mRNA_F-serratus_M_contig1356.2637.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1356.2637.1
Unique NamemRNA_F-serratus_M_contig1356.2637.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1356.2637.1 vs. uniprot
Match: A0A6H5L244_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L244_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.770e-21
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:   82 IHNITPNMMEMARHTNGADMELYEFVTAKFCNRLRDTGLLETAVVQNELGRRDQLEERCNNASWIAGTLERFEPLTPKDCRLFEPLPRP 348
            I +ITP + E A   N  D  L+EF++AKFC RLR+TGLL   +V  +L   + L+ RCN+ +W   TLERF P+TP++CRL+EP  +P
Sbjct:  298 IKHITPELREAASSANAVDEALHEFISAKFCERLRETGLLHHPLVSAQLATYEPLDHRCNDETWAKETLERFAPITPQECRLYEPFDKP 386
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BLAST of mRNA_F-serratus_M_contig1356.2637.1 vs. uniprot
Match: D7FWY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWY0_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 4.130e-20
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:   43 PQHERENLKKKDEIHNITPNMMEMARHTNGADMELYEFVTAKFCNRLRDTGLLETAVVQNELGRRDQLEERCNNASWIAGTLERFEPLTPKDCRLFEP 336
            PQ      K ++ I +ITP + + AR  N  D  L+EFV+AKFC RLR+TGLL   +V  EL   + LE RCN+ +W   TLERF P+ P +CRL++P
Sbjct:  298 PQRHNTGSKHEEGIKHITPELRDAARSANAVDEALHEFVSAKFCERLRETGLLHHPLVGAELATYEPLERRCNDETWAKDTLERFAPIMPDECRLYQP 395
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BLAST of mRNA_F-serratus_M_contig1356.2637.1 vs. uniprot
Match: A0A6H5KAL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL5_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.070e-10
Identity = 43/144 (29.86%), Postives = 61/144 (42.36%), Query Frame = 1 
Query:   43 PQHERENLKKKDEIHNITPNMMEMARHTNGADMELYEFVTAKFCNRLRDTGLLETAVVQNELGRRDQLEER----------------------------------------------CNNASWIAGTLERFEPLTPKDCRLFEP 336
            PQ +    K ++ + +ITP + + AR  N  D  L+E V+AKFC RLR+ GLL   +V  EL   + LE R                                              CN+ +W   TLERF P+ P +CRL++P
Sbjct:  282 PQRQNTGAKHEEGMKHITPELRDAARSANAVDEALHELVSAKFCERLREAGLLHHPLVVAELATYEPLEHRYAIGFVLCQAFGWGEADLRVWPCMIRCSRSETPSFFALPLSVSVPRCNDETWAKDTLERFAPIMPDECRLYQP 425
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1356.2637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L244_9PHAE3.770e-2148.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FWY0_ECTSI4.130e-2046.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAL5_9PHAE1.070e-1029.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1356contigF-serratus_M_contig1356:157231..157834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size416
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1356.2637.1prot_F-serratus_M_contig1356.2637.1Fucus serratus malepolypeptideF-serratus_M_contig1356 157287..157732 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929338.317342-UTR-F-serratus_M_contig1356:157230..1572861622929338.317342-UTR-F-serratus_M_contig1356:157230..157286Fucus serratus maleUTRF-serratus_M_contig1356 157231..157286 -
1690962805.160418-UTR-F-serratus_M_contig1356:157230..1572861690962805.160418-UTR-F-serratus_M_contig1356:157230..157286Fucus serratus maleUTRF-serratus_M_contig1356 157231..157286 -
1622929338.3764663-UTR-F-serratus_M_contig1356:157732..1578341622929338.3764663-UTR-F-serratus_M_contig1356:157732..157834Fucus serratus maleUTRF-serratus_M_contig1356 157733..157834 -
1690962805.1902084-UTR-F-serratus_M_contig1356:157732..1578341690962805.1902084-UTR-F-serratus_M_contig1356:157732..157834Fucus serratus maleUTRF-serratus_M_contig1356 157733..157834 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929338.3370483-CDS-F-serratus_M_contig1356:157286..1573921622929338.3370483-CDS-F-serratus_M_contig1356:157286..157392Fucus serratus maleCDSF-serratus_M_contig1356 157287..157392 -
1690962805.1737359-CDS-F-serratus_M_contig1356:157286..1573921690962805.1737359-CDS-F-serratus_M_contig1356:157286..157392Fucus serratus maleCDSF-serratus_M_contig1356 157287..157392 -
1622929338.3523128-CDS-F-serratus_M_contig1356:157580..1577321622929338.3523128-CDS-F-serratus_M_contig1356:157580..157732Fucus serratus maleCDSF-serratus_M_contig1356 157581..157732 -
1690962805.1814628-CDS-F-serratus_M_contig1356:157580..1577321690962805.1814628-CDS-F-serratus_M_contig1356:157580..157732Fucus serratus maleCDSF-serratus_M_contig1356 157581..157732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1356.2637.1

>prot_F-serratus_M_contig1356.2637.1 ID=prot_F-serratus_M_contig1356.2637.1|Name=mRNA_F-serratus_M_contig1356.2637.1|organism=Fucus serratus male|type=polypeptide|length=86bp
MMEMARHTNGADMELYEFVTAKFCNRLRDTGLLETAVVQNELGRRDQLEE
RCNNASWIAGTLERFEPLTPKDCRLFEPLPRPEDL*
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mRNA from alignment at F-serratus_M_contig1356:157231..157834-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1356.2637.1 ID=mRNA_F-serratus_M_contig1356.2637.1|Name=mRNA_F-serratus_M_contig1356.2637.1|organism=Fucus serratus male|type=mRNA|length=604bp|location=Sequence derived from alignment at F-serratus_M_contig1356:157231..157834- (Fucus serratus male)
CGAAGGACCCTGAAAGATGAAGGAGAGGAGGAGGAGGAGGAACCACAGCA
TGAGCGGGAAAACCTGAAGAAAAAGGATGAGATACACAACATCACCCCCA
ACATGATGGAGATGGCTCGGCACACAAACGGCGCGGACATGGAGCTATAC
GAGTTCGTGACCGCTAAGTTTTGCAACCGGCTGCGCGATACCGGTCTACT
GGAAACGGCCGTCGTCCAAAACGAGCTGGGTCGGCGTGACCAGCTGGAGG
AGAGGTGCGAACGAGCCCTGAATGCGCGTAATACGTACAGCACTATAGAT
TTGAAGCCAGTGCGTCTAATAGAGTACACTACCTCCTCCGCCCTTCTAAG
ATTTGCTAGTACTAGACCAGATTGGACTGCGCGGTATCTGACTACACTGA
TTCTGCGATACTTCGATACGACGTCTGTTTATGTTACTTCAGGTGCAACA
ACGCGTCGTGGATCGCGGGTACCTTGGAGCGCTTCGAGCCGCTCACGCCC
AAGGACTGTAGGCTGTTCGAACCGCTCCCACGGCCAGAAGACCTTTAGGA
TCTTTGCCCTCCATGCAAAGCGAGTTTGTCAGAAATGTTCGATGCGGAAT
GGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1356:157231..157834-

>mRNA_F-serratus_M_contig1356.2637.1 ID=mRNA_F-serratus_M_contig1356.2637.1|Name=mRNA_F-serratus_M_contig1356.2637.1|organism=Fucus serratus male|type=CDS|length=516bp|location=Sequence derived from alignment at F-serratus_M_contig1356:157231..157834- (Fucus serratus male)
ATGATGGAGATGGCTCGGCACACAAACGGCGCGGACATGGAGCTATACGA
GTTCGTGACCGCTAAGTTTTGCAACCGGCTGCGCGATACCGGTCTACTGG
AAACGGCCGTCGTCCAAAACGAGCTGGGTCGGCGTGACCAGCTGGAGGAG
AGATGATGGAGATGGCTCGGCACACAAACGGCGCGGACATGGAGCTATAC
GAGTTCGTGACCGCTAAGTTTTGCAACCGGCTGCGCGATACCGGTCTACT
GGAAACGGCCGTCGTCCAAAACGAGCTGGGTCGGCGTGACCAGCTGGAGG
AGAGGTGCAACAACGCGTCGTGGATCGCGGGTACCTTGGAGCGCTTCGAG
CCGCTCACGCCCAAGGACTGTAGGCTGTTCGAACCGCTCCCACGGCCAGA
AGACCTTTAGGTGCAACAACGCGTCGTGGATCGCGGGTACCTTGGAGCGC
TTCGAGCCGCTCACGCCCAAGGACTGTAGGCTGTTCGAACCGCTCCCACG
GCCAGAAGACCTTTAG
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