Unique NamemRNA_F-serratus_M_contig1367.2682.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1367.2682.1 vs. uniprot
Match: A0A6H5KFW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFW4_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.870e-8
Identity = 30/57 (52.63%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:    1 HHIYHECLFSSSQH-----------RSEACRTIAFGLMKDLATGCRPNVAVQLKFLL 138
            HH+YHECLF  + H           RSE CR  AFGL+ DLAT CR NVAV +  LL
Sbjct: 2593 HHVYHECLFDIATHDNHGPLAPPKCRSEGCRANAFGLLTDLATDCRANVAVLIDLLL 2649
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BLAST of mRNA_F-serratus_M_contig1367.2682.1 vs. uniprot
Match: D7FK75_ECTSI (Ubiquitin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK75_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 2.880e-8
Identity = 30/57 (52.63%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:    1 HHIYHECLFSSSQH-----------RSEACRTIAFGLMKDLATGCRPNVAVQLKFLL 138
            HH+YHECLF  + H           RSE CR  AFGL+ DLAT CR NVAV +  LL
Sbjct: 1363 HHVYHECLFDIATHDNHGPLAPPKCRSEGCRANAFGLLTDLATDCRANVAVLIDLLL 1419
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1367.2682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFW4_9PHAE2.870e-852.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK75_ECTSI2.880e-852.63Ubiquitin domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1367contigF-serratus_M_contig1367:193824..194976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue4e-14
Seed eggNOG ortholog2880.D7FK75
KEGG koko:K11840,ko:K11853,ko:K11869
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons2
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929345.5972085-CDS-F-serratus_M_contig1367:193825..1940481622929345.5972085-CDS-F-serratus_M_contig1367:193825..194048Fucus serratus maleCDSF-serratus_M_contig1367 193826..194048 -
1690962808.7013636-CDS-F-serratus_M_contig1367:193825..1940481690962808.7013636-CDS-F-serratus_M_contig1367:193825..194048Fucus serratus maleCDSF-serratus_M_contig1367 193826..194048 -
1622929345.6073327-CDS-F-serratus_M_contig1367:194932..1949761622929345.6073327-CDS-F-serratus_M_contig1367:194932..194976Fucus serratus maleCDSF-serratus_M_contig1367 194933..194976 -
1690962808.7153351-CDS-F-serratus_M_contig1367:194932..1949761690962808.7153351-CDS-F-serratus_M_contig1367:194932..194976Fucus serratus maleCDSF-serratus_M_contig1367 194933..194976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1367.2682.1prot_F-serratus_M_contig1367.2682.1Fucus serratus malepolypeptideF-serratus_M_contig1367 193826..194976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1367.2682.1

>prot_F-serratus_M_contig1367.2682.1 ID=prot_F-serratus_M_contig1367.2682.1|Name=mRNA_F-serratus_M_contig1367.2682.1|organism=Fucus serratus male|type=polypeptide|length=89bp
HHIYHECLFSSSQHRSEACRTIAFGLMKDLATGCRPNVAVQLKFLLGYYS
ATSRCKSPGASGLSSIGVERASWEYAPRENGRASCGYVG
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mRNA from alignment at F-serratus_M_contig1367:193824..194976-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1367.2682.1 ID=mRNA_F-serratus_M_contig1367.2682.1|Name=mRNA_F-serratus_M_contig1367.2682.1|organism=Fucus serratus male|type=mRNA|length=1153bp|location=Sequence derived from alignment at F-serratus_M_contig1367:193824..194976- (Fucus serratus male)
CACCATATCTACCACGAGTGCCTGTTCTCTTCCAGCCAGCACAGGTACGG
CTCTCTAGGGGCCCCTAGGTTCAGGTGTGGATGTGGGATTTTTTATTACA
TTGTACATGATTGCGCAATCCGGCACTGTCACCCTAGTCGTTCTACGCTA
CCCGCATTAGCGTTTCTCTTTTTAGCCTTTTGGCGTTACTATTTTTAGCC
TTTTTTTCAAACTTTTCACAAGAGTTTTCTGAAGGATCAAACTATATAGA
GCTATTGTACTATATACCCCCCCCCTCCTTCCTCATGTTCAAGTCTACGG
CACCAGTATACTCTGTAGTTCATTCTGTACACCTCGTCGACCAATCGTAA
TCATGGTTGAGGTTTGCTTTCTCACCCTCTCACACTTCTCTACGCCAAAA
CCACATGATAGTACTTGAGCATTCATCCCTACGTGAGTCGAACTCCTCTA
GCACTTTGGGAGCAAGACCGGGTCCTCAACTGACAAGAATAGGCCACTCC
CGGCCACAAAACACACACACACACACACATTATCGCGAGAGAGCCATGAT
AAGTTGGGCTTGCCCGGCGATACATTAAAAATAAAAAAAGTAAAAAATGT
CATAGGCTTTTGGCAGGTAGGGGCAGCAGATCGGATTATGTACTTGCCAT
TTTGGCTCAGTAGGTTTTGCTCCACTCGTCAGAATGAGCGAAAAACTGAT
GGAAAAAAGGTGTGTACTCGAGCCTTATCTAGTCATGGTCTACGTTGTCC
TCAACACCGCTGCTATGTCATGCTTTTCATAACCCCACTCCCCTCCCATC
CCATGCTCTCGCCAAAACATAACATAACAGCTGATGCACGCTTTTTTTTC
ACGTCATAGTCCACGCAGTCCTGTCATGCCGCTCCCTCCATCTATCTCTC
AACAAAACACACACACACACACACACAGGTCAGAGGCATGCAGGACAATA
GCGTTCGGGTTGATGAAAGATCTGGCCACGGGCTGTCGCCCCAATGTGGC
TGTCCAACTCAAGTTCCTCCTGGGCTACTATTCGGCCACGTCCCGGTGCA
AGAGCCCCGGCGCTTCGGGGCTTTCCTCAATCGGGGTCGAGCGCGCGTCC
TGGGAGTACGCGCCTCGGGAAAACGGCAGGGCTAGCTGTGGGTACGTTGG
GCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1367:193824..194976-

>mRNA_F-serratus_M_contig1367.2682.1 ID=mRNA_F-serratus_M_contig1367.2682.1|Name=mRNA_F-serratus_M_contig1367.2682.1|organism=Fucus serratus male|type=CDS|length=534bp|location=Sequence derived from alignment at F-serratus_M_contig1367:193824..194976- (Fucus serratus male)
CACCATATCTACCACGAGTGCCTGTTCTCTTCCAGCCAGCACAGCACCAT
ATCTACCACGAGTGCCTGTTCTCTTCCAGCCAGCACAGGTCAGAGGCATG
CAGGACAATAGCGTTCGGGTTGATGAAAGATCTGGCCACGGGCTGTCGCC
CCAATGTGGCTGTCCAACTCAAGTTCCTCCTGGGCTACTATTCGGCCACG
TCCCGGTGCAAGAGCCCCGGCGCTTCGGGGCTTTCCTCAATCGGGGTCGA
GCGCGCGTCCTGGGAGTACGCGCCTCGGGAAAACGGCAGGGCTAGCTGTG
GGTACGTTGGGGTCAGAGGCATGCAGGACAATAGCGTTCGGGTTGATGAA
AGATCTGGCCACGGGCTGTCGCCCCAATGTGGCTGTCCAACTCAAGTTCC
TCCTGGGCTACTATTCGGCCACGTCCCGGTGCAAGAGCCCCGGCGCTTCG
GGGCTTTCCTCAATCGGGGTCGAGCGCGCGTCCTGGGAGTACGCGCCTCG
GGAAAACGGCAGGGCTAGCTGTGGGTACGTTGGG
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