mRNA_F-serratus_M_contig1360.2659.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: D7FH19_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH19_ECTSI) HSP 1 Score: 193 bits (490), Expect = 4.530e-52 Identity = 130/288 (45.14%), Postives = 174/288 (60.42%), Query Frame = 1
Query: 1 VVNVFANTGIHVLVTTRERTVIPPMNRGVMVDVGDMEEEERLELLRKASHAHGPLPTE-AKQVADDCCMLPLALGIAGAMVKDQPLDASSWRTVHENLKQKTKL-KDMRSEEMSRQSKSIFSTLDASIDILPRTVQEQLLLMAVLSSGVAASSEMLASLWDVDVSDVKTGATALVDRGLLQDVNAQYRLHDLVLEYLQMAIKMDED-LVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKLDRSLMVEEFYRASLKGVTEIEDVQNAGHLLFLV 855
VVN FA+TG HVLVTTR+R VI ++ GV +VGDM EE+ LE+L KAS A GPLP E A+QVA DC MLPLALG+ GA+ KDQPLD SWR VH+ L++K + +D+ ++ +FST+D S+ LP +EQL LMAV++ S L + D+ G YRLHDLVL+YLQ+ + M L +A SRQAR+L+R+ V R Y+A + S+ GLYSLVAL + + LD S+ + Y SL+GV +I + LL L+
Sbjct: 373 VVNAFASTGFHVLVTTRQRAVISAVHAGVWTEVGDMSEEDALEVLSKASQADGPLPAEEARQVALDCGMLPLALGMIGALAKDQPLDPLSWRAVHKKLQEKRAMFRDV-------ENGKLFSTMDTSVCNLPSNQREQLQLMAVMAFW---SRRNLGNARKPVGPDMPDG----------------YRLHDLVLDYLQLIVTMGGGRLAGEASSRQARYLARLGVFRQYNA-RGHNVSTGGLYSLVALWNSAKNLDGSVNADACYSKSLEGVKDIGITREVAWLLLLL 633
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI) HSP 1 Score: 144 bits (363), Expect = 3.980e-35 Identity = 107/291 (36.77%), Postives = 163/291 (56.01%), Query Frame = 1
Query: 1 VVNVFANTGIHVLVTTRERTVIPPMNRGVMVDVGDMEEEERLELLRKASHAHGP----LPTEAKQVADDCCMLPLALGIAGAM--VKDQPLDASSWRTVHENLKQKTKLKDMRSEEMSRQSKSIFSTLDASIDILPRTVQEQLLLMAVLSSGVAASSEMLASLWDV-DVSDVKTGATALVDRGLLQDVNAQ-YRLHDLVLEYLQMAIKMDEDLVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKLDRSLMVEEF-YRASLKGVTEIEDVQNAGHLL 846
VV F G+ VLVTTR+R+++ G ++++GDM E+E LELL K S G + T+ +V D C LPL L IAG+M VK + L +W + E + T + E +S+++ L AS + L +E+ L MAVL+ G A EML +LW++ DV K A LV++ LLQDV+ YR+HDL+L+YL++ IK D + VKKA + QA++L R++V+ +Y +K + + GL+ L L ++KL ++E YRA L + E + L
Sbjct: 377 VVAAFLGVGLKVLVTTRDRSIVGVP--GGLLELGDMAEDEALELLWKTSGTVGQPGDGVRTQMTKVVDRCGRLPLVLAIAGSMPVVKGKGLKDGAWEELIEEFENVTTIMW----EPGEESRNLDMVLGASFNALAARKREEFLRMAVLAPGAVAPFEMLRNLWEIQDVEGTKEEAEGLVNKCLLQDVDGVGYRVHDLLLKYLRVKIKQDGERVKKATALQAQYLGRLDVVMSY-GDQKHGADNQGLFGLGTLWRCLEKLSGDPVLETASYRAILGELDSCEATAEVANCL 660
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE) HSP 1 Score: 142 bits (358), Expect = 4.450e-35 Identity = 110/287 (38.33%), Postives = 163/287 (56.79%), Query Frame = 1
Query: 1 VVNVFANTGIHVLVTTRERTVIPPMNRGVMVDVGDMEEEERLELLRKASHAHGP----LPTEAKQVADDCCMLPLALGIAGAM--VKDQPLDASSWRTVHENLKQKTKLKDMRSEEMSRQSKSIFSTLDASIDILPRTVQEQLLLMAVLSSGVAASSEMLASLWDV-DVSDVKTGATALVDRGLLQDVNAQ-YRLHDLVLEYLQMAIKMDEDLVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKL--DRSLMVEEFYRASLKGVTEIEDVQN 831
VV+ + G+ VLVTTR+R+V+ G ++++GDM EEE LELL K S G + T+ +V C LPL L IAG+M VK + L A +W + + + K +R E QS SI L S D L QE+ L M VL++G A EML +LW++ D + A LV + LLQ V YR+HDLVLE+++ +I+ +E++V+KA + QA++L R++VL++Y + + + GL+ L AL V+KL D L V YRASL + E ++
Sbjct: 141 VVDALLSLGLKVLVTTRDRSVVGVS--GGLLELGDMTEEEALELLLKTSRTVGQPGHEVRTQMTKVVVLCGHLPLVLAIAGSMSVVKGKGLTAVAWEELIKEFENVAKKMRVRGE----QSSSIKVVLGTSFDALAARKQEESLKMTVLAAGALAPIEMLRNLWEIEDAEGTREEAEGLVSKCLLQAVGGSGYRVHDLVLEFVKTSIRAEEEMVEKATALQAQYLGRVDVLKSY-GDPEHGAGNQGLFFLDALWRSVEKLSGDPELEVAS-YRASLGELESCEATED 419
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 140 bits (352), Expect = 1.230e-33 Identity = 112/284 (39.44%), Postives = 160/284 (56.34%), Query Frame = 1
Query: 1 VVNVFANTGIHVLVTTRERTVIP-PMNRGVMVDVGDMEEEERLELLRKASHAHGP----LPTEAKQVADDCCMLPLALGIAGAM--VKDQPLDASSWRTVHENLKQKTKLKDMRSEEMSRQSKSIFSTLDASIDILPRTVQEQLLLMAVLSSGVAASSEMLASLWDV-DVSDVKTGATALVDRGLLQDVNAQ-YRLHDLVLEYLQMAIKMDEDLVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKL--DRSLMVEEFYRASLKGVTEIE 819
VV+ F G VL+TTR+R+V+ P R +++GD+ EEE LELLRK S A G + T+ +V C LPL L IAG+M V+ + L A +W + + L+ K R E QS S+ L+ S D L QE+ L MAVL++G A EML +LW++ D + A LV + LL V YR+HDLVLE+ + +I+ +E+ VKKA + QA++L R++VL +Y + + GL+ L AL V+KL D L V YRASL+ + E
Sbjct: 383 VVDAFVPLGFKVLLTTRDRSVVGVPAGR---LELGDVTEEEALELLRKTSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGE----QSSSMKVVLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWEIEDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLESY-GDPEHGTGDQGLFFLDALWRSVEKLSGDPGLEVAS-YRASLEELESCE 657
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 135 bits (340), Expect = 4.670e-32 Identity = 107/275 (38.91%), Postives = 153/275 (55.64%), Query Frame = 1
Query: 1 VVNVFANTGIHVLVTTRERTVIP-PMNRGVMVDVGDMEEEERLELLRKASHAHGP----LPTEAKQVADDCCMLPLALGIAGAM--VKDQPLDASSWRTVHENLKQKTKLKDMRSEEMSRQSKSIFSTLDASIDILPRTVQEQLLLMAVLSSGVAASSEMLASLWDV-DVSDVKTGATALVDRGLLQDVNAQ-YRLHDLVLEYLQMAIKMDEDLVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKL--DRSLMVEEFYRA 792
VV+ F G VL+TTR+R+V+ P R +++GDM EEE LELLRK S G + T+ +V C LPL L IAG+M V+ + L A +W + + L+ K R E QS S+ L+ S D L QE+ L MAVL++G A EML +LW+V D + A LV + LL V YR+HDLVLE+ + +I+ +E+ VKKA + QA++L R++VL Y + + GL+ L AL V+KL D L V ++ +
Sbjct: 400 VVDAFVPLGFKVLLTTRDRSVVGLPAGR---LELGDMTEEEALELLRKTSGTVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGE----QSSSMKVVLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWEVEDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLEGY-GDPEHGAGGQGLFFLDALWRSVEKLSGDPELEVASYHNS 666
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI) HSP 1 Score: 133 bits (335), Expect = 2.190e-31 Identity = 104/294 (35.37%), Postives = 160/294 (54.42%), Query Frame = 1
Query: 1 VVNVFANTGIHVLVTTRERTVI-PPMNRGVMVDVGDMEEEERLELLRKASHAHGP---LPTEAKQVADDCCMLPLALGIAGAM--VKDQPLDASSWRTVHENLKQKTKLKDMRSEEMSRQSKSIFSTLDASIDILPRTVQEQLLLMAVLSSGVAASSEMLASLWDV-DVSDVKTGATALVDRGLLQDVNAQ-YRLHDLVLEYLQMAIKMDEDLVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKLDRSLMVE-EFYRASLKGVTEIEDVQNAGHLLFLV 855
VV+ F G +L+TTR+R+++ P R +++GDM EEE LELLRK S P + + +V C LPL L IAG+M VK + L A +W + + + K R +QS SI L+ + D L Q++ L+MAVL++G A EML++LW++ D A LV + LL V YR+HDLVL++ + +I+ +E+ VK+A + QA++L R++V+ +Y + + G++ L AL V+KL +E YRASL + E + A F V
Sbjct: 185 VVDAFVPLGFKLLLTTRDRSIVCDPAGR---LELGDMTEEEALELLRKTSGTVDPGDDVRMKMTKVVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKEFENVAKKMRAR----GQQSSSIKVVLETTFDSLATRKQKEFLMMAVLAAGALAPIEMLSNLWEIEDAEGTHAEAEGLVSKYLLHAVGGGGYRMHDLVLDFAKTSIRAEEETVKRATALQAQYLGRLDVVESY-GDPEHGAGDQGIFFLDALWRSVEKLSGDPQLEVASYRASLGALEWGEATEAAARSYFSV 470
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: A0A6H5JSG2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG2_9PHAE) HSP 1 Score: 131 bits (330), Expect = 8.880e-31 Identity = 104/288 (36.11%), Postives = 156/288 (54.17%), Query Frame = 1
Query: 1 VVNVFANTGIHVLVTTRERTVIPPMNRGVMVDVGDMEEEERLELLRKASHAHGPLPTEAKQVADDCCMLPLALGIAGAM--VKDQPLDASSWRTVHENL---KQKTKLKDMRSEEMSRQSKS-IFSTLDASIDILPRTVQEQLLLMAVLSSGVAASSEMLASLWDVDVSDVKTGATALVDRGLLQDVNAQYRLHDLVLEYLQMAIKMDEDLVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKLDRSLMVE-EFYRASLKGVTEIE---DVQNA 834
VVN TG+ ++VTTR +V RG++V GDME+ E ELLRK S A EA QVA DC PL L IAG++ V++ P A +WR +H + K+ + M ++ S+S +F L S + L Q+ L + VL+ GV A MLA+LWD D+ K A+A V R LL + + +HDL+L+++ + + + +V++A RQ +LSR+ V+ Y + S G+YSL++L V KL + ++ E Y SL+ + E DV NA
Sbjct: 334 VVNALRPTGLQIVVTTRLASV----GRGMIV--GDMEDGEARELLRKKSGAVALPAPEANQVARDCGCHPLTLAIAGSLRCVREAPDSALAWRELHSEIGRIKRSRRGLQMTTDSDEEPSQSPLFPVLRLSFERLRVQEQDSFLSLVVLARGVPAPVAMLANLWDKDMKGAKKEASAFVGRSLLIEEREAFVVHDLLLDFIDVMCQHESGVVQRAVMRQTHYLSRLPVVWRYCRKGE---SLEGMYSLISLWRPVMKLSGNEKLDVEAYENSLRELGEEHEPIDVANA 612
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI) HSP 1 Score: 131 bits (329), Expect = 1.460e-30 Identity = 104/277 (37.55%), Postives = 155/277 (55.96%), Query Frame = 1
Query: 1 VVNVFANTGIHVLVTTRE-RTVIPPMNRGVMVDVGDMEEEERLELLRKASHAHGP----LPTEAKQVADDCCMLPLALGIAGAM--VKDQPLDASSWRTVHENLKQKTKLKDMRSEEMSRQSKSIFSTLDASIDILPRTVQEQLLLMAVLSSGVAASSEMLASLWDV-DVSDVKTGATALVDRGLLQDV-NAQYRLHDLVLEYLQMAIKMDEDLVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKLDRSLMVE-EFYRASLK 801
VV+ G VL+TTR+ V+ P R +D+GDM EEE LELLRK S G + + +V C LPL L IAG+M VK + L A +W + ++ + K R +QS +I L+ S D L QE+ L M+VL++G A EML +LW++ D + A LV++ LL V + YR+HD+VLE+ + +I+ DE+ V+KA + QA+FL R++VL++Y + + GL+ L +L V+KL +E YRASL+
Sbjct: 358 VVDALVPLGFKVLLTTRDWSVVVVPARR---LDLGDMTEEEALELLRKTSGTVGQPGDYVRMKMTKVVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKSFENVAKKMRAR----GQQSSAIKVVLETSFDSLAVQKQEEFLRMSVLAAGALAPIEMLRNLWEIEDAEGTRDEAEGLVNKCLLHAVGDGGYRVHDMVLEFAKTSIRADEETVEKATALQAQFLGRLDVLKSY-RDPEHGAGDRGLFFLDSLWRSVEKLSGDPELEVTTYRASLR 626
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.900e-28 Identity = 107/290 (36.90%), Postives = 150/290 (51.72%), Query Frame = 1
Query: 1 VVNVFANTGIHVLVTTRERTVIP-PMNRGVMVDVGDMEEEERLELLRKASHAHGP----LPTEAKQVADDCCMLPLALGIAGAM--VKDQPLDASSWRTVHENLKQKTKLKDMRSEEMSRQSKSIFSTLDASIDILPRTVQEQLLLMAVLSSG-----------------------------VAASSEMLASLWDV-DVSDVKTGATALVDRGLLQDVNAQ-YRLHDLVLEYLQMAIKMDEDLVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKL 756
VV+ F G VL+TTR+R+V+ P R ++VGDM EEE LELLRK+S A G + T+ +V C LPL L IAG+M VK + L A +W+ + ENL+ K R E QS SI + L+ S D L QE+ L +AVL++ A EML +LW++ D + A LV + LL V YR+HDLVLEY + I+ D ++V+K + QA FL R++VL++Y + + S L+ L AL V+KL
Sbjct: 346 VVDAFVPLGFKVLLTTRDRSVVVVPAGR---LEVGDMTEEEALELLRKSSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVKGKGLTAVAWKELAENLENVAKKMRARGE----QSSSINAVLETSFDSLAVRKQEEFLKLAVLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAPIEMLRNLWEIEDAEGTRDEAEGLVSKCLLHAVGGGGYRVHDLVLEYAKTRIRADAEMVRKVTALQAHFLGRLDVLKSYRDPEHGAGNQS-LFFLDALWRSVEKL 627
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE) HSP 1 Score: 124 bits (311), Expect = 3.180e-28 Identity = 102/283 (36.04%), Postives = 150/283 (53.00%), Query Frame = 1
Query: 1 VVNVFANTGIHVLVTTRERTVIPPMNRGVMVDVGDMEEEERLELLRKASHAHG----PLPTEAKQVADDCCMLPLALGIAGAM--VKDQPLDASSWRTVHENLKQK-TKLKDMRSEEMSRQSKSIFSTLDASIDILPRTVQEQLLLMAVLSSGVAASSEMLASLWDV-DVSDVKTGATALVDRGLLQDVNAQ-YRLHDLVLEYLQMAIKMDEDLVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKLDRSLMVE-EFYRASLKGVTEIE 819
VV+ G VLVTTR+R+V+ R +++GDM EEE LELL K S G + T +V C LPL L IAG++ VK + L A +W + + L+ TK+ E S S+ L+ S D L ++ AVL+ G AS+EML +LW+ D + A LV + LLQDV YR+HDLVL+++++ IK D ++ KK + QA+FL R+ VL++Y + + + GL+ L AL V++L +E Y SL + E
Sbjct: 277 VVDALLPLGFKVLVTTRDRSVVGVPTR--CLELGDMTEEEALELLLKTSGTVGRPGDSVRTVMTKVVTLCGRLPLVLAIAGSLPVVKGKGLTAGAWGKLIDELENVVTKM-----EASLEDSNSLNVVLETSFDALTFRKKQAFKKTAVLAPGAVASTEMLLNLWETEDTGGTREDAEGLVSKCLLQDVGGGGYRVHDLVLDFVKIKIKADMEMAKKIAALQAQFLGRLNVLKSYEHPEHG-AGNQGLFVLDALWRSVEQLSGDPKLEVPSYSTSLAALESCE 551 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1360.2659.1 >prot_F-serratus_M_contig1360.2659.1 ID=prot_F-serratus_M_contig1360.2659.1|Name=mRNA_F-serratus_M_contig1360.2659.1|organism=Fucus serratus male|type=polypeptide|length=285bp VVNVFANTGIHVLVTTRERTVIPPMNRGVMVDVGDMEEEERLELLRKASHback to top mRNA from alignment at F-serratus_M_contig1360:197516..198808- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1360.2659.1 ID=mRNA_F-serratus_M_contig1360.2659.1|Name=mRNA_F-serratus_M_contig1360.2659.1|organism=Fucus serratus male|type=mRNA|length=1293bp|location=Sequence derived from alignment at F-serratus_M_contig1360:197516..198808- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1360:197516..198808- >mRNA_F-serratus_M_contig1360.2659.1 ID=mRNA_F-serratus_M_contig1360.2659.1|Name=mRNA_F-serratus_M_contig1360.2659.1|organism=Fucus serratus male|type=CDS|length=1710bp|location=Sequence derived from alignment at F-serratus_M_contig1360:197516..198808- (Fucus serratus male)back to top |