prot_F-serratus_M_contig135.2616.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig135.2616.1
Unique Nameprot_F-serratus_M_contig135.2616.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length116
Homology
BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: D7FMM0_ECTSI (DNA repair protein RadA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM0_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 2.390e-36
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 0
Query:   49 PMPRMVSWGLNSRSQPSARKALGSSSKTHTIVHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRREQ 115
            PMPRMVSWGLNSRSQPSARKALGS+ KTHTIV+VCEVCGSEHVQWVGRCPTCKEWN VKPFKVRREQ
Sbjct:  111 PMPRMVSWGLNSRSQPSARKALGSNKKTHTIVYVCEVCGSEHVQWVGRCPTCKEWNCVKPFKVRREQ 177          
BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: A0A836CK68_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK68_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.070e-25
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = 0
Query:   48 GPMPRMVSWGLNSRSQPSARKALGSSSKTHTIVHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRRE 114
            G  PR +S+GL SRS PS RKALGS SKTH  V+VCEVCG+E VQWVGRCPTCKEWNSV+  KVRR+
Sbjct:   82 GTRPRFISYGLQSRSAPSTRKALGSGSKTHATVYVCEVCGAEQVQWVGRCPTCKEWNSVREHKVRRD 148          
BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: A0A7S4HL01_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HL01_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.580e-17
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 0
Query:   51 PRMVSWGLN-SRSQPSARKALGSSSKTHTIVHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRR 113
            P M+S+GL   RS PS RKA+G S  + T VHVC  CGSE+V+W+GRCPTCKEWN+++ F+V R
Sbjct:   79 PGMMSFGLGRGRSAPSHRKAVGRSGSSSTSVHVCTNCGSEYVKWIGRCPTCKEWNTIQEFRVNR 142          
BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: A0A7S2JRW8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JRW8_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.010e-16
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 0
Query:   53 MVSWGLNSRSQPSARKALGSSSKTHTIVHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRR 113
            M S+GL  RS P+ RKA+G  +     V VC  CGSE V+W+GRCPTC+EWN+++ F VRR
Sbjct:    1 MHSFGLTGRSAPNQRKAIGKGANAKASVFVCTNCGSEFVKWLGRCPTCQEWNTIQEFSVRR 61          
BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: A0A7S3KWX8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KWX8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.390e-13
Identity = 34/67 (50.75%), Postives = 46/67 (68.66%), Query Frame = 0
Query:   51 PRMVSWGLNS-RSQPSARKALGSSSKTHTIVHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRREQQ 116
            P   S+G N+ RS P+ RK +G +S+  T V++C  CG+E VQW+GRCPTCKEWN++    V R QQ
Sbjct:  109 PSTASFGWNAGRSSPAQRKGMGLASRATTTVYMCTNCGAETVQWMGRCPTCKEWNTLTEHVVTRGQQ 175          
BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: A0A448ZBY4_9STRA (RECA_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBY4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.490e-12
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 0
Query:   67 RKALGSSSKTHTIVHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRR 113
            RKA+G+SSKT T V+VC  CG E VQW GRCPTCKEWN+ +   V+R
Sbjct:   58 RKAMGTSSKTTTTVYVCSNCGGESVQWRGRCPTCKEWNTFQEVAVQR 104          
BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: A0A482SXN0_9ARCH (DNA repair protein RadA n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SXN0_9ARCH)

HSP 1 Score: 67.8 bits (164), Expect = 7.580e-11
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 0
Query:   45 AGVGPMPRMVSWGLNSRSQPSARKALGSSSKTHTIVHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRR 113
            AG+  + R   +G+  R      KALG   K     +VCEVCG+EHV+W GRC +CKEWN++K FKV R
Sbjct:   23 AGLSKLSRKHIYGVAVRHSQLFAKALG--FKASAEAYVCEVCGTEHVKWQGRCNSCKEWNTIKAFKVAR 89          
BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: A0A8J9TFP3_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TFP3_PHATR)

HSP 1 Score: 63.2 bits (152), Expect = 1.240e-9
Identity = 23/45 (51.11%), Postives = 34/45 (75.56%), Query Frame = 0
Query:   70 LGSSSKTHTIVHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRRE 114
            +G+S  +   +H+C  CGSE V+W+GRCPTC+EWN+++   VRRE
Sbjct:    1 MGTSGSSTARIHICGNCGSEFVKWMGRCPTCREWNTLQEHAVRRE 45          
BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: A0A7S3PWA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWA8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.630e-9
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0
Query:   69 ALGSSSKTHTIVHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRR 113
            A+G S      VHVC  CG+E+VQWVG+C TC EWN+V+ ++V R
Sbjct:  134 AMGKSGSGSATVHVCTNCGAEYVQWVGKCSTCNEWNTVQEYRVGR 178          
BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Match: B8C2F0_THAPS (Rad51/RecA-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2F0_THAPS)

HSP 1 Score: 57.8 bits (138), Expect = 2.350e-7
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 0
Query:   80 VHVCEVCGSEHVQWVGRCPTCKEWNSVKPFKVRRE 114
            V+VC  CGSE+VQW GRC TC EWN+V+ FK RR+
Sbjct:    2 VYVCTNCGSEYVQWRGRCGTCLEWNTVQEFKARRK 36          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig135.2616.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMM0_ECTSI2.390e-3694.03DNA repair protein RadA n=1 Tax=Ectocarpus silicul... [more]
A0A836CK68_9STRA1.070e-2573.13P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S4HL01_9STRA2.580e-1759.38Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2JRW8_9STRA2.010e-1654.10Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S3KWX8_9STRA5.390e-1350.75Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A448ZBY4_9STRA6.490e-1263.83RECA_2 domain-containing protein n=1 Tax=Pseudo-ni... [more]
A0A482SXN0_9ARCH7.580e-1147.83DNA repair protein RadA n=1 Tax=archaeon TaxID=190... [more]
A0A8J9TFP3_PHATR1.240e-951.11Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A7S3PWA8_9STRA5.630e-953.33Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
B8C2F0_THAPS2.350e-765.71Rad51/RecA-like protein (Fragment) n=1 Tax=Thalass... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041166LapB, rubredoxin metal binding domainPFAMPF18073Rubredoxin_2coord: 81..108
e-value: 3.3E-11
score: 42.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig135contigF-serratus_M_contig135:729054..731513 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig135.2616.1mRNA_F-serratus_M_contig135.2616.1Fucus serratus malemRNAF-serratus_M_contig135 729054..731515 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig135.2616.1 ID=prot_F-serratus_M_contig135.2616.1|Name=mRNA_F-serratus_M_contig135.2616.1|organism=Fucus serratus male|type=polypeptide|length=116bp
SRRVPPTSARSSSSGGEIEGPYPDDHDHDAGGFKGAGGRGVAPGAGVGPM
PRMVSWGLNSRSQPSARKALGSSSKTHTIVHVCEVCGSEHVQWVGRCPTC
KEWNSVKPFKVRREQQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041166Rubredoxin_2