mRNA_F-serratus_M_contig102.263.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig102.263.1 vs. uniprot
Match: D8LU32_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU32_ECTSI) HSP 1 Score: 301 bits (772), Expect = 3.250e-87 Identity = 220/516 (42.64%), Postives = 289/516 (56.01%), Query Frame = 1 Query: 1 VGAVKCCPPFSTNRLIFFQHKALLTNGSRISSWKSAREQGLEKLKLIQPSKEDGKRQFTPQKRPPLIRSVEDNEGVEASARGDGLITTR--PRSYQTEVFQSVVKSSRNSLVYLPSGLGETLVAAMVLKTLMDLNAERQAYFVVENGAEAMQQAQKLQKDLRCTV---EVMVGSSLGFEALGGEDSGKGGDGSSSGDACDLRCQQKLLDLREARLVVATAGALEHAMCKRYIDPDSICCVVFLLQETYRRNKVCSRDSPLDRLANAFF----LPRVRAVNAPACETASVSKLPKLVALMASPPQVARSSLTPTEAVTVAETVTMVEELLDKFKADLAAPVKTLQEVKDRTAGVELEVVKVKVMATPEESLLLRCLAKLVLRRIIKAAP-GSDSAVEAKKLLHRYNDRGGGNEMAQL-----------QDGVWTFPGQSYVGLCQQALKVSSRRRAETEIKAAEGGGGAEMGGGELSSGDDRKTEDEYHLIDLMNLAYAVDEIGGERTLRKLLNMLE 1485 VG VKC PP S N+LIFFQ KALL + SWK+ RE L K+KL+ KE+ +RQFTP++ P L +S+ + G G+ TR PR YQ E+F +V++ RNSLVYLP+GLG+TLVAAMVLK ++D N ERQAYF+VE A AMQQ +LQ +L TV E++VGSSL +A GG+ GK G L C +R+A +VVATAGA EH MCKRYIDPD+ICCVV L E + C ++ P +R+A +F P V+A A E PKLVAL ASP ++V +T + +LLD+ +ADLAAPV+ LQEVK T V+LE++ V AT E+ LL CL KLVL R++ AP S++ +A+ LL R G A +D W FP + + LCQ+AL + E ++ G M G E L LMNL++AVDEIGGE ++ L L+ Sbjct: 138 VGGVKCYPPLSDNQLIFFQQKALLVDHQHPKSWKNVRESSLRKVKLLPAGKEEEERQFTPRQWPTLRKSLAGGSN-DPGHGGGGMDLTRSTPRGYQEELFDAVMECERNSLVYLPTGLGKTLVAAMVLKQMLDWNPERQAYFLVETTALAMQQTTRLQNELGGTVKKIEMLVGSSL--QAFGGK-RGKIDHG-----LVKLEC------VRDANIVVATAGAFEHCMCKRYIDPDAICCVV--LDEAHH----CGKEHPFNRVARSFLTMKAFPSVQATPDRAKE------FPKLVALTASP----------AGELSVHDTTVRINQLLDRLEADLAAPVQHLQEVKSLTPSVDLELLNV--TATASETTLLGCLEKLVLSRLVGLAPEASEAHAQAQSLLDSLGGRMRGAAAAATASTAAGADVPRKDDAWVFPNKFFTALCQRALSAGGAEQREGWWESD----GTVMDEGSXXXXXXXXXE-ASQLHSLMNLSFAVDEIGGEAIWQRALEELD 609
BLAST of mRNA_F-serratus_M_contig102.263.1 vs. uniprot
Match: A0A0H5R4I3_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R4I3_9EUKA) HSP 1 Score: 75.1 bits (183), Expect = 1.950e-10 Identity = 71/251 (28.29%), Postives = 117/251 (46.61%), Query Frame = 1 Query: 76 NGSRISSWKSAREQG-LEKLKLIQPSKEDGKRQFTPQKRPPLIRSV--EDNEGVEASARGDGLITTRPRSYQTEVFQSVVKSSRNSLVYLPSGLGETLVAAMVLKTLMDLNAERQAYFVVENGAEAMQQAQKLQKDLR-CTVEVMVGSSLGFEALGGEDSGKGGDGSSSGDACDLRCQQKLLDLREARLVVATAGALEHAMCKRYIDPDSICCVVFLLQETYRRNKVCSRDSPLDRLANAFFLPRVRAVNA 816 N ISSWK+ EQ ++ QP + F LI+ ED V+ S L + P YQ +++Q + NSL++LP+G G+TL++AM ++ ++ LN A F+VE A A+QQ L +L ++ ++VGS L + + +LR A ++VATAG+ +A+ + +D IC +V + E + K +S L +L A P++ A+ A Sbjct: 100 NSVPISSWKTVVEQREWASCQVCQPDQPPSDTSF-------LIKQTFNEDLTLVDTSTPVPQLTKSSPYDYQVDMYQRAMAMPDNSLIFLPTGFGKTLISAMFIRRMLQLNPLFSALFIVETNALAIQQYTVLINELGDLSIRILVGSMLPSKPN----------------------INHIAELRSADIIVATAGSYLNAVEQNLLDFGRICALV--MDEAHHCAKNHLFNSLLHKLYGAH-RPKIMALTA 318
BLAST of mRNA_F-serratus_M_contig102.263.1 vs. uniprot
Match: UPI001425AD08 (endoribonuclease Dicer homolog 3a-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425AD08) HSP 1 Score: 62.4 bits (150), Expect = 1.920e-6 Identity = 30/77 (38.96%), Postives = 54/77 (70.13%), Query Frame = 1 Query: 247 DGLITTRPRSYQTEVFQSVVKSSRNSLVYLPSGLGETLVAAMVLKTLMDLNAERQAYFVVENGAEAMQQAQKLQKDL 477 D L +T+ R+YQ E++ ++S RN++++L +G G+TLVAAM+ +T++ +N RQ F+V+ +QQ+ L+K+L Sbjct: 263 DSLTSTKSRNYQRELYMQAMES-RNAVIFLQTGTGKTLVAAMIARTMLVMNPGRQVVFLVDKILLCIQQSDYLEKEL 338
BLAST of mRNA_F-serratus_M_contig102.263.1 vs. uniprot
Match: A0A2B4R4E1_STYPI (RNA-directed RNA polymerase n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4R4E1_STYPI) HSP 1 Score: 61.6 bits (148), Expect = 4.220e-6 Identity = 36/87 (41.38%), Postives = 52/87 (59.77%), Query Frame = 1 Query: 247 DGLITTRPRSYQTEVFQSVVKSSRNSLVYLPSGLGETLVAAMVLKTLMDLNAERQAYFVVENGAEAMQQAQKLQKDLR-CTVEVMVG 504 D L PR Q EVF S ++ N+LVY+P+GLG+TL+AAMV+ + LN + F+V+ A QQ ++ L TVE++VG Sbjct: 483 DPLTRKEPRDSQREVFLSAMRG--NTLVYVPTGLGKTLIAAMVMSCMKKLNPSKVMVFLVDRAPLAYQQRDYIKSHLTDLTVEILVG 567
BLAST of mRNA_F-serratus_M_contig102.263.1 vs. uniprot
Match: UPI000C0483E4 (uncharacterized protein LOC111346816 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C0483E4) HSP 1 Score: 60.1 bits (144), Expect = 1.190e-5 Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 1 Query: 247 DGLITTRPRSYQTEVFQSVVKSSRNSLVYLPSGLGETLVAAMVLKTLMDLNAERQAYFVVENGAEAMQQAQKLQKDLR-CTVEVMVG 504 D L PR YQ E+F S ++ N+LVYLP+G G+TL+AAMV+ + LN + +V+ A QQ ++ L+ TVE +VG Sbjct: 141 DSLTREEPRDYQRELFLSAMRG--NTLVYLPTGSGKTLIAAMVMSCMKKLNPSKVMVLLVDRVPLAHQQRDYIKSQLKDLTVETLVG 225
BLAST of mRNA_F-serratus_M_contig102.263.1 vs. uniprot
Match: UPI000359D49A (uncharacterized protein LOC101845957 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359D49A) HSP 1 Score: 60.1 bits (144), Expect = 1.200e-5 Identity = 30/74 (40.54%), Postives = 49/74 (66.22%), Query Frame = 1 Query: 256 ITTRPRSYQTEVFQSVVKSSRNSLVYLPSGLGETLVAAMVLKTLMDLNAERQAYFVVENGAEAMQQAQKLQKDL 477 + T PR YQ E+ + +KS +SLVYLP+G G+TLVA +V+ +++ N +R F+V+ MQQA+ +++ L Sbjct: 1081 VDTTPRPYQIELVEKALKS--DSLVYLPTGTGKTLVAVVVIAAMLEANTDRPVLFLVDKVLLVMQQAKYIKRQL 1152
BLAST of mRNA_F-serratus_M_contig102.263.1 vs. uniprot
Match: A0A2B4R985_STYPI (RNA-directed RNA polymerase n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4R985_STYPI) HSP 1 Score: 60.1 bits (144), Expect = 1.270e-5 Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 1 Query: 247 DGLITTRPRSYQTEVFQSVVKSSRNSLVYLPSGLGETLVAAMVLKTLMDLNAERQAYFVVENGAEAMQQAQKLQKDLR-CTVEVMVG 504 D L PR YQ E+F S ++ N+LVYLP+G G+TL+AAMV+ + LN + +V+ A QQ ++ L+ TVE +VG Sbjct: 141 DSLTREEPRDYQRELFLSAMRG--NTLVYLPTGSGKTLIAAMVMSCMKKLNPSKVMVLLVDRVPLAHQQRDYIKSQLKDLTVETLVG 225
BLAST of mRNA_F-serratus_M_contig102.263.1 vs. uniprot
Match: UPI00077A0B41 (putative ATP-dependent DNA helicase fml2 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A0B41) HSP 1 Score: 59.3 bits (142), Expect = 1.880e-5 Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 1 Query: 175 TPQKRPPLIRSVEDNEGVEASARGDGLITTRPRSYQTEVFQSVVKSSRNSLVYLPSGLGETLVAAMVLKTLMDLNAERQAYFVVENGAEAMQQAQKLQKDL 477 +PQ P++ + E S D L PR YQ E+F S + RN+LVYLP+G G+TL+AAMVL + +LN + F+V+ QQ+ ++K L Sbjct: 148 SPQASLPMVY-CDTGELTHTSREIDVLTRENPRDYQRELFLSTM--CRNTLVYLPTGSGKTLIAAMVLSCMRELNPGKLMVFLVDRIPLVFQQSNYIKKQL 245
BLAST of mRNA_F-serratus_M_contig102.263.1 vs. uniprot
Match: UPI001CF5EE72 (LOW QUALITY PROTEIN: uncharacterized protein LOC114966049 n=4 Tax=Acropora TaxID=6127 RepID=UPI001CF5EE72) HSP 1 Score: 58.9 bits (141), Expect = 2.900e-5 Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 1 Query: 247 DGLITTRPRSYQTEVFQSVVKSSRNSLVYLPSGLGETLVAAMVLKTLMDLNAERQAYFVVENGAEAMQQAQKLQKDL 477 D L PR YQ E+F S + RN+LVYLP+G G+TL+AAMVL + +LN + F+V+ QQ+ ++K L Sbjct: 187 DVLTRENPRDYQRELFLSTM--CRNTLVYLPTGSGKTLIAAMVLSCMRELNPGKLMVFLVDRIPLVFQQSNYIKKQL 261
BLAST of mRNA_F-serratus_M_contig102.263.1 vs. uniprot
Match: A0A2B4RG40_STYPI (RNA-directed RNA polymerase n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RG40_STYPI) HSP 1 Score: 58.9 bits (141), Expect = 2.950e-5 Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 1 Query: 247 DGLITTRPRSYQTEVFQSVVKSSRNSLVYLPSGLGETLVAAMVLKTLMDLNAERQAYFVVENGAEAMQQAQKLQKDLR-CTVEVMVG 504 D L PR YQ E+F S ++ N+LVYLP+G G+TL+A MV+ + LN + F+V+ A QQ ++ L TVE++VG Sbjct: 791 DSLTRQVPRDYQRELFLSAMRG--NTLVYLPTGSGKTLIAVMVMSCMKKLNPRKVMVFLVDRVPLAHQQRDYIKSQLTDLTVEMLVG 875 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig102.263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig102.263.1 >prot_F-serratus_M_contig102.263.1 ID=prot_F-serratus_M_contig102.263.1|Name=mRNA_F-serratus_M_contig102.263.1|organism=Fucus serratus male|type=polypeptide|length=578bp VGAVKCCPPFSTNRLIFFQHKALLTNGSRISSWKSAREQGLEKLKLIQPSback to top mRNA from alignment at F-serratus_M_contig102:141097..146035- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig102.263.1 ID=mRNA_F-serratus_M_contig102.263.1|Name=mRNA_F-serratus_M_contig102.263.1|organism=Fucus serratus male|type=mRNA|length=4939bp|location=Sequence derived from alignment at F-serratus_M_contig102:141097..146035- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig102:141097..146035- >mRNA_F-serratus_M_contig102.263.1 ID=mRNA_F-serratus_M_contig102.263.1|Name=mRNA_F-serratus_M_contig102.263.1|organism=Fucus serratus male|type=CDS|length=3468bp|location=Sequence derived from alignment at F-serratus_M_contig102:141097..146035- (Fucus serratus male)back to top |