mRNA_F-serratus_M_contig1360.2660.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1360.2660.1
Unique NamemRNA_F-serratus_M_contig1360.2660.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1360.2660.1 vs. uniprot
Match: A0A6H5L9A9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9A9_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.710e-19
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 WLESLLWASECYNRAATSANNEWLSPHEIFYGNRPQLPLLPFLQPAYHRVPRQRKTDPRARLCYFINFGYNHGRDCYRLLDAETGRVAYSRD 276
            WL S LWAS C+NR+AT AN  W+SP E F+G +P L ++PF Q    RV R  K D ++  C++++   NH      +L A+TGR+A + +
Sbjct:   33 WLSSALWASGCFNRSATKANQGWMSPFEAFFGRKPPLTVVPFFQEGRMRVKRATKADVQSARCFYLHGANNHSTSTAVVLRADTGRLALTNN 124
[Close]
BLAST of mRNA_F-serratus_M_contig1360.2660.1 vs. uniprot
Match: A0A6H5JD95_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD95_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 4.580e-19
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 WLESLLWASECYNRAATSANNEWLSPHEIFYGNRPQLPLLPFLQPAYHRVPRQRKTDPRARLCYFINFGYNHGRDCYRLLDAETGRVAYSRD 276
            WL S LWAS C+NR+AT AN  W+SP E F+G +P L ++PF Q    RV R  K D ++  C++++   NH      +L A+TGR+A + +
Sbjct:  250 WLSSALWASGCFNRSATKANQGWMSPFEAFFGRKPPLTVVPFFQEGRMRVKRATKADVQSARCFYLHGANNHSTSTAVVLRADTGRLALTNN 341
[Close]
BLAST of mRNA_F-serratus_M_contig1360.2660.1 vs. uniprot
Match: A0A6H5K3I1_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I1_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 4.760e-19
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 WLESLLWASECYNRAATSANNEWLSPHEIFYGNRPQLPLLPFLQPAYHRVPRQRKTDPRARLCYFINFGYNHGRDCYRLLDAETGRVAYSRD 276
            WL S LWAS C+NR+AT AN  W+SP E F+G +P L ++PF Q    RV R  K D ++  C++++   NH      +L A+TGR+A + +
Sbjct: 1221 WLSSALWASGCFNRSATKANQGWMSPFEAFFGRKPPLTVVPFFQEGRMRVKRATKADVQSARCFYLHGANNHSTSTAVVLRADTGRLALTNN 1312
[Close]
BLAST of mRNA_F-serratus_M_contig1360.2660.1 vs. uniprot
Match: A0A6H5L4Z1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Z1_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 4.070e-18
Identity = 39/92 (42.39%), Postives = 57/92 (61.96%), Query Frame = 1 
Query:    1 WLESLLWASECYNRAATSANNEWLSPHEIFYGNRPQLPLLPFLQPAYHRVPRQRKTDPRARLCYFINFGYNHGRDCYRLLDAETGRVAYSRD 276
            WL S LWAS C+NR+AT AN  W+SP E F+G +P L ++PF Q    RV R  K D ++  C++++   NH      +L A+TGR+A + +
Sbjct:  105 WLSSALWASGCFNRSATKANQGWMSPFEAFFGRKPPLNVVPFFQEGMMRVKRAIKADVQSVRCFYLHGANNHSTVTAVVLRADTGRLAITNN 196
[Close]
BLAST of mRNA_F-serratus_M_contig1360.2660.1 vs. uniprot
Match: A0A6H5JL87_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL87_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 5.970e-18
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:    1 WLESLLWASECYNRAATSANNEWLSPHEIFYGNRPQLPLLPFLQPAYHRVPRQRKTDPRARLCYFINFGYNHGRDCYRLLDAETGRVAYSRD 276
            WL S LWAS C+NR+AT AN +W+SP E F+G +P L  +PF Q    RV R  K D ++  C++++   NH      +L A+TG +A + +
Sbjct:  169 WLASALWASACFNRSATKANVDWVSPFEAFFGRKPPLTAVPFFQEGRMRVKRATKADVQSVRCFYLHGDNNHSTSPAVVLRADTGSLALTNN 260
[Close]
BLAST of mRNA_F-serratus_M_contig1360.2660.1 vs. uniprot
Match: A0A6H5JCK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK7_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 5.410e-15
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1 
Query:    1 WLESLLWASECYNRAATSANNEWLSPHEIFYGNRPQLPLLPFLQPAYHRVPRQRKTDPRARLCYFINFGYNHGRDCYRLLDA 246
            WL S LWAS C+NR+AT AN  W+SP E F+G +P L ++PF Q    RV R  K D ++  C++++   NH      +L A
Sbjct:  842 WLSSALWASGCFNRSATKANQGWMSPFEAFFGRKPPLNVVPFFQEGMMRVKRAIKADVQSMRCFYLHGDNNHSTATAVVLGA 923
[Close]
BLAST of mRNA_F-serratus_M_contig1360.2660.1 vs. uniprot
Match: A0A6H5KHH9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHH9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 9.770e-15
Identity = 36/88 (40.91%), Postives = 50/88 (56.82%), Query Frame = 1 
Query:    1 WLESLLWASECYNRAATSANNEWLSPHEIFYGNRPQLPLLPFLQPAYHRVPRQRKTDPRARLCYFINFGYNHGRDCYRLLDAETGRVA 264
            WL S LWAS C+NR+ T AN  W SP E F+G +P L ++P       RV R  K D ++  C++++   NH      +L A TGR+A
Sbjct:  323 WLSSALWASGCFNRSVTKANQGWASPFEAFFGRKPPLNVVPVFLEGMMRVKRASKADVQSVRCFYLHGANNHLTATAVVLRASTGRLA 410
[Close]
BLAST of mRNA_F-serratus_M_contig1360.2660.1 vs. uniprot
Match: A0A6H5JHJ0_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHJ0_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.030e-11
Identity = 36/102 (35.29%), Postives = 51/102 (50.00%), Query Frame = 1 
Query:    1 WLESLLWASECYNRAATSANNEWLSPHEIFYGNRPQLPLLPFLQPAYH---------------RVPRQRKTDPRARLCYFINFGYNHGRDCYRLLDAETGRV 261
            WL S LWAS C+NR+AT AN  W+SP E F+G +P     P   P  +               RV R  K D ++  C++++   NH      +L A+TGR+
Sbjct:   88 WLSSALWASGCFNRSATKANQGWMSPFEAFFGRKP-----PLXAPTDNACGSRRRSGHPEGMMRVKRAIKADVQSVRCFYLHGANNHSTVTAVVLRADTGRL 184
[Close]
BLAST of mRNA_F-serratus_M_contig1360.2660.1 vs. uniprot
Match: A0A6H5KBJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ8_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.870e-6
Identity = 21/35 (60.00%), Postives = 25/35 (71.43%), Query Frame = 1 
Query:    1 WLESLLWASECYNRAATSANNEWLSPHEIFYGNRP 105
            WL S LWAS C+NR+AT AN  W+SP E F+G  P
Sbjct:  226 WLSSALWASGCFNRSATKANQGWMSPFEAFFGRHP 260
[Close]
BLAST of mRNA_F-serratus_M_contig1360.2660.1 vs. uniprot
Match: A0A6A4JR07_APOLU (Uncharacterized protein n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4JR07_APOLU)

HSP 1 Score: 51.2 bits (121), Expect = 2.230e-5
Identity = 32/95 (33.68%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:    1 WLESLLWASECYNRAATSANNEWLSPHEIFYGNRPQLPLLP-FLQPAYHRVP--RQRKTDPRARLCYFINFGYNHGRDCYRLLDAETGRVAYSRD 276
            W E++  A    NR+ T +  +  +PHE+++GN+P L  L  F  PA  ++P  +++K DP++    F  +G N     YRL++ E G++  SRD
Sbjct:  598 WAEAVSTAVYLNNRSPTKSVED-KTPHEVWFGNKPDLSHLRIFGCPAMVKIPSEKRKKWDPKSMKMIFTGYGENVKG--YRLINPEDGQLTLSRD 689
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1360.2660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5L9A9_9PHAE2.710e-1942.39Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JD95_9PHAE4.580e-1942.39Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3I1_9PHAE4.760e-1942.39Integrase catalytic domain-containing protein n=5 ... [more]
A0A6H5L4Z1_9PHAE4.070e-1842.39Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JL87_9PHAE5.970e-1841.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JCK7_9PHAE5.410e-1542.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHH9_9PHAE9.770e-1540.91Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JHJ0_9PHAE1.030e-1135.29Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KBJ8_9PHAE1.870e-660.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A4JR07_APOLU2.230e-533.68Uncharacterized protein n=1 Tax=Apolygus lucorum T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1360contigF-serratus_M_contig1360:205087..205362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929342.1772037-CDS-F-serratus_M_contig1360:205086..2053621622929342.1772037-CDS-F-serratus_M_contig1360:205086..205362Fucus serratus maleCDSF-serratus_M_contig1360 205087..205362 -
1690962806.850598-CDS-F-serratus_M_contig1360:205086..2053621690962806.850598-CDS-F-serratus_M_contig1360:205086..205362Fucus serratus maleCDSF-serratus_M_contig1360 205087..205362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1360.2660.1prot_F-serratus_M_contig1360.2660.1Fucus serratus malepolypeptideF-serratus_M_contig1360 205087..205362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1360.2660.1

>prot_F-serratus_M_contig1360.2660.1 ID=prot_F-serratus_M_contig1360.2660.1|Name=mRNA_F-serratus_M_contig1360.2660.1|organism=Fucus serratus male|type=polypeptide|length=92bp
WLESLLWASECYNRAATSANNEWLSPHEIFYGNRPQLPLLPFLQPAYHRV
PRQRKTDPRARLCYFINFGYNHGRDCYRLLDAETGRVAYSRD
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mRNA from alignment at F-serratus_M_contig1360:205087..205362-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1360.2660.1 ID=mRNA_F-serratus_M_contig1360.2660.1|Name=mRNA_F-serratus_M_contig1360.2660.1|organism=Fucus serratus male|type=mRNA|length=276bp|location=Sequence derived from alignment at F-serratus_M_contig1360:205087..205362- (Fucus serratus male)
TGGCTGGAGTCGCTACTCTGGGCATCGGAGTGCTACAACAGGGCGGCAAC
ATCAGCGAACAACGAGTGGCTTTCCCCACACGAGATTTTCTACGGGAACC
GCCCGCAGTTGCCACTGCTGCCCTTCCTCCAGCCCGCCTACCATCGTGTG
CCGCGACAGCGGAAGACAGATCCCCGGGCCCGTCTGTGCTATTTTATTAA
TTTTGGGTATAATCACGGGCGGGATTGCTACCGGCTCCTGGATGCGGAAA
CGGGGAGGGTCGCCTATTCGCGCGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1360:205087..205362-

>mRNA_F-serratus_M_contig1360.2660.1 ID=mRNA_F-serratus_M_contig1360.2660.1|Name=mRNA_F-serratus_M_contig1360.2660.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig1360:205087..205362- (Fucus serratus male)
TGGCTGGAGTCGCTACTCTGGGCATCGGAGTGCTACAACAGGGCGGCAAC
ATCAGCGAACAACGAGTGGCTTTCCCCACACGAGATTTTCTACGGGAACC
GCCCGCAGTTGCCACTGCTGCCCTTCCTCCAGCCCGCCTACCATCGTGTG
CCGCGACAGCGGAAGACAGATCCCCGGGCCCGTCTGTGCTATTTTATTAA
TTTTGGGTATAATCACGGGCGGGATTGCTACCGGCTCCTGGATGCGGAAA
CGGGGAGGGTCGCCTATTCGCGCGACTGGCTGGAGTCGCTACTCTGGGCA
TCGGAGTGCTACAACAGGGCGGCAACATCAGCGAACAACGAGTGGCTTTC
CCCACACGAGATTTTCTACGGGAACCGCCCGCAGTTGCCACTGCTGCCCT
TCCTCCAGCCCGCCTACCATCGTGTGCCGCGACAGCGGAAGACAGATCCC
CGGGCCCGTCTGTGCTATTTTATTAATTTTGGGTATAATCACGGGCGGGA
TTGCTACCGGCTCCTGGATGCGGAAACGGGGAGGGTCGCCTATTCGCGCG
AC
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