mRNA_F-serratus_M_contig135.2617.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig135.2617.1
Unique NamemRNA_F-serratus_M_contig135.2617.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig135.2617.1 vs. uniprot
Match: D7FMM0_ECTSI (DNA repair protein RadA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM0_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 6.730e-6
Identity = 33/62 (53.23%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:    1 QEAETFGFSRVVVPFTPRRRSSAGAVAGHRKDKESGAKRVEASESVASSGSGRGRIEVVECR 186
            QEAETFGFSRVVVPFT + RS+     G      +G  RV A  S A +   RG IEV+ECR
Sbjct:  641 QEAETFGFSRVVVPFTRKNRSARSRGGGR-----AGKARVAAGVSEAGNDGRRGAIEVIECR 697
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BLAST of mRNA_F-serratus_M_contig135.2617.1 vs. uniprot
Match: A0A6H5JQ57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ57_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 2.640e-5
Identity = 32/62 (51.61%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    1 QEAETFGFSRVVVPFTPRRRSSAGAVAGHRKDKESGAKRVEASESVASSGSGRGRIEVVECR 186
            QEAETFGFSRVVVPFT + RS+     G      +G   V A  S A +   RG IEV+ECR
Sbjct:   12 QEAETFGFSRVVVPFTRKNRSTRARGGGR-----AGKATVAAGVSEAGNDGRRGAIEVIECR 68
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig135.2617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMM0_ECTSI6.730e-653.23DNA repair protein RadA n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQ57_9PHAE2.640e-551.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig135contigF-serratus_M_contig135:751209..751394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929335.405543-CDS-F-serratus_M_contig135:751208..7513941622929335.405543-CDS-F-serratus_M_contig135:751208..751394Fucus serratus maleCDSF-serratus_M_contig135 751209..751394 +
1690962803.8031616-CDS-F-serratus_M_contig135:751208..7513941690962803.8031616-CDS-F-serratus_M_contig135:751208..751394Fucus serratus maleCDSF-serratus_M_contig135 751209..751394 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig135.2617.1prot_F-serratus_M_contig135.2617.1Fucus serratus malepolypeptideF-serratus_M_contig135 751209..751394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig135.2617.1

>prot_F-serratus_M_contig135.2617.1 ID=prot_F-serratus_M_contig135.2617.1|Name=mRNA_F-serratus_M_contig135.2617.1|organism=Fucus serratus male|type=polypeptide|length=62bp
QEAETFGFSRVVVPFTPRRRSSAGAVAGHRKDKESGAKRVEASESVASSG
SGRGRIEVVECR
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mRNA from alignment at F-serratus_M_contig135:751209..751394+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig135.2617.1 ID=mRNA_F-serratus_M_contig135.2617.1|Name=mRNA_F-serratus_M_contig135.2617.1|organism=Fucus serratus male|type=mRNA|length=186bp|location=Sequence derived from alignment at F-serratus_M_contig135:751209..751394+ (Fucus serratus male)
CAGGAGGCAGAGACGTTCGGGTTTTCCCGGGTGGTAGTCCCCTTCACCCC
GAGGAGGCGTTCCTCAGCAGGGGCAGTAGCAGGCCACAGGAAGGACAAAG
AGAGCGGAGCGAAACGCGTGGAAGCGTCTGAGTCTGTGGCATCTTCTGGT
AGCGGACGTGGTCGCATCGAAGTCGTGGAGTGCAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig135:751209..751394+

>mRNA_F-serratus_M_contig135.2617.1 ID=mRNA_F-serratus_M_contig135.2617.1|Name=mRNA_F-serratus_M_contig135.2617.1|organism=Fucus serratus male|type=CDS|length=372bp|location=Sequence derived from alignment at F-serratus_M_contig135:751209..751394+ (Fucus serratus male)
CAGGAGGCAGAGACGTTCGGGTTTTCCCGGGTGGTAGTCCCCTTCACCCC
GAGGAGGCGTTCCTCAGCAGGGGCAGTAGCAGGCCACAGGAAGGACAAAG
AGAGCGGAGCGAAACGCGTGGAAGCGTCTGAGTCTGTGGCATCTTCTGGT
AGCGGACGTGGTCGCATCGAAGTCGTGGAGTGCAGGCAGGAGGCAGAGAC
GTTCGGGTTTTCCCGGGTGGTAGTCCCCTTCACCCCGAGGAGGCGTTCCT
CAGCAGGGGCAGTAGCAGGCCACAGGAAGGACAAAGAGAGCGGAGCGAAA
CGCGTGGAAGCGTCTGAGTCTGTGGCATCTTCTGGTAGCGGACGTGGTCG
CATCGAAGTCGTGGAGTGCAGG
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