mRNA_F-serratus_M_contig1353.2632.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1353.2632.1
Unique NamemRNA_F-serratus_M_contig1353.2632.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1353.2632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1353contigF-serratus_M_contig1353:260698..261717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1020
Cds size1020
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929337.0813613-CDS-F-serratus_M_contig1353:260697..2617171622929337.0813613-CDS-F-serratus_M_contig1353:260697..261717Fucus serratus maleCDSF-serratus_M_contig1353 260698..261717 +
1690962804.6206667-CDS-F-serratus_M_contig1353:260697..2617171690962804.6206667-CDS-F-serratus_M_contig1353:260697..261717Fucus serratus maleCDSF-serratus_M_contig1353 260698..261717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1353.2632.1prot_F-serratus_M_contig1353.2632.1Fucus serratus malepolypeptideF-serratus_M_contig1353 260698..261717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1353.2632.1

>prot_F-serratus_M_contig1353.2632.1 ID=prot_F-serratus_M_contig1353.2632.1|Name=mRNA_F-serratus_M_contig1353.2632.1|organism=Fucus serratus male|type=polypeptide|length=340bp
MCQQCGELEHFPDDCVITTTVNMPAPSPHSYTAPSSGAHTAQYGTGAHAS
QHSTGAHVAQYHTSPPSTWTSTEYDLQSTSSAHGPPSNRASFAPAQPMPP
PSPRSVGSPPSPAPPSDSGWSFTSGPSRALQAQYVPPGEFSSSSLSDGEP
VGSEGGSYLPSAFVGQPVGVDQVGDVWIGDSGATTHMTWNAEMMYDTKPP
SPHRSRIILGDGSIRKVQFVGKLDLVFHSKTDHAATLHDVSFVPDLGFNL
FSFHVVQEKHNILLTKTGAHLLGGRLVFPRRKNGSPLCATRVMQGAHASA
SNALATFTNPPSPVQYSSVTSPGAHEPSRTSSSSRRGNAG
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mRNA from alignment at F-serratus_M_contig1353:260698..261717+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1353.2632.1 ID=mRNA_F-serratus_M_contig1353.2632.1|Name=mRNA_F-serratus_M_contig1353.2632.1|organism=Fucus serratus male|type=mRNA|length=1020bp|location=Sequence derived from alignment at F-serratus_M_contig1353:260698..261717+ (Fucus serratus male)
ATGTGCCAGCAGTGTGGTGAGTTGGAGCATTTCCCCGATGACTGTGTAAT
AACCACAACCGTGAACATGCCCGCACCATCACCACATTCGTATACGGCAC
CATCTTCAGGAGCCCATACCGCGCAGTACGGTACCGGAGCCCATGCATCG
CAGCACAGCACGGGAGCTCATGTCGCGCAGTACCACACTTCCCCCCCTTC
CACCTGGACATCCACCGAGTACGATCTTCAATCGACCTCTTCAGCCCACG
GACCTCCGTCAAATCGAGCCAGTTTTGCACCTGCCCAGCCGATGCCACCG
CCGTCGCCCAGATCCGTTGGGTCTCCACCTTCACCGGCGCCTCCGTCGGA
TTCTGGTTGGAGCTTCACCTCTGGGCCATCCCGAGCTCTACAGGCACAAT
ACGTGCCTCCAGGCGAGTTTTCGAGTTCGAGTTTGTCTGATGGGGAGCCA
GTAGGTAGTGAGGGCGGAAGTTACCTTCCTTCGGCATTTGTTGGACAGCC
CGTAGGCGTAGACCAAGTTGGGGATGTCTGGATTGGAGACAGCGGTGCAA
CGACGCACATGACTTGGAACGCTGAAATGATGTATGACACCAAACCCCCA
TCCCCCCACAGATCGAGAATCATCCTAGGTGATGGTTCAATCAGGAAAGT
ACAATTTGTCGGGAAGCTTGACTTGGTGTTTCACAGTAAGACCGATCATG
CGGCCACCCTTCACGACGTATCGTTTGTGCCAGATCTAGGCTTCAACCTG
TTCTCATTCCATGTTGTGCAAGAGAAACATAACATTCTTTTGACCAAAAC
AGGGGCCCACTTGCTGGGTGGTCGTTTAGTTTTCCCCCGTAGGAAAAATG
GGTCGCCTCTGTGTGCTACCAGAGTAATGCAGGGAGCACATGCAAGCGCG
AGTAATGCACTCGCAACATTCACAAACCCCCCTTCCCCTGTACAGTACAG
TAGTGTAACTTCCCCCGGTGCGCACGAACCATCGCGTACGAGTAGTTCTA
GCAGGAGGGGCAACGCGGGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1353:260698..261717+

>mRNA_F-serratus_M_contig1353.2632.1 ID=mRNA_F-serratus_M_contig1353.2632.1|Name=mRNA_F-serratus_M_contig1353.2632.1|organism=Fucus serratus male|type=CDS|length=2040bp|location=Sequence derived from alignment at F-serratus_M_contig1353:260698..261717+ (Fucus serratus male)
ATGTGCCAGCAGTGTGGTGAGTTGGAGCATTTCCCCGATGACTGTGTAAT
AACCACAACCGTGAACATGCCCGCACCATCACCACATTCGTATACGGCAC
CATCTTCAGGAGCCCATACCGCGCAGTACGGTACCGGAGCCCATGCATCG
CAGCACAGCACGGGAGCTCATGTCGCGCAGTACCACACTTCCCCCCCTTC
CACCTGGACATCCACCGAGTACGATCTTCAATCGACCTCTTCAGCCCACG
GACCTCCGTCAAATCGAGCCAGTTTTGCACCTGCCCAGCCGATGCCACCG
CCGTCGCCCAGATCCGTTGGGTCTCCACCTTCACCGGCGCCTCCGTCGGA
TTCTGGTTGGAGCTTCACCTCTGGGCCATCCCGAGCTCTACAGGCACAAT
ACGTGCCTCCAGGCGAGTTTTCGAGTTCGAGTTTGTCTGATGGGGAGCCA
GTAGGTAGTGAGGGCGGAAGTTACCTTCCTTCGGCATTTGTTGGACAGCC
CGTAGGCGTAGACCAAGTTGGGGATGTCTGGATTGGAGACAGCGGTGCAA
CGACGCACATGACTTGGAACGCTGAAATGATGTATGACACCAAACCCCCA
TCCCCCCACAGATCGAGAATCATCCTAGGTGATGGTTCAATCAGGAAAGT
ACAATTTGTCGGGAAGCTTGACTTGGTGTTTCACAGTAAGACCGATCATG
CGGCCACCCTTCACGACGTATCGTTTGTGCCAGATCTAGGCTTCAACCTG
TTCTCATTCCATGTTGTGCAAGAGAAACATAACATTCTTTTGACCAAAAC
AGGGGCCCACTTGCTGGGTGGTCGTTTAGTTTTCCCCCGTAGGAAAAATG
GGTCGCCTCTGTGTGCTACCAGAGTAATGCAGGGAGCACATGCAAGCGCG
AGTAATGCACTCGCAACATTCACAAACCCCCCTTCCCCTGTACAGTACAG
TAGTGTAACTTCCCCCGGTGCGCACGAACCATCGCGTACGAGTAGTTCTA
GCAGGAGGGGCAACGCGGGTATGTGCCAGCAGTGTGGTGAGTTGGAGCAT
TTCCCCGATGACTGTGTAATAACCACAACCGTGAACATGCCCGCACCATC
ACCACATTCGTATACGGCACCATCTTCAGGAGCCCATACCGCGCAGTACG
GTACCGGAGCCCATGCATCGCAGCACAGCACGGGAGCTCATGTCGCGCAG
TACCACACTTCCCCCCCTTCCACCTGGACATCCACCGAGTACGATCTTCA
ATCGACCTCTTCAGCCCACGGACCTCCGTCAAATCGAGCCAGTTTTGCAC
CTGCCCAGCCGATGCCACCGCCGTCGCCCAGATCCGTTGGGTCTCCACCT
TCACCGGCGCCTCCGTCGGATTCTGGTTGGAGCTTCACCTCTGGGCCATC
CCGAGCTCTACAGGCACAATACGTGCCTCCAGGCGAGTTTTCGAGTTCGA
GTTTGTCTGATGGGGAGCCAGTAGGTAGTGAGGGCGGAAGTTACCTTCCT
TCGGCATTTGTTGGACAGCCCGTAGGCGTAGACCAAGTTGGGGATGTCTG
GATTGGAGACAGCGGTGCAACGACGCACATGACTTGGAACGCTGAAATGA
TGTATGACACCAAACCCCCATCCCCCCACAGATCGAGAATCATCCTAGGT
GATGGTTCAATCAGGAAAGTACAATTTGTCGGGAAGCTTGACTTGGTGTT
TCACAGTAAGACCGATCATGCGGCCACCCTTCACGACGTATCGTTTGTGC
CAGATCTAGGCTTCAACCTGTTCTCATTCCATGTTGTGCAAGAGAAACAT
AACATTCTTTTGACCAAAACAGGGGCCCACTTGCTGGGTGGTCGTTTAGT
TTTCCCCCGTAGGAAAAATGGGTCGCCTCTGTGTGCTACCAGAGTAATGC
AGGGAGCACATGCAAGCGCGAGTAATGCACTCGCAACATTCACAAACCCC
CCTTCCCCTGTACAGTACAGTAGTGTAACTTCCCCCGGTGCGCACGAACC
ATCGCGTACGAGTAGTTCTAGCAGGAGGGGCAACGCGGGT
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