mRNA_F-serratus_M_contig1362.2668.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1362.2668.1
Unique NamemRNA_F-serratus_M_contig1362.2668.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1362.2668.1 vs. uniprot
Match: A0A7S1XMB5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XMB5_9STRA)

HSP 1 Score: 147 bits (370), Expect = 9.580e-42
Identity = 75/111 (67.57%), Postives = 86/111 (77.48%), Query Frame = 1
Query:    1 STIFFDEIDSLAGCRGSGGEHEASRRVKTELLVQMDGISAEAG---------GGDSLNRVVVLAATNTPWDLDEALRRRLEKRIYIPLPTETGRKELFRINLGGVEVCSTV 306
            STIFFDEID+LAG RG+  EHEASRRVKTEL+VQMDG+S  AG         GG +   V+VLAATN PWDLDEALRRRLEKRIYIPLP+ TGRK+LF+IN+  VE+   V
Sbjct:   64 STIFFDEIDALAGSRGNANEHEASRRVKTELMVQMDGVSEAAGARDEDGDGDGGATNKTVIVLAATNMPWDLDEALRRRLEKRIYIPLPSATGRKQLFQINMREVELAEDV 174          
BLAST of mRNA_F-serratus_M_contig1362.2668.1 vs. uniprot
Match: F0Y1I1_AURAN (AAA domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1I1_AURAN)

HSP 1 Score: 139 bits (351), Expect = 2.210e-38
Identity = 72/109 (66.06%), Postives = 83/109 (76.15%), Query Frame = 1
Query:    1 STIFFDEIDSLAGCRGSGGEHEASRRVKTELLVQMDGISAEAG------GGDSLNR-VVVLAATNTPWDLDEALRRRLEKRIYIPLPTETGRKELFRINLGGVEVCSTV 306
            ST+FFDEIDSLAG RG   EHEASRRVKTEL+VQMDG++  +G      G ++  R V+VLAATNTPW+LDEALRRRLEKRIYIPLPT  GR  LF IN+  V+V   V
Sbjct:  116 STVFFDEIDSLAGQRGGANEHEASRRVKTELMVQMDGVAGGSGDAPEDAGAEAAPRTVIVLAATNTPWELDEALRRRLEKRIYIPLPTAAGRAALFEINMKSVDVADDV 224          
BLAST of mRNA_F-serratus_M_contig1362.2668.1 vs. uniprot
Match: UPI000D731441 (LOW QUALITY PROTEIN: katanin p60 ATPase-containing subunit A1-like n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D731441)

HSP 1 Score: 142 bits (358), Expect = 4.710e-38
Identity = 73/103 (70.87%), Postives = 81/103 (78.64%), Query Frame = 1
Query:    1 STIFFDEIDSLAGCRGSGGEHEASRRVKTELLVQMDGISAEAGGGDSLNRVVVLAATNTPWDLDEALRRRLEKRIYIPLPTETGRKELFRINLGGVEVCSTVH 309
            STIF DEIDS+   RGS  EHEASRRVK+ELLVQMDG+S  +  GD+   V+VLAATN PWDLDEALRRRLEKRIYIPLPT  GRK L  INL  VE+ STV+
Sbjct:  307 STIFIDEIDSICSKRGSDNEHEASRRVKSELLVQMDGVSGSSEDGDTSKAVMVLAATNFPWDLDEALRRRLEKRIYIPLPTADGRKTLLDINLKEVELESTVN 409          
BLAST of mRNA_F-serratus_M_contig1362.2668.1 vs. uniprot
Match: A0A8J1XK99_OWEFU (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XK99_OWEFU)

HSP 1 Score: 142 bits (357), Expect = 7.940e-38
Identity = 67/103 (65.05%), Postives = 82/103 (79.61%), Query Frame = 1
Query:    1 STIFFDEIDSLAGCRGSGGEHEASRRVKTELLVQMDGISAEAGGGDSLNRVVVLAATNTPWDLDEALRRRLEKRIYIPLPTETGRKELFRINLGGVEVCSTVH 309
            STIF DEIDS+   RGS  EHE+SRRVK+E+L+QMDG+S   GG D+ N V+VLAATN PWD+DEALRRRLEKRIYIPLP   GR++L ++NL  VE+  TV+
Sbjct:  322 STIFIDEIDSICSKRGSDSEHESSRRVKSEILIQMDGVSGAVGGDDASNLVIVLAATNFPWDIDEALRRRLEKRIYIPLPDADGREQLLKLNLREVELSETVN 424          
BLAST of mRNA_F-serratus_M_contig1362.2668.1 vs. uniprot
Match: A0A835I599_9MAGN (AAA domain-containing protein n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A835I599_9MAGN)

HSP 1 Score: 136 bits (343), Expect = 9.920e-38
Identity = 69/104 (66.35%), Postives = 81/104 (77.88%), Query Frame = 1
Query:    1 STIFFDEIDSLAGCRGSGGEHEASRRVKTELLVQMDGISAEAGGGDSLNRVV-VLAATNTPWDLDEALRRRLEKRIYIPLPTETGRKELFRINLGGVEVCSTVH 309
            STIF DEIDSL   RG+ GEHE+SRRVK+ELLVQ+DG++  + G D   ++V VLAATN PWD+DEALRRRLEKRIYIPLP    RKEL RINL  VEV + V+
Sbjct:   76 STIFIDEIDSLCNSRGASGEHESSRRVKSELLVQVDGVNNSSTGDDGARKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAADVN 179          
BLAST of mRNA_F-serratus_M_contig1362.2668.1 vs. uniprot
Match: UPI001E1DE20D (katanin p60 ATPase-containing subunit A1-like isoform X2 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DE20D)

HSP 1 Score: 140 bits (354), Expect = 1.870e-37
Identity = 71/102 (69.61%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    1 STIFFDEIDSLAGCRGSGGEHEASRRVKTELLVQMDGISAEAGGGDSLNRVVVLAATNTPWDLDEALRRRLEKRIYIPLPTETGRKELFRINLGGVEVCSTV 306
            STIF DEIDS+   RGSG EHEASRRVK+ELL+QMDG++    G DS   V+VLAATN PWDLDEALRRRLEKRIYIPLPT  GR EL +INL  V + S V
Sbjct:  311 STIFIDEIDSICSKRGSGSEHEASRRVKSELLIQMDGVAGACAGEDSSKIVMVLAATNFPWDLDEALRRRLEKRIYIPLPTVEGRVELLKINLKEVPLASDV 412          
BLAST of mRNA_F-serratus_M_contig1362.2668.1 vs. uniprot
Match: A0A7S3YD60_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YD60_HETAK)

HSP 1 Score: 137 bits (344), Expect = 1.950e-37
Identity = 71/108 (65.74%), Postives = 79/108 (73.15%), Query Frame = 1
Query:    1 STIFFDEIDSLAGCRGSGGEHEASRRVKTELLVQMDGISAEAGGGDSLNR------VVVLAATNTPWDLDEALRRRLEKRIYIPLPTETGRKELFRINLGGVEVCSTV 306
            STIFFDEIDSLAG RGS  EHEASRRVKTEL+VQMDG++  +              V+VLAATN PWDLDEALRRRLEKRIYIPLP   GR+ELFRIN+   +V   V
Sbjct:  107 STIFFDEIDSLAGSRGSSSEHEASRRVKTELMVQMDGVTETSADXXXXXXXXXXXXVIVLAATNMPWDLDEALRRRLEKRIYIPLPCAEGRRELFRINMKDCDVTEDV 214          
BLAST of mRNA_F-serratus_M_contig1362.2668.1 vs. uniprot
Match: A0A7S2SSB0_9STRA (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSB0_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.860e-37
Identity = 71/109 (65.14%), Postives = 83/109 (76.15%), Query Frame = 1
Query:    1 STIFFDEIDSLAGCRGSGGEHEASRRVKTELLVQMDGISAEAG-----------GGDSLNRVVVLAATNTPWDLDEALRRRLEKRIYIPLPTETGRKELFRINLGGVEV 294
            STIFFDEID++AG RGS GEHEASRRVKTEL+VQMDG+S+ A             G     V+VLAATN PWDLD+ALRRRLEKRIYIPLP+ +GR ELFRIN+  +E+
Sbjct:  361 STIFFDEIDAIAGARGSEGEHEASRRVKTELMVQMDGVSSAADTEDGEQENEEENGPGKRTVIVLAATNRPWDLDDALRRRLEKRIYIPLPSTSGRAELFRINMHDIEL 469          
BLAST of mRNA_F-serratus_M_contig1362.2668.1 vs. uniprot
Match: A0A7S2HGX4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HGX4_9STRA)

HSP 1 Score: 132 bits (332), Expect = 3.780e-37
Identity = 67/101 (66.34%), Postives = 76/101 (75.25%), Query Frame = 1
Query:   25 DSLAGCRGSGGEHEASRRVKTELLVQMDGISAEAGGGDS-------LNRVVVLAATNTPWDLDEALRRRLEKRIYIPLPTETGRKELFRINLGGVEVCSTV 306
            DS+AG RG G EHEASRRVKTEL+VQMDG+ +   G +           V+VLAATN PWDLDEALRRRLEKRIYIPLPT  GR+ELFRIN+G VE+ S V
Sbjct:    1 DSVAGARGGGQEHEASRRVKTELMVQMDGVGSADKGAEKDGEEPXXXXTVIVLAATNRPWDLDEALRRRLEKRIYIPLPTAIGRRELFRINMGEVEIASDV 101          
BLAST of mRNA_F-serratus_M_contig1362.2668.1 vs. uniprot
Match: UPI000A2A8FA7 (katanin p60 ATPase-containing subunit A-like 1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A8FA7)

HSP 1 Score: 140 bits (352), Expect = 3.920e-37
Identity = 68/102 (66.67%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    1 STIFFDEIDSLAGCRGSGGEHEASRRVKTELLVQMDGISAEAGGGDSLNRVVVLAATNTPWDLDEALRRRLEKRIYIPLPTETGRKELFRINLGGVEVCSTV 306
            STIF DEIDS+   RG+  EHEASRRVK+ELL+QMDG+   A G +S   V+VLAATN PWD+DEALRRRLEKRIYIPLPT+ GR EL +INL GV +   V
Sbjct:  317 STIFIDEIDSICSRRGTDSEHEASRRVKSELLIQMDGVGGAADGSESSKNVMVLAATNFPWDIDEALRRRLEKRIYIPLPTKEGRLELLKINLRGVNMSDDV 418          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1362.2668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1XMB5_9STRA9.580e-4267.57Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0Y1I1_AURAN2.210e-3866.06AAA domain-containing protein (Fragment) n=1 Tax=A... [more]
UPI000D7314414.710e-3870.87LOW QUALITY PROTEIN: katanin p60 ATPase-containing... [more]
A0A8J1XK99_OWEFU7.940e-3865.05Katanin p60 ATPase-containing subunit A1 n=1 Tax=O... [more]
A0A835I599_9MAGN9.920e-3866.35AAA domain-containing protein n=5 Tax=Mesangiosper... [more]
UPI001E1DE20D1.870e-3769.61katanin p60 ATPase-containing subunit A1-like isof... [more]
A0A7S3YD60_HETAK1.950e-3765.74Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2SSB0_9STRA2.860e-3765.14Katanin p60 ATPase-containing subunit A1 n=1 Tax=R... [more]
A0A7S2HGX4_9STRA3.780e-3766.34Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
UPI000A2A8FA73.920e-3766.67katanin p60 ATPase-containing subunit A-like 1 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1362contigF-serratus_M_contig1362:15878..16630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue7.3e-31
Seed eggNOG ortholog44056.XP_009034504.1
Preferred nameKATNA1
KEGG koko:K07767
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule-severing ATPase activity
EggNOG OGsCOG0554@1,KOG0738@2759
EC3.6.4.3
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Exons2
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929343.7655663-CDS-F-serratus_M_contig1362:15877..160831622929343.7655663-CDS-F-serratus_M_contig1362:15877..16083Fucus serratus maleCDSF-serratus_M_contig1362 15878..16083 +
1690962807.7190664-CDS-F-serratus_M_contig1362:15877..160831690962807.7190664-CDS-F-serratus_M_contig1362:15877..16083Fucus serratus maleCDSF-serratus_M_contig1362 15878..16083 +
1622929343.7807848-CDS-F-serratus_M_contig1362:16518..166301622929343.7807848-CDS-F-serratus_M_contig1362:16518..16630Fucus serratus maleCDSF-serratus_M_contig1362 16519..16630 +
1690962807.73308-CDS-F-serratus_M_contig1362:16518..166301690962807.73308-CDS-F-serratus_M_contig1362:16518..16630Fucus serratus maleCDSF-serratus_M_contig1362 16519..16630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1362.2668.1prot_F-serratus_M_contig1362.2668.1Fucus serratus malepolypeptideF-serratus_M_contig1362 15878..16630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1362.2668.1

>prot_F-serratus_M_contig1362.2668.1 ID=prot_F-serratus_M_contig1362.2668.1|Name=mRNA_F-serratus_M_contig1362.2668.1|organism=Fucus serratus male|type=polypeptide|length=106bp
STIFFDEIDSLAGCRGSGGEHEASRRVKTELLVQMDGISAEAGGGDSLNR
VVVLAATNTPWDLDEALRRRLEKRIYIPLPTETGRKELFRINLGGVEVCS
TVHST*
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mRNA from alignment at F-serratus_M_contig1362:15878..16630+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1362.2668.1 ID=mRNA_F-serratus_M_contig1362.2668.1|Name=mRNA_F-serratus_M_contig1362.2668.1|organism=Fucus serratus male|type=mRNA|length=753bp|location=Sequence derived from alignment at F-serratus_M_contig1362:15878..16630+ (Fucus serratus male)
AGCACCATCTTTTTTGACGAGATTGACTCCTTGGCGGGGTGCCGCGGGAG CGGCGGTGAGCACGAGGCGAGCCGTCGCGTCAAGACGGAACTACTCGTTC AAATGGACGGCATCAGCGCCGAGGCCGGGGGTGGGGACAGCCTGAATAGA GTGGTTGTCCTCGCCGCCACAAATACGCCCTGGGATTTGGATGAGGCTCT CCGAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAAA GAGAGAGTTTGTGCGTATTTCGAACGTTTTGCCTCCCGACTGTGCTCTAT TCCGATTGACACGCACGCAGCCAGTCTTGTTGTGTGTTTTTTCTTCTCCA CTTTATTTACCCTTGATGTGTTATCCTTGGGCCAGGCCAACAGAGCATTC AAAAAGAGCAGGGCGTTTCTTCCAGCGTCGTTGTCGTTGTCTTTGTCTTT GCCGTCGTTGTTATGCCCCTCGCGACCCTTTTGTGGGCCGACCGTGGCGA TCGTGGCGACCGTGGCGACCTCGCGCTACCCCTCTAGTCTCTTTTTGTCG AAGTTCTTGACCACCCGTCGTCGTCTCCTCGTTCTCGTGATCTCGGACGC ATGGGTCCCGGTGGACGGGTGGGCCGTTCGTTGTGCGCCAGGCGGCTGGA GAAGCGGATATATATCCCGCTACCAACCGAGACCGGAAGGAAGGAGCTCT TCCGTATCAACCTGGGAGGCGTTGAGGTATGCAGTACAGTACACAGTACA TGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1362:15878..16630+

>mRNA_F-serratus_M_contig1362.2668.1 ID=mRNA_F-serratus_M_contig1362.2668.1|Name=mRNA_F-serratus_M_contig1362.2668.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig1362:15878..16630+ (Fucus serratus male)
AGCACCATCTTTTTTGACGAGATTGACTCCTTGGCGGGGTGCCGCGGGAG
CGGCGGTGAGCACGAGGCGAGCCGTCGCGTCAAGACGGAACTACTCGTTC
AAATGGACGGCATCAGCGCCGAGGCCGGGGGTGGGGACAGCCTGAATAGA
GTGGTTGTCCTCGCCGCCACAAATACGCCCTGGGATTTGGATGAGGCTCT
CCGAAGAGCACCATCTTTTTTGACGAGATTGACTCCTTGGCGGGGTGCCG
CGGGAGCGGCGGTGAGCACGAGGCGAGCCGTCGCGTCAAGACGGAACTAC
TCGTTCAAATGGACGGCATCAGCGCCGAGGCCGGGGGTGGGGACAGCCTG
AATAGAGTGGTTGTCCTCGCCGCCACAAATACGCCCTGGGATTTGGATGA
GGCTCTCCGAAGGCGGCTGGAGAAGCGGATATATATCCCGCTACCAACCG
AGACCGGAAGGAAGGAGCTCTTCCGTATCAACCTGGGAGGCGTTGAGGTA
TGCAGTACAGTACACAGTACATGAGCGGCTGGAGAAGCGGATATATATCC
CGCTACCAACCGAGACCGGAAGGAAGGAGCTCTTCCGTATCAACCTGGGA
GGCGTTGAGGTATGCAGTACAGTACACAGTACATGA
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