mRNA_F-serratus_M_contig1360.2659.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1360.2659.1
Unique NamemRNA_F-serratus_M_contig1360.2659.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: D7FH19_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH19_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 4.530e-52
Identity = 130/288 (45.14%), Postives = 174/288 (60.42%), Query Frame = 1
Query:    1 VVNVFANTGIHVLVTTRERTVIPPMNRGVMVDVGDMEEEERLELLRKASHAHGPLPTE-AKQVADDCCMLPLALGIAGAMVKDQPLDASSWRTVHENLKQKTKL-KDMRSEEMSRQSKSIFSTLDASIDILPRTVQEQLLLMAVLSSGVAASSEMLASLWDVDVSDVKTGATALVDRGLLQDVNAQYRLHDLVLEYLQMAIKMDED-LVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKLDRSLMVEEFYRASLKGVTEIEDVQNAGHLLFLV 855
            VVN FA+TG HVLVTTR+R VI  ++ GV  +VGDM EE+ LE+L KAS A GPLP E A+QVA DC MLPLALG+ GA+ KDQPLD  SWR VH+ L++K  + +D+       ++  +FST+D S+  LP   +EQL LMAV++     S   L +       D+  G                YRLHDLVL+YLQ+ + M    L  +A SRQAR+L+R+ V R Y+A +    S+ GLYSLVAL +  + LD S+  +  Y  SL+GV +I   +    LL L+
Sbjct:  373 VVNAFASTGFHVLVTTRQRAVISAVHAGVWTEVGDMSEEDALEVLSKASQADGPLPAEEARQVALDCGMLPLALGMIGALAKDQPLDPLSWRAVHKKLQEKRAMFRDV-------ENGKLFSTMDTSVCNLPSNQREQLQLMAVMAFW---SRRNLGNARKPVGPDMPDG----------------YRLHDLVLDYLQLIVTMGGGRLAGEASSRQARYLARLGVFRQYNA-RGHNVSTGGLYSLVALWNSAKNLDGSVNADACYSKSLEGVKDIGITREVAWLLLLL 633          
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 3.980e-35
Identity = 107/291 (36.77%), Postives = 163/291 (56.01%), Query Frame = 1
Query:    1 VVNVFANTGIHVLVTTRERTVIPPMNRGVMVDVGDMEEEERLELLRKASHAHGP----LPTEAKQVADDCCMLPLALGIAGAM--VKDQPLDASSWRTVHENLKQKTKLKDMRSEEMSRQSKSIFSTLDASIDILPRTVQEQLLLMAVLSSGVAASSEMLASLWDV-DVSDVKTGATALVDRGLLQDVNAQ-YRLHDLVLEYLQMAIKMDEDLVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKLDRSLMVEEF-YRASLKGVTEIEDVQNAGHLL 846
            VV  F   G+ VLVTTR+R+++     G ++++GDM E+E LELL K S   G     + T+  +V D C  LPL L IAG+M  VK + L   +W  + E  +  T +      E   +S+++   L AS + L    +E+ L MAVL+ G  A  EML +LW++ DV   K  A  LV++ LLQDV+   YR+HDL+L+YL++ IK D + VKKA + QA++L R++V+ +Y   +K  + + GL+ L  L   ++KL    ++E   YRA L  +   E      + L
Sbjct:  377 VVAAFLGVGLKVLVTTRDRSIVGVP--GGLLELGDMAEDEALELLWKTSGTVGQPGDGVRTQMTKVVDRCGRLPLVLAIAGSMPVVKGKGLKDGAWEELIEEFENVTTIMW----EPGEESRNLDMVLGASFNALAARKREEFLRMAVLAPGAVAPFEMLRNLWEIQDVEGTKEEAEGLVNKCLLQDVDGVGYRVHDLLLKYLRVKIKQDGERVKKATALQAQYLGRLDVVMSY-GDQKHGADNQGLFGLGTLWRCLEKLSGDPVLETASYRAILGELDSCEATAEVANCL 660          
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 4.450e-35
Identity = 110/287 (38.33%), Postives = 163/287 (56.79%), Query Frame = 1
Query:    1 VVNVFANTGIHVLVTTRERTVIPPMNRGVMVDVGDMEEEERLELLRKASHAHGP----LPTEAKQVADDCCMLPLALGIAGAM--VKDQPLDASSWRTVHENLKQKTKLKDMRSEEMSRQSKSIFSTLDASIDILPRTVQEQLLLMAVLSSGVAASSEMLASLWDV-DVSDVKTGATALVDRGLLQDVNAQ-YRLHDLVLEYLQMAIKMDEDLVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKL--DRSLMVEEFYRASLKGVTEIEDVQN 831
            VV+   + G+ VLVTTR+R+V+     G ++++GDM EEE LELL K S   G     + T+  +V   C  LPL L IAG+M  VK + L A +W  + +  +   K   +R E    QS SI   L  S D L    QE+ L M VL++G  A  EML +LW++ D    +  A  LV + LLQ V    YR+HDLVLE+++ +I+ +E++V+KA + QA++L R++VL++Y    +  + + GL+ L AL   V+KL  D  L V   YRASL  +   E  ++
Sbjct:  141 VVDALLSLGLKVLVTTRDRSVVGVS--GGLLELGDMTEEEALELLLKTSRTVGQPGHEVRTQMTKVVVLCGHLPLVLAIAGSMSVVKGKGLTAVAWEELIKEFENVAKKMRVRGE----QSSSIKVVLGTSFDALAARKQEESLKMTVLAAGALAPIEMLRNLWEIEDAEGTREEAEGLVSKCLLQAVGGSGYRVHDLVLEFVKTSIRAEEEMVEKATALQAQYLGRVDVLKSY-GDPEHGAGNQGLFFLDALWRSVEKLSGDPELEVAS-YRASLGELESCEATED 419          
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.230e-33
Identity = 112/284 (39.44%), Postives = 160/284 (56.34%), Query Frame = 1
Query:    1 VVNVFANTGIHVLVTTRERTVIP-PMNRGVMVDVGDMEEEERLELLRKASHAHGP----LPTEAKQVADDCCMLPLALGIAGAM--VKDQPLDASSWRTVHENLKQKTKLKDMRSEEMSRQSKSIFSTLDASIDILPRTVQEQLLLMAVLSSGVAASSEMLASLWDV-DVSDVKTGATALVDRGLLQDVNAQ-YRLHDLVLEYLQMAIKMDEDLVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKL--DRSLMVEEFYRASLKGVTEIE 819
            VV+ F   G  VL+TTR+R+V+  P  R   +++GD+ EEE LELLRK S A G     + T+  +V   C  LPL L IAG+M  V+ + L A +W  + + L+   K    R E    QS S+   L+ S D L    QE+ L MAVL++G  A  EML +LW++ D    +  A  LV + LL  V    YR+HDLVLE+ + +I+ +E+ VKKA + QA++L R++VL +Y    +  +   GL+ L AL   V+KL  D  L V   YRASL+ +   E
Sbjct:  383 VVDAFVPLGFKVLLTTRDRSVVGVPAGR---LELGDVTEEEALELLRKTSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGE----QSSSMKVVLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWEIEDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLESY-GDPEHGTGDQGLFFLDALWRSVEKLSGDPGLEVAS-YRASLEELESCE 657          
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 4.670e-32
Identity = 107/275 (38.91%), Postives = 153/275 (55.64%), Query Frame = 1
Query:    1 VVNVFANTGIHVLVTTRERTVIP-PMNRGVMVDVGDMEEEERLELLRKASHAHGP----LPTEAKQVADDCCMLPLALGIAGAM--VKDQPLDASSWRTVHENLKQKTKLKDMRSEEMSRQSKSIFSTLDASIDILPRTVQEQLLLMAVLSSGVAASSEMLASLWDV-DVSDVKTGATALVDRGLLQDVNAQ-YRLHDLVLEYLQMAIKMDEDLVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKL--DRSLMVEEFYRA 792
            VV+ F   G  VL+TTR+R+V+  P  R   +++GDM EEE LELLRK S   G     + T+  +V   C  LPL L IAG+M  V+ + L A +W  + + L+   K    R E    QS S+   L+ S D L    QE+ L MAVL++G  A  EML +LW+V D    +  A  LV + LL  V    YR+HDLVLE+ + +I+ +E+ VKKA + QA++L R++VL  Y    +  +   GL+ L AL   V+KL  D  L V  ++ +
Sbjct:  400 VVDAFVPLGFKVLLTTRDRSVVGLPAGR---LELGDMTEEEALELLRKTSGTVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGE----QSSSMKVVLETSFDSLAVRKQEEFLKMAVLAAGALAPIEMLRNLWEVEDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLEGY-GDPEHGAGGQGLFFLDALWRSVEKLSGDPELEVASYHNS 666          
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 2.190e-31
Identity = 104/294 (35.37%), Postives = 160/294 (54.42%), Query Frame = 1
Query:    1 VVNVFANTGIHVLVTTRERTVI-PPMNRGVMVDVGDMEEEERLELLRKASHAHGP---LPTEAKQVADDCCMLPLALGIAGAM--VKDQPLDASSWRTVHENLKQKTKLKDMRSEEMSRQSKSIFSTLDASIDILPRTVQEQLLLMAVLSSGVAASSEMLASLWDV-DVSDVKTGATALVDRGLLQDVNAQ-YRLHDLVLEYLQMAIKMDEDLVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKLDRSLMVE-EFYRASLKGVTEIEDVQNAGHLLFLV 855
            VV+ F   G  +L+TTR+R+++  P  R   +++GDM EEE LELLRK S    P   +  +  +V   C  LPL L IAG+M  VK + L A +W  + +  +   K    R     +QS SI   L+ + D L    Q++ L+MAVL++G  A  EML++LW++ D       A  LV + LL  V    YR+HDLVL++ + +I+ +E+ VK+A + QA++L R++V+ +Y    +  +   G++ L AL   V+KL     +E   YRASL  +   E  + A    F V
Sbjct:  185 VVDAFVPLGFKLLLTTRDRSIVCDPAGR---LELGDMTEEEALELLRKTSGTVDPGDDVRMKMTKVVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKEFENVAKKMRAR----GQQSSSIKVVLETTFDSLATRKQKEFLMMAVLAAGALAPIEMLSNLWEIEDAEGTHAEAEGLVSKYLLHAVGGGGYRMHDLVLDFAKTSIRAEEETVKRATALQAQYLGRLDVVESY-GDPEHGAGDQGIFFLDALWRSVEKLSGDPQLEVASYRASLGALEWGEATEAAARSYFSV 470          
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: A0A6H5JSG2_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG2_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 8.880e-31
Identity = 104/288 (36.11%), Postives = 156/288 (54.17%), Query Frame = 1
Query:    1 VVNVFANTGIHVLVTTRERTVIPPMNRGVMVDVGDMEEEERLELLRKASHAHGPLPTEAKQVADDCCMLPLALGIAGAM--VKDQPLDASSWRTVHENL---KQKTKLKDMRSEEMSRQSKS-IFSTLDASIDILPRTVQEQLLLMAVLSSGVAASSEMLASLWDVDVSDVKTGATALVDRGLLQDVNAQYRLHDLVLEYLQMAIKMDEDLVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKLDRSLMVE-EFYRASLKGVTEIE---DVQNA 834
            VVN    TG+ ++VTTR  +V     RG++V  GDME+ E  ELLRK S A      EA QVA DC   PL L IAG++  V++ P  A +WR +H  +   K+  +   M ++     S+S +F  L  S + L    Q+  L + VL+ GV A   MLA+LWD D+   K  A+A V R LL +    + +HDL+L+++ +  + +  +V++A  RQ  +LSR+ V+  Y    +   S  G+YSL++L   V KL  +  ++ E Y  SL+ + E     DV NA
Sbjct:  334 VVNALRPTGLQIVVTTRLASV----GRGMIV--GDMEDGEARELLRKKSGAVALPAPEANQVARDCGCHPLTLAIAGSLRCVREAPDSALAWRELHSEIGRIKRSRRGLQMTTDSDEEPSQSPLFPVLRLSFERLRVQEQDSFLSLVVLARGVPAPVAMLANLWDKDMKGAKKEASAFVGRSLLIEEREAFVVHDLLLDFIDVMCQHESGVVQRAVMRQTHYLSRLPVVWRYCRKGE---SLEGMYSLISLWRPVMKLSGNEKLDVEAYENSLRELGEEHEPIDVANA 612          
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 1.460e-30
Identity = 104/277 (37.55%), Postives = 155/277 (55.96%), Query Frame = 1
Query:    1 VVNVFANTGIHVLVTTRE-RTVIPPMNRGVMVDVGDMEEEERLELLRKASHAHGP----LPTEAKQVADDCCMLPLALGIAGAM--VKDQPLDASSWRTVHENLKQKTKLKDMRSEEMSRQSKSIFSTLDASIDILPRTVQEQLLLMAVLSSGVAASSEMLASLWDV-DVSDVKTGATALVDRGLLQDV-NAQYRLHDLVLEYLQMAIKMDEDLVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKLDRSLMVE-EFYRASLK 801
            VV+     G  VL+TTR+   V+ P  R   +D+GDM EEE LELLRK S   G     +  +  +V   C  LPL L IAG+M  VK + L A +W  + ++ +   K    R     +QS +I   L+ S D L    QE+ L M+VL++G  A  EML +LW++ D    +  A  LV++ LL  V +  YR+HD+VLE+ + +I+ DE+ V+KA + QA+FL R++VL++Y    +  +   GL+ L +L   V+KL     +E   YRASL+
Sbjct:  358 VVDALVPLGFKVLLTTRDWSVVVVPARR---LDLGDMTEEEALELLRKTSGTVGQPGDYVRMKMTKVVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKSFENVAKKMRAR----GQQSSAIKVVLETSFDSLAVQKQEEFLRMSVLAAGALAPIEMLRNLWEIEDAEGTRDEAEGLVNKCLLHAVGDGGYRVHDMVLEFAKTSIRADEETVEKATALQAQFLGRLDVLKSY-RDPEHGAGDRGLFFLDSLWRSVEKLSGDPELEVTTYRASLR 626          
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.900e-28
Identity = 107/290 (36.90%), Postives = 150/290 (51.72%), Query Frame = 1
Query:    1 VVNVFANTGIHVLVTTRERTVIP-PMNRGVMVDVGDMEEEERLELLRKASHAHGP----LPTEAKQVADDCCMLPLALGIAGAM--VKDQPLDASSWRTVHENLKQKTKLKDMRSEEMSRQSKSIFSTLDASIDILPRTVQEQLLLMAVLSSG-----------------------------VAASSEMLASLWDV-DVSDVKTGATALVDRGLLQDVNAQ-YRLHDLVLEYLQMAIKMDEDLVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKL 756
            VV+ F   G  VL+TTR+R+V+  P  R   ++VGDM EEE LELLRK+S A G     + T+  +V   C  LPL L IAG+M  VK + L A +W+ + ENL+   K    R E    QS SI + L+ S D L    QE+ L +AVL++                                A  EML +LW++ D    +  A  LV + LL  V    YR+HDLVLEY +  I+ D ++V+K  + QA FL R++VL++Y   +    + S L+ L AL   V+KL
Sbjct:  346 VVDAFVPLGFKVLLTTRDRSVVVVPAGR---LEVGDMTEEEALELLRKSSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVKGKGLTAVAWKELAENLENVAKKMRARGE----QSSSINAVLETSFDSLAVRKQEEFLKLAVLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAPIEMLRNLWEIEDAEGTRDEAEGLVSKCLLHAVGGGGYRVHDLVLEYAKTRIRADAEMVRKVTALQAHFLGRLDVLKSYRDPEHGAGNQS-LFFLDALWRSVEKL 627          
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 3.180e-28
Identity = 102/283 (36.04%), Postives = 150/283 (53.00%), Query Frame = 1
Query:    1 VVNVFANTGIHVLVTTRERTVIPPMNRGVMVDVGDMEEEERLELLRKASHAHG----PLPTEAKQVADDCCMLPLALGIAGAM--VKDQPLDASSWRTVHENLKQK-TKLKDMRSEEMSRQSKSIFSTLDASIDILPRTVQEQLLLMAVLSSGVAASSEMLASLWDV-DVSDVKTGATALVDRGLLQDVNAQ-YRLHDLVLEYLQMAIKMDEDLVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQKLDRSLMVE-EFYRASLKGVTEIE 819
            VV+     G  VLVTTR+R+V+    R   +++GDM EEE LELL K S   G     + T   +V   C  LPL L IAG++  VK + L A +W  + + L+   TK+     E     S S+   L+ S D L    ++     AVL+ G  AS+EML +LW+  D    +  A  LV + LLQDV    YR+HDLVL+++++ IK D ++ KK  + QA+FL R+ VL++Y   +   + + GL+ L AL   V++L     +E   Y  SL  +   E
Sbjct:  277 VVDALLPLGFKVLVTTRDRSVVGVPTR--CLELGDMTEEEALELLLKTSGTVGRPGDSVRTVMTKVVTLCGRLPLVLAIAGSLPVVKGKGLTAGAWGKLIDELENVVTKM-----EASLEDSNSLNVVLETSFDALTFRKKQAFKKTAVLAPGAVASTEMLLNLWETEDTGGTREDAEGLVSKCLLQDVGGGGYRVHDLVLDFVKIKIKADMEMAKKIAALQAQFLGRLNVLKSYEHPEHG-AGNQGLFVLDALWRSVEQLSGDPKLEVPSYSTSLAALESCE 551          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1360.2659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FH19_ECTSI4.530e-5245.14NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LPV9_ECTSI3.980e-3536.77NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
A0A6H5LJA6_9PHAE4.450e-3538.33NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G720_ECTSI1.230e-3339.44NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G722_ECTSI4.670e-3238.91NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7FUD7_ECTSI2.190e-3135.37NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5JSG2_9PHAE8.880e-3136.11AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LGG5_ECTSI1.460e-3037.55NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KXS7_9PHAE1.900e-2836.90NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KU94_9PHAE3.180e-2836.04NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1360contigF-serratus_M_contig1360:197516..198808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.2
Seed ortholog evalue3.3e-46
Seed eggNOG ortholog2880.D7FH19
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Exons3
Model size857
Cds size855
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1360.2659.1prot_F-serratus_M_contig1360.2659.1Fucus serratus malepolypeptideF-serratus_M_contig1360 197516..198808 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929342.11202-CDS-F-serratus_M_contig1360:197515..1978901622929342.11202-CDS-F-serratus_M_contig1360:197515..197890Fucus serratus maleCDSF-serratus_M_contig1360 197516..197890 -
1690962806.819589-CDS-F-serratus_M_contig1360:197515..1978901690962806.819589-CDS-F-serratus_M_contig1360:197515..197890Fucus serratus maleCDSF-serratus_M_contig1360 197516..197890 -
1622929342.1221926-CDS-F-serratus_M_contig1360:198122..1984191622929342.1221926-CDS-F-serratus_M_contig1360:198122..198419Fucus serratus maleCDSF-serratus_M_contig1360 198123..198419 -
1690962806.8315346-CDS-F-serratus_M_contig1360:198122..1984191690962806.8315346-CDS-F-serratus_M_contig1360:198122..198419Fucus serratus maleCDSF-serratus_M_contig1360 198123..198419 -
1622929342.1357589-CDS-F-serratus_M_contig1360:198625..1988081622929342.1357589-CDS-F-serratus_M_contig1360:198625..198808Fucus serratus maleCDSF-serratus_M_contig1360 198626..198808 -
1690962806.8409853-CDS-F-serratus_M_contig1360:198625..1988081690962806.8409853-CDS-F-serratus_M_contig1360:198625..198808Fucus serratus maleCDSF-serratus_M_contig1360 198626..198808 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1360.2659.1

>prot_F-serratus_M_contig1360.2659.1 ID=prot_F-serratus_M_contig1360.2659.1|Name=mRNA_F-serratus_M_contig1360.2659.1|organism=Fucus serratus male|type=polypeptide|length=285bp
VVNVFANTGIHVLVTTRERTVIPPMNRGVMVDVGDMEEEERLELLRKASH
AHGPLPTEAKQVADDCCMLPLALGIAGAMVKDQPLDASSWRTVHENLKQK
TKLKDMRSEEMSRQSKSIFSTLDASIDILPRTVQEQLLLMAVLSSGVAAS
SEMLASLWDVDVSDVKTGATALVDRGLLQDVNAQYRLHDLVLEYLQMAIK
MDEDLVKKACSRQARFLSRIEVLRTYSAGKKWFSSSSGLYSLVALLSVVQ
KLDRSLMVEEFYRASLKGVTEIEDVQNAGHLLFLV
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mRNA from alignment at F-serratus_M_contig1360:197516..198808-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1360.2659.1 ID=mRNA_F-serratus_M_contig1360.2659.1|Name=mRNA_F-serratus_M_contig1360.2659.1|organism=Fucus serratus male|type=mRNA|length=1293bp|location=Sequence derived from alignment at F-serratus_M_contig1360:197516..198808- (Fucus serratus male)
GTTGTCAACGTATTCGCGAACACGGGCATCCACGTCCTTGTCACCACTCG TGAGAGGACCGTGATCCCACCGATGAACCGGGGAGTGATGGTGGATGTTG GAGATATGGAAGAGGAGGAACGTTTGGAGCTTCTTAGGAAGGCTAGCCAT GCCCATGGGCCTCTACCGACCGAGGCTAAGCAGGTATTTGCATCTTCGGT TAGGTTAACTGTAGTACATTAATCACTCCAATAAAACGTGGAACCAGAGA TGATATGGTGAAAGTCACCAGTAGTACCGTAAGTTACGGTGATATTTCTT GAGCAGCTTTTGCGGTCGAAATGAAACTTCATTTCCGTGCCCTATAGTGC CGAAATCGCAAAAATTGTAATCCATTTCTTCCCAAGCAGGTGGCTGACGA CTGCTGCATGCTGCCTTTAGCTTTGGGCATCGCTGGAGCAATGGTGAAAG ACCAACCTCTCGATGCTTCATCGTGGAGGACGGTGCACGAAAACCTCAAA CAAAAAACCAAGCTGAAGGATATGAGGTCAGAGGAGATGTCACGTCAAAG CAAGAGTATATTCTCTACACTCGATGCAAGTATCGACATCCTTCCAAGGA CTGTACAGGAGCAGCTCCTTCTCATGGCGGTCCTGTCATCCGGAGTCGCT GCAAGCTCTGAAATGTTGGCAAGCCTATGGGACGTGGTAAGAAACTATTT AATACCTGTCCGCTTGGTACATCGGCTCATACACTTCACCTCTATAATAG GAGCAATACCGCTAATAGTCCTCTGCTGCTTGCGTCTCTGTCGTACCGCC GTACCGTCAATACGCTTGGAGAATCTTCGAAACCCACAGATAATGTTTGG TATTAGGTTATCGATGAACGTGGTCGGGCGAACATGACTGTGCCCATTTT TTCTCCTTTTCACTTCAGGACGTGAGCGACGTAAAAACTGGTGCGACTGC TTTAGTGGACCGGGGCCTCCTCCAAGACGTGAACGCGCAATATCGTCTAC ACGATCTGGTGCTGGAGTATCTTCAGATGGCCATCAAAATGGACGAGGAT CTCGTGAAAAAGGCCTGCTCACGCCAAGCTCGGTTCTTGTCTAGAATTGA AGTGCTCCGTACGTACTCGGCTGGCAAGAAATGGTTCAGCAGCAGCAGTG GGCTTTACTCCCTCGTGGCCTTGTTGAGCGTGGTGCAGAAGCTCGACCGG TCTCTTATGGTAGAGGAGTTCTACAGGGCATCCCTGAAAGGCGTGACTGA GATCGAAGACGTGCAGAATGCTGGTCATTTGCTTTTTCTTGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1360:197516..198808-

>mRNA_F-serratus_M_contig1360.2659.1 ID=mRNA_F-serratus_M_contig1360.2659.1|Name=mRNA_F-serratus_M_contig1360.2659.1|organism=Fucus serratus male|type=CDS|length=1710bp|location=Sequence derived from alignment at F-serratus_M_contig1360:197516..198808- (Fucus serratus male)
GTTGTCAACGTATTCGCGAACACGGGCATCCACGTCCTTGTCACCACTCG
TGAGAGGACCGTGATCCCACCGATGAACCGGGGAGTGATGGTGGATGTTG
GAGATATGGAAGAGGAGGAACGTTTGGAGCTTCTTAGGAAGGCTAGCCAT
GCCCATGGGCCTCTACCGACCGAGGCTAAGCAGGTTGTCAACGTATTCGC
GAACACGGGCATCCACGTCCTTGTCACCACTCGTGAGAGGACCGTGATCC
CACCGATGAACCGGGGAGTGATGGTGGATGTTGGAGATATGGAAGAGGAG
GAACGTTTGGAGCTTCTTAGGAAGGCTAGCCATGCCCATGGGCCTCTACC
GACCGAGGCTAAGCAGGTGGCTGACGACTGCTGCATGCTGCCTTTAGCTT
TGGGCATCGCTGGAGCAATGGTGAAAGACCAACCTCTCGATGCTTCATCG
TGGAGGACGGTGCACGAAAACCTCAAACAAAAAACCAAGCTGAAGGATAT
GAGGTCAGAGGAGATGTCACGTCAAAGCAAGAGTATATTCTCTACACTCG
ATGCAAGTATCGACATCCTTCCAAGGACTGTACAGGAGCAGCTCCTTCTC
ATGGCGGTCCTGTCATCCGGAGTCGCTGCAAGCTCTGAAATGTTGGCAAG
CCTATGGGACGTGGTGGCTGACGACTGCTGCATGCTGCCTTTAGCTTTGG
GCATCGCTGGAGCAATGGTGAAAGACCAACCTCTCGATGCTTCATCGTGG
AGGACGGTGCACGAAAACCTCAAACAAAAAACCAAGCTGAAGGATATGAG
GTCAGAGGAGATGTCACGTCAAAGCAAGAGTATATTCTCTACACTCGATG
CAAGTATCGACATCCTTCCAAGGACTGTACAGGAGCAGCTCCTTCTCATG
GCGGTCCTGTCATCCGGAGTCGCTGCAAGCTCTGAAATGTTGGCAAGCCT
ATGGGACGTGGACGTGAGCGACGTAAAAACTGGTGCGACTGCTTTAGTGG
ACCGGGGCCTCCTCCAAGACGTGAACGCGCAATATCGTCTACACGATCTG
GTGCTGGAGTATCTTCAGATGGCCATCAAAATGGACGAGGATCTCGTGAA
AAAGGCCTGCTCACGCCAAGCTCGGTTCTTGTCTAGAATTGAAGTGCTCC
GTACGTACTCGGCTGGCAAGAAATGGTTCAGCAGCAGCAGTGGGCTTTAC
TCCCTCGTGGCCTTGTTGAGCGTGGTGCAGAAGCTCGACCGGTCTCTTAT
GGTAGAGGAGTTCTACAGGGCATCCCTGAAAGGCGTGACTGAGATCGAAG
ACGTGCAGAATGCTGGTCATTTGCTTTTTCTTGTGGACGTGAGCGACGTA
AAAACTGGTGCGACTGCTTTAGTGGACCGGGGCCTCCTCCAAGACGTGAA
CGCGCAATATCGTCTACACGATCTGGTGCTGGAGTATCTTCAGATGGCCA
TCAAAATGGACGAGGATCTCGTGAAAAAGGCCTGCTCACGCCAAGCTCGG
TTCTTGTCTAGAATTGAAGTGCTCCGTACGTACTCGGCTGGCAAGAAATG
GTTCAGCAGCAGCAGTGGGCTTTACTCCCTCGTGGCCTTGTTGAGCGTGG
TGCAGAAGCTCGACCGGTCTCTTATGGTAGAGGAGTTCTACAGGGCATCC
CTGAAAGGCGTGACTGAGATCGAAGACGTGCAGAATGCTGGTCATTTGCT
TTTTCTTGTG
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