mRNA_F-serratus_M_contig135.2604.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig135.2604.1
Unique NamemRNA_F-serratus_M_contig135.2604.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig135.2604.1 vs. uniprot
Match: A0A6H5JUU7_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU7_9PHAE)

HSP 1 Score: 344 bits (883), Expect = 1.140e-109
Identity = 179/285 (62.81%), Postives = 217/285 (76.14%), Query Frame = 3 
Query:   15 KEAEAAAALVKNQAKSGTKERIPLTWQQQQQVLAAWTAKG---DGEDIMVKAFNDTIYKKSMITLRDGLWLGDEVVNMYMRMLMQRNREAIASGRLVPKCGIMTSFFFTAISDSGKGYRYAGVKNFTRKAKIDLFGLDRFIFPVNVNKTHWTVGVIDFRRQRLEHYDSLSGRGFEDLHGFEYMVRFVDDESKAKRGSG-MDISHWPRVNVARRPMQRNGFDCGVFACMFADRLSKGIPLDFSQSDITHCREVMTLAILRGERSPSEEERCIEDWGS-PREGFAWW 854
            KEA  AAA+      +  +ER  L+ +Q+ QV  AW+++G   DG DI+V+AFND + K S+ TLR G WLGDEV+N+YM+ L  RNREA+ASG+ VPKCGIM+SFF+T +SD+G+GYRY GVK F +KAKIDLF LD+FIFP+NVN+ HWT+ VI+FR +RLE+YDSL G  F D  GFEYM RFVDDES+ KRG   MDISHWPR N    P QRNG DCGVFA MFADRLSKG PL FSQSDI HCR+V+TLAILRGERSP+E+E  +ED GS P +   WW
Sbjct:  289 KEARLAAAVA-----AAVQERPELSPEQEDQVRDAWSSQGGAADG-DIVVRAFNDMVSKASLRTLRSGEWLGDEVINLYMKSLQARNREAVASGKQVPKCGIMSSFFYTQLSDNGRGYRYQGVKRFLKKAKIDLFDLDKFIFPINVNQNHWTLAVINFRLERLEYYDSL-GAPFGDA-GFEYMARFVDDESRNKRGGQEMDISHWPRFNYQNVPHQRNGIDCGVFASMFADRLSKGRPLSFSQSDIRHCRKVLTLAILRGERSPTEKEAFLEDGGSVPGDAGEWW 565
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BLAST of mRNA_F-serratus_M_contig135.2604.1 vs. uniprot
Match: D7FMM6_ECTSI (Protease, Ulp1 family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM6_ECTSI)

HSP 1 Score: 336 bits (861), Expect = 4.030e-104
Identity = 170/266 (63.91%), Postives = 207/266 (77.82%), Query Frame = 3 
Query:   72 ERIPLTWQQQQQVLAAWTAKG---DGEDIMVKAFNDTIYKKSMITLRDGLWLGDEVVNMYMRMLMQRNREAIASGRLVPKCGIMTSFFFTAISDSGKGYRYAGVKNFTRKAKIDLFGLDRFIFPVNVNKTHWTVGVIDFRRQRLEHYDSLSGRGFEDLHGFEYMVRFVDDESKAKRGSG-MDISHWPRVNVARRPMQRNGFDCGVFACMFADRLSKGIPLDFSQSDITHCREVMTLAILRGERSPSEEERCIEDWGSPR-EGFAWW 854
            ER  L+ +Q+ +V  AW+++G   DG DI+V+AFND + K S+ TLR G WLGDEV+N+YM+ L  RNREA+ASG+ VPKCGIM+SFF+T +SD+G+GYRY GVK F +KAKIDLF LD+FIFP+NVN+ HWT+ VI+FR +RLE+YDSL G  F+D  GFEYM RFVDDES++KRG   MDISHWP  N    P QRN  DCGVFA MFADRLSKG PL FSQSDI HCR+V+TLAILRGERSP+E+E  +ED GS   E   WW
Sbjct:  554 ERPELSPEQEDRVRDAWSSQGGAADG-DIVVRAFNDMVSKASLRTLRSGEWLGDEVINLYMKSLQARNREAVASGKQVPKCGIMSSFFYTQLSDNGRGYRYQGVKRFLKKAKIDLFDLDKFIFPINVNQNHWTLAVINFRLERLEYYDSL-GAPFDDA-GFEYMARFVDDESRSKRGGQEMDISHWPSFNYQNVPHQRNEIDCGVFASMFADRLSKGRPLSFSQSDIRHCRKVLTLAILRGERSPTEKEAFLEDGGSVLGEAGEWW 816
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BLAST of mRNA_F-serratus_M_contig135.2604.1 vs. uniprot
Match: A0A7S2PD21_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PD21_9STRA)

HSP 1 Score: 175 bits (444), Expect = 6.040e-50
Identity = 89/236 (37.71%), Postives = 137/236 (58.05%), Query Frame = 3 
Query:   81 PLTWQQQQQVLAAWTAKGDGEDIMVKAFNDTIYKKSMITLRDGLWLGDEVVNMYMRMLMQRNREAIASGRLVPKCGIMTSFFFTAISDSGKGYRYAGVKNFTRK-AKIDLFGLDRFIFPVNVNKTHWTVGVIDFRRQRLEHYDSLSGRGFEDLHGFEYMVRFVDDESKAKRGSGMDISHWPRVNVAR-RPMQRNGFDCGVFACMFADRLSKGIPLDFSQSDITHCREVMTLAILRG 782
            PLT ++Q  V  A    G   +I+  +  DT+ ++SM  L+ G WL DEV++ ++  L +R+ +         +     SFF + + D   GYRY  VK +++K A  D+F LD+ +FP+NV   HWT  V   + ++++ YDS+ G G   ++G   ++R+ +DE K K+ + +D S W  V+     P Q NGFDCGVF CMFAD LS+ +PL FSQ  +T CRE + L+I+ G
Sbjct:    2 PLTEKEQSIVQTAIFGMGPPSEILATSDTDTVQRESMRRLQPGQWLNDEVIHYFLLCLARRDEQMCKKDTNRKRSHFFKSFFVSKLMDEASGYRYQNVKRWSKKVAGKDVFALDKIVFPINVGGVHWTCAVAFMQEKKIQFYDSMGGGGQRYVNG---LLRYFEDEHKDKKKASLDTSEWNLVSCQPDTPQQLNGFDCGVFTCMFADFLSRDMPLIFSQEHVTECRERIALSIMNG 234
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BLAST of mRNA_F-serratus_M_contig135.2604.1 vs. uniprot
Match: A0A7S2V080_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V080_9STRA)

HSP 1 Score: 168 bits (425), Expect = 9.490e-47
Identity = 84/219 (38.36%), Postives = 129/219 (58.90%), Query Frame = 3 
Query:  132 GDGEDIMVKAFNDTIYKKSMITLRDGLWLGDEVVNMYMRMLMQRNREAIA-SGRLVPKCGIMTSFFFTAISDSGKGYRYAGVKNFTRKAKIDLFGLDRFIFPVNVNKTHWTVGVIDFRRQRLEHYDSLSGRGFEDLHGFEYMVRFVDDESKAKRGSGMDISHWPRVNVAR-RPMQRNGFDCGVFACMFADRLSKGIPLDFSQSDITHCREVMTLAILRG 782
            G    ++    N  + ++ +  L   +WL DEV+N+Y+ +L  R +  +A SGR  P+   M SFF   +    +GYRYA V+ +TR+ K+D+F  +R + PVNV   HW +  +   ++R+++YDS+ G G   L     + +++ DE K K+   +DI+ W  V   +  P Q NG DCGVFACMFAD +S+G+PL FSQ D+   RE + LAIL+G
Sbjct:   52 GPPSQVVANLHNVQLQREKIKCLEPTVWLLDEVINLYINLLEDREKRHMAESGRTTPRAVFMNSFFMARLFVD-EGYRYANVRRWTRRRKLDVFSAERVVVPVNVGNMHWCLACVHVPQKRIQYYDSMGGAGRNYLGA---LAQYLQDEMKDKKKETLDINDWEMVGTVQGTPQQNNGCDCGVFACMFADYVSEGLPLSFSQKDMPLFREKIALAILQG 266
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BLAST of mRNA_F-serratus_M_contig135.2604.1 vs. uniprot
Match: A0A7S1BEB7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BEB7_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.400e-46
Identity = 94/237 (39.66%), Postives = 142/237 (59.92%), Query Frame = 3 
Query:   81 PLTWQQQQQVLAA-WTAKGDGEDIMVKAFNDTIYKKSMITLRDGLWLGDEVVNMYMRMLMQRNREAIASGRLVPKCGIMTSFFFTAISDSGKGYRYAGVKNFTRKAK-IDLFGLDRFIFPVNVNKTHWTVGVIDFRRQRLEHYDSLSGRGFEDLHGFEYMVRFVDDESKAKRGSGMDISHWPRV-NVARRPMQRNGFDCGVFACMFADRLSKGIPLDFSQSDITHCREVMTLAILRG 782
            PLT  +Q QV A  +  KG G DI+  +  D++ + S+  LR G+WL DEV++ ++ ML +R+     S     +     SFF T + D  +GY Y+ VK +++K    D+F LD+ I PVNV+ +HWT  VI  +++R+++YDS+   G + L G   ++R++ DE KAK+   +D S W  V +    P Q NG+DCGVF CMFAD +S+   L F+Q  +T CRE + L+IL G
Sbjct:  367 PLTSDEQNQVHAIIFGRKGQGTDIIATSETDSVQRDSLRRLRPGVWLNDEVIHYFLLMLARRDEAICRSDPSRRRSHFFKSFFVTKLLDE-RGYCYSNVKRWSKKVPGKDIFLLDKIICPVNVHNSHWTCAVIFVKKKRIQYYDSMGAPGLDTLKG---LLRYLVDEYKAKKNKVLDTSEWKLVPSEPDTPQQANGYDCGVFTCMFADFISRDFALTFTQDHVTECRERVALSILNG 599
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BLAST of mRNA_F-serratus_M_contig135.2604.1 vs. uniprot
Match: A0A0N7L7Z0_PLAHL (ULP_PROTEASE domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L7Z0_PLAHL)

HSP 1 Score: 168 bits (425), Expect = 1.850e-44
Identity = 85/219 (38.81%), Postives = 129/219 (58.90%), Query Frame = 3 
Query:  129 KGDGEDIMVKAFNDTIYKKSMITLRDGLWLGDEVVNMYMRMLMQRNREAIASGRLVPKCGIMTSFFFTAISDSGKGYRYAGVKNFTRKAKIDLFGLDRFIFPVNVNKTHWTVGVIDFRRQRLEHYDSLSGRGFEDLHGFEYMVRFVDDESKAKRGSGMDISHWPRVNVA-RRPMQRNGFDCGVFACMFADRLSKGIPLDFSQSDITHCREVMTLAILRG 782
            +G  E+++V+ +N TI ++ +  L    WL DEV+N Y++M+ +R+ E + +G L  +     SFF+T +S++G  Y Y  V+ +TRK  ID+F +D+  FP+NV   HW + VI    +R+++YDS+ G G   L   + ++R++ DES+ KR    +   W  V      P Q+NG DCGVF+CMFAD LS   PL F Q DI   R  M L + RG
Sbjct:  279 EGSIEEVLVEKYNVTITRRHLQCLLPTTWLNDEVINFYLQMMSERDEELVKAGHLAKRSHFFNSFFYTKVSENG--YNYINVRRWTRK--IDVFAMDKIFFPINVANMHWCMAVIFMTEKRIQYYDSMHGSGASCL---KVLLRYLHDESEHKRKEKFNDEGWELVTTTFDTPQQKNGSDCGVFSCMFADYLSLNKPLSFVQKDIPFHRHRMVLHVSRG 490
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BLAST of mRNA_F-serratus_M_contig135.2604.1 vs. uniprot
Match: A0A8K1CG44_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG44_PYTOL)

HSP 1 Score: 167 bits (422), Expect = 2.130e-44
Identity = 90/241 (37.34%), Postives = 143/241 (59.34%), Query Frame = 3 
Query:  102 QQVLAAWTAKGDGEDIMVKAFNDTIYKKSMITLRDGLWLGDEVVNMYMRMLMQRNREAIASGRLVPKCGIMTSFFFTAISDSGKGYRYAGVKNFTRKAKIDLFGLDRFIFPVNVNKTHWTVGVIDFRRQRLEHYDSLSGRGFEDLHGFEYMVRFVDDESKAKRGSGMDISHWPRVN-VARRPMQRNGFDCGVFACMFADRLSKGIPLDFSQSDITHCREVMTLAILRGERSPSEEERCIED 821
            QQ++     +G  +D++++ +N  I ++ +  L    WL DEV+N + +MLM R+ E + SG L       +SFF+T +S+ G  Y +  V+ +TRK  IDLF +D+   PVNV+ THW + VI    +R++++DS++G G + L   E +++++ DE + K+    D   W  V  V   P Q NG+DCGVF C+FAD LS+ + L FSQ+D+   R  M L I++G  S  EEE  ++D
Sbjct:  221 QQIVHDALYEGLHQDVLIQKYNVDITRRHLQCLLPQQWLNDEVINFWFQMLMDRDAELVKSGVLEKPSHFFSSFFYTKVSEGG--YNFINVRRWTRK--IDLFSMDKIFVPVNVSNTHWCLAVIFMTEKRIQYFDSMAGPGTKCL---EVLLKYLHDEMQHKKQQPFDSEGWELVETVPGTPQQENGWDCGVFTCLFADYLSQNLDLSFSQNDMEFQRNRMILRIVQG--SVPEEEDDLDD 452
[Close]
BLAST of mRNA_F-serratus_M_contig135.2604.1 vs. uniprot
Match: A0A7S1ZTB6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZTB6_9STRA)

HSP 1 Score: 171 bits (433), Expect = 2.320e-44
Identity = 93/247 (37.65%), Postives = 134/247 (54.25%), Query Frame = 3 
Query:   66 TKERIPLTWQQQQQVLAAWTAKGDGEDIMVKAFNDTIYKKSMITLRDGLWLGDEVVNMYMRMLMQRNREAIASGRLVPKCGIMTSFFFTAISDSGKG-----YRYAGVKNFTRKAK-IDLFGLDRFIFPVNVNKTHWTVGVIDFRRQRLEHYDSLSGRGFEDLHGFEYMVRFVDDESKAKRGSGM-DISHWPRVNVAR-RPMQRNGFDCGVFACMFADRLSKGIPLDFSQSDITHCREVMTLAILRG 782
            TKE + +       V  A    G G +I+ +   DT+ + SM TLR G WL DEV++ ++ ML +R+ +  A+ +   +C    SFF T + D G       Y Y  VK ++++    DLF LD+  FPVN    HW   V+    +R++ YDSL G G   L G   + +++ DE KAK+G  + D   W  V      P Q+NG+DCGVF CM++D LSK  PL FSQ  IT CR+ + L+I+ G
Sbjct:  489 TKEEVSI-------VKNAMYGNGQGNEILARCDADTVQRDSMQTLRPGQWLNDEVIHYFLLMLSKRDEQMCAADKTRKRCHFFKSFFITKLFDEGNAATQGKYNYNNVKRWSKRVPGKDLFKLDKIFFPVNAGGVHWCCAVVFMAEKRIQFYDSLGGGGMTYLRG---LFQYLKDEHKAKKGCPLPDEDKWELVTCTEDTPFQQNGYDCGVFTCMYSDFLSKDCPLKFSQHHITQCRQRIALSIMNG 725
[Close]
BLAST of mRNA_F-serratus_M_contig135.2604.1 vs. uniprot
Match: A0A7S2SGX6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SGX6_9STRA)

HSP 1 Score: 161 bits (408), Expect = 7.900e-44
Identity = 90/241 (37.34%), Postives = 134/241 (55.60%), Query Frame = 3 
Query:   81 PLTWQQQQQVLAAWTAKGDGEDIMVKAFNDTIYKKSMITLRDGLWLGDEVVNMYMRMLMQRNREAIASGRLVPKCGIMTSFFFTAISDSG--KGYRYAGVKNFTRKAK-IDLFGLDRFIFPVNVNKTHWTVGVIDFRRQRLEHYDSLSGRGFEDLHGFEYMVRFVDDESKAKRGSGM--DISHWPRVNVARR--PMQRNGFDCGVFACMFADRLSKGIPLDFSQSDITHCREVMTLAILRG 782
            P T Q+   V  A    G  EDI+     D + + S+ TL+ G WL DEV++ + +M+   NR+A  +     +C    SFF T + D G    YRYA VK ++++    D+F LD+  FPVNV   HW   VI   ++R+  YDS+ G      +  + + +++ DE + K+G     +I  W  +   R   P QRNG+DCGV+ACMFAD +S+ +PL FSQ+ IT CR+ + L+IL G
Sbjct:   59 PFTDQENNLVKHAMYKIGSPEDILATDEGDQVSRLSLQTLQPGQWLNDEVIHYFYKMMA--NRDAKNNKNNNKRCHFFKSFFLTKLLDEGATNKYRYANVKRWSKRVPGKDIFNLDKIFFPVNVGNVHWACAVIFMTKKRIVFYDSMGGGAVAGKYVLQALKKYLQDEWQDKKGGPTMPNIQDWELIPNQRDKVPQQRNGYDCGVYACMFADFISRDVPLLFSQTHITECRKRIALSILTG 297
[Close]
BLAST of mRNA_F-serratus_M_contig135.2604.1 vs. uniprot
Match: A0A7S3Q661_9STRA (Hypothetical protein n=4 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q661_9STRA)

HSP 1 Score: 166 bits (421), Expect = 8.560e-44
Identity = 92/238 (38.66%), Postives = 135/238 (56.72%), Query Frame = 3 
Query:   84 LTWQQQQQVLAAWTAKGDGEDIMVKAFNDTIYKKSMITLRDGLWLGDEVVNMYMRMLMQRNREAIASGRLVPKCGIMTSFFFTAISDSG--KGYRYAGVKNFTRK-AKIDLFGLDRFIFPVNVNKTHWTVGVIDFRRQRLEHYDSLSGRGFEDLHGFEYMVRFVDDESKAKRGSGM-DISHWPRV-NVARRPMQRNGFDCGVFACMFADRLSKGIPLDFSQSDITHCREVMTLAILRG 782
            LT ++ + +  A    G G + +  +  D++ + SM TLR G WL DEV++ +  ML +R+    A+     +     SFFFT + D G    YRYA VK ++R+ A  D+F LD+  F  NVN  HWT  VI  + +R++++DS+ G G+    G   +++++ DE K K+G    D   W  + +    P QRNGFDCGVF CMFAD LS   PL F+Q  I  CRE + L+IL+G
Sbjct:  273 LTEEENELIHDAMYGSGPGMEKLALSDTDSVQRSSMQTLRTGTWLNDEVIHYFFLMLSKRDEALCATDSSRKRSHYFKSFFFTKLFDEGGTNEYRYANVKRWSRRVAGKDIFALDKIFFACNVNGMHWTCAVIFMQEKRIQYFDSMRGDGYMYSEG---LLKYIMDEWKTKKGGSFPDADKWKIIGSKGDVPTQRNGFDCGVFTCMFADFLSLDRPLSFTQEHIDQCRERIALSILKG 507
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig135.2604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUU7_9PHAE1.140e-10962.81ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
D7FMM6_ECTSI4.030e-10463.91Protease, Ulp1 family n=1 Tax=Ectocarpus siliculos... [more]
A0A7S2PD21_9STRA6.040e-5037.71Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2V080_9STRA9.490e-4738.36Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S1BEB7_9STRA2.400e-4639.66Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A0N7L7Z0_PLAHL1.850e-4438.81ULP_PROTEASE domain-containing protein n=1 Tax=Pla... [more]
A0A8K1CG44_PYTOL2.130e-4437.34Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1ZTB6_9STRA2.320e-4437.65Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2SGX6_9STRA7.900e-4437.34Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S3Q661_9STRA8.560e-4438.66Hypothetical protein n=4 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig135contigF-serratus_M_contig135:122923..128710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score323.2
Seed ortholog evalue1.1e-85
Seed eggNOG ortholog2880.D7FMM6
KEGG koko:K07277,ko:K08592
KEGG TC1.B.33
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005911,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009506,GO:0009909,GO:0009911,GO:0009987,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0030054,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048518,GO:0048580,GO:0048582,GO:0048831,GO:0050789,GO:0050793,GO:0051094,GO:0051239,GO:0051240,GO:0055044,GO:0065007,GO:0070011,GO:0070122,GO:0070137,GO:0070138,GO:0070139,GO:0070140,GO:0070646,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:2000026,GO:2000241,GO:2000243
EggNOG free text desc.protein modification by small protein removal
EggNOG OGsCOG5160@1,KOG0778@2759
EC3.4.22.68
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03029,ko04121
Exons10
Model size987
Cds size783
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig135.2604.1prot_F-serratus_M_contig135.2604.1Fucus serratus malepolypeptideF-serratus_M_contig135 122978..127657 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929333.1998541-UTR-F-serratus_M_contig135:122922..1229771622929333.1998541-UTR-F-serratus_M_contig135:122922..122977Fucus serratus maleUTRF-serratus_M_contig135 122923..122977 -
1690962802.6032727-UTR-F-serratus_M_contig135:122922..1229771690962802.6032727-UTR-F-serratus_M_contig135:122922..122977Fucus serratus maleUTRF-serratus_M_contig135 122923..122977 -
1622929333.33184-UTR-F-serratus_M_contig135:127657..1276991622929333.33184-UTR-F-serratus_M_contig135:127657..127699Fucus serratus maleUTRF-serratus_M_contig135 127658..127699 -
1690962802.692368-UTR-F-serratus_M_contig135:127657..1276991690962802.692368-UTR-F-serratus_M_contig135:127657..127699Fucus serratus maleUTRF-serratus_M_contig135 127658..127699 -
1622929333.3449216-UTR-F-serratus_M_contig135:128295..1283301622929333.3449216-UTR-F-serratus_M_contig135:128295..128330Fucus serratus maleUTRF-serratus_M_contig135 128296..128330 -
1690962802.7051585-UTR-F-serratus_M_contig135:128295..1283301690962802.7051585-UTR-F-serratus_M_contig135:128295..128330Fucus serratus maleUTRF-serratus_M_contig135 128296..128330 -
1622929333.359743-UTR-F-serratus_M_contig135:128638..1287101622929333.359743-UTR-F-serratus_M_contig135:128638..128710Fucus serratus maleUTRF-serratus_M_contig135 128639..128710 -
1690962802.7157018-UTR-F-serratus_M_contig135:128638..1287101690962802.7157018-UTR-F-serratus_M_contig135:128638..128710Fucus serratus maleUTRF-serratus_M_contig135 128639..128710 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929333.2150288-CDS-F-serratus_M_contig135:122977..1231781622929333.2150288-CDS-F-serratus_M_contig135:122977..123178Fucus serratus maleCDSF-serratus_M_contig135 122978..123178 -
1690962802.613223-CDS-F-serratus_M_contig135:122977..1231781690962802.613223-CDS-F-serratus_M_contig135:122977..123178Fucus serratus maleCDSF-serratus_M_contig135 122978..123178 -
1622929333.2288167-CDS-F-serratus_M_contig135:123647..1237091622929333.2288167-CDS-F-serratus_M_contig135:123647..123709Fucus serratus maleCDSF-serratus_M_contig135 123648..123709 -
1690962802.620661-CDS-F-serratus_M_contig135:123647..1237091690962802.620661-CDS-F-serratus_M_contig135:123647..123709Fucus serratus maleCDSF-serratus_M_contig135 123648..123709 -
1622929333.2458692-CDS-F-serratus_M_contig135:124166..1242871622929333.2458692-CDS-F-serratus_M_contig135:124166..124287Fucus serratus maleCDSF-serratus_M_contig135 124167..124287 -
1690962802.6286006-CDS-F-serratus_M_contig135:124166..1242871690962802.6286006-CDS-F-serratus_M_contig135:124166..124287Fucus serratus maleCDSF-serratus_M_contig135 124167..124287 -
1622929333.2624831-CDS-F-serratus_M_contig135:124665..1247641622929333.2624831-CDS-F-serratus_M_contig135:124665..124764Fucus serratus maleCDSF-serratus_M_contig135 124666..124764 -
1690962802.6371164-CDS-F-serratus_M_contig135:124665..1247641690962802.6371164-CDS-F-serratus_M_contig135:124665..124764Fucus serratus maleCDSF-serratus_M_contig135 124666..124764 -
1622929333.2798002-CDS-F-serratus_M_contig135:125050..1251011622929333.2798002-CDS-F-serratus_M_contig135:125050..125101Fucus serratus maleCDSF-serratus_M_contig135 125051..125101 -
1690962802.6466854-CDS-F-serratus_M_contig135:125050..1251011690962802.6466854-CDS-F-serratus_M_contig135:125050..125101Fucus serratus maleCDSF-serratus_M_contig135 125051..125101 -
1622929333.2947338-CDS-F-serratus_M_contig135:126407..1265041622929333.2947338-CDS-F-serratus_M_contig135:126407..126504Fucus serratus maleCDSF-serratus_M_contig135 126408..126504 -
1690962802.656551-CDS-F-serratus_M_contig135:126407..1265041690962802.656551-CDS-F-serratus_M_contig135:126407..126504Fucus serratus maleCDSF-serratus_M_contig135 126408..126504 -
1622929333.3090692-CDS-F-serratus_M_contig135:126987..1270611622929333.3090692-CDS-F-serratus_M_contig135:126987..127061Fucus serratus maleCDSF-serratus_M_contig135 126988..127061 -
1690962802.6670074-CDS-F-serratus_M_contig135:126987..1270611690962802.6670074-CDS-F-serratus_M_contig135:126987..127061Fucus serratus maleCDSF-serratus_M_contig135 126988..127061 -
1622929333.3212833-CDS-F-serratus_M_contig135:127579..1276571622929333.3212833-CDS-F-serratus_M_contig135:127579..127657Fucus serratus maleCDSF-serratus_M_contig135 127580..127657 -
1690962802.676763-CDS-F-serratus_M_contig135:127579..1276571690962802.676763-CDS-F-serratus_M_contig135:127579..127657Fucus serratus maleCDSF-serratus_M_contig135 127580..127657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig135.2604.1

>prot_F-serratus_M_contig135.2604.1 ID=prot_F-serratus_M_contig135.2604.1|Name=mRNA_F-serratus_M_contig135.2604.1|organism=Fucus serratus male|type=polypeptide|length=261bp
MVKAFNDTIYKKSMITLRDGLWLGDEVVNMYMRMLMQRNREAIASGRLVP
KCGIMTSFFFTAISDSGKGYRYAGVKNFTRKAKIDLFGLDRFIFPVNVNK
THWTVGVIDFRRQRLEHYDSLSGRGFEDLHGFEYMVRFVDDESKAKRGSG
MDISHWPRVNVARRPMQRNGFDCGVFACMFADRLSKGIPLDFSQSDITHC
REVMTLAILRGERSPSEEERCIEDWGSPREGFAWWSGDDDDYEPRYGGGQ
LRPEPWANGF*
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mRNA from alignment at F-serratus_M_contig135:122923..128710-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig135.2604.1 ID=mRNA_F-serratus_M_contig135.2604.1|Name=mRNA_F-serratus_M_contig135.2604.1|organism=Fucus serratus male|type=mRNA|length=5788bp|location=Sequence derived from alignment at F-serratus_M_contig135:122923..128710- (Fucus serratus male)
CAAGGGCAAAATCGAAGGAAGCTGAGGCAGCGGCAGCTTTGGTGAAGAAT
CAAGCGAAATCAGGCACGAAAGGTATGCTCACTCCGGCGCAGCAAGTTCA
TGTTTTCACTCCGGCACCTTGAACGATCGAGAAACCGTCGCACGAAGTCT
GCCCCGAGCTTGCCAGGCGCCGATCGTTTATGGTCGTGTGTTCGGCCGTG
CGTGCGTTAGTGCATTAGTCCAGTCCCTCTGTACCTCCATGATGACCATT
TTGTCTGACCGTGGCGTTCAACGAAACACCGCCTTTCCCTCCTTGTGCGG
GTGCGCTCGGTTCGCCGTAACGATGGATACTGGGTCCGGTTCGGTTCTGG
TGCTGTTTGGGGTGCGGCGACTGCAAACAGAGCGTATCCCTTTGACGTGG
CAACAGCAACAGCAGGTAAGACCGACGGACAGTCATCGATATCAATTAGC
CCCGAGCCTGGGGGGGGTGGGGGTGGCAGGGGCGGAAGTCATGCTATCCT
TTCCTATCTCAGCTTCGTCCGTGAGCTCATGTTGTGTAGAACATCGAGAG
CTGGAGCAGCAACTATGCCAAGCGGTGTGATGTGTAGATGGTCGGAGGGT
CTTCTGTACAGTATACAGTATCGATCGTTTCGATAGGGCTGTAGGACACA
CTCTCGACGGCAGACGGTTACACGACCAGTGGGGGAACCACCTGCAATCT
GACTGGTTCGACCGTCCACACTATTTTACGTGGCCGACGTTTCGCCTGGG
AATTCCACTCGTCATGGGAGACGGCATGGCTTCTAGCGGATCTCAAGGCG
ATGTTTCTGGTTAAAGGTTTTTAGGCAACACTTTGCGTAGCATTCTGTTC
GACGCCGGAAACCTTTCAGTAACCATATCTGGCTTGCCTGTTTTAAAAAG
ATGAACCCAAATCCAACACATGGTAGTGCACCAGAAGATTGTGAGCGCTT
CTCAGGAGTAAATGCTACTTTACGTTCATGTCGTGCGTTTTTCTGTTGCT
TTTGAGAGAAGGTGCTTGCGGCCTGGACGGCCAAAGGAGACGGTGAAGAT
ATTATGGTGAAAGCTTTCAACGACACGATCTACAAGAAATCAATGATAAC
TCTGCGAGACGGCCTGTGGCTCGGAGACGAGGTAGACTTACCGGGGGGGG
GGCTATCAGAGCTCTCCCCTCTCTTGCGCTCCTCAAATACTCTTGTATTA
GTGTACACAGCCAAGACTTGTTTCAAGCGGAGTCATCGGTGTCCGTGATT
TCGTTATCGTGTAGAGGCTATTTTATCGCGTGTGCACCGATGATTTTGGA
CCAAAACAATATAGAGTACCTGGTAGGTATCGTATCGCCCGCTGGTCACT
TAGCTCCAGAGGCTTCGTAGAGCCTAAGCACATTTTCTCGACTTTCAAGC
ACGAAATGCAAATCCCGTCGCACTCGCCTTTCCAACAACGAAAGGGAACC
GTATCCGTTCCGCCGCAGCTGTATAACGAGAGGTATATTATACTATGTAG
GCGTATTGCCGTGCATTTCTACCTGTAGAGGTGTCTGTAGAGTTGCCCGT
AGAGTTAGCTGTATAATGGGAGGTGGCGGAAGGCGAAGACCTCGATGATC
GGTTTGCGTTGTGTGTTTGTTCGTGCGCCTCTCGGCTTGTCCGCCTCAGG
TGGTAAATATGTATATGCGGATGCTTATGCAGAGAAATAGGGAGGCCATC
GCTTCCGGGCGACTGGTCCCAAAGTAAGTACCAAGTACTTGAAATCACGC
TGGTACCTGCGGCGGTACCTGTTGTACTGTGGGTGCCGGCGATGTTGGTG
TCGAGATGTTAATGTTATGGTCGTCTATGGTACAAGTATTGATAATGCCG
ATCGATGTTCGACATGTGGTTCAGCTAATTTATACTCGAGTATCACTTAT
TCATACCGGGTACTGGGTGTTGAGGGTGATAGTATGCCTGTGTTGGAGGA
CTGTCAAGAAAAATATAGAAAACTTCAATTATTGCGGGGCGCCCGTGTCA
GATTCCCGTCGAGCAGACAGGAGTTAAGTTGTCGCGGCGATAATTCTCCC
ACATCACCGTCCTGACCAGTCTCATCTCATCTCATCGACGTTGTCGAGAT
CGTGCTGTATTTCGTGACTCCGACAGTACTCTCAAAGCACATCTAAGGTA
CACAGTACATAACGAACTTTTGATAACTGCACGTACGCTACGCTACGTTA
TCGCAGATGCGGAATCATGACCAGTTTCTTCTTCACTGCGATCTCCGATT
CCGGAAAGGGCTATAGGTACGCTGGAGTCAAGAACTTTACGAGGAAGGCC
AAGGTGATTCCCTAGCGGGGGGGGTAGTTGAGATTTATTCCCGAGCGCGT
TGACGCTGCTCTGGCTGTATGACTAGTAACTAAATAAATGTATCATGTGT
CTACTAATGGAGCTATCATACGGACGCTGTTCGGTGACAGCAGTTGGGCC
AACTGCATGACCGCCATTTTTAATTTTATTTTATGCCTTCTCGGGGGTGA
GGAGTTATTAATAGTTATAAATAGTCCACCCCGACGCTGTTGTCTGACAC
GCTCCTTGGCGCCCAAACACCGTTGCTCCATTCGCATCAGCGTCCGAAGC
ATGAGCACGTTGATGTCTTCTTGAGCCATAGTCTCCTTCCTCACACGGTC
ATAGTCTACCCTTGTGCAGCACACAGTCAGCCCAATAGTCGACCAACAGA
CTCAGCGAGATCGTAATAGGAGCTGTCTGGGCCACGTAGCCCGATGTGGT
CACTTCGAAAAGCTTCCAAAAGTTTCCCCTTTGTCTCGCCCTTTCCTCAC
CTTCCTTCTCTTTCCAAATTTTGGCGGTCAAGTTCTGACGATGCAAAGCT
CTCTCTTAGAAACTTTCCTATATCCCCCAAGACATGTCAGGCCATCCTTT
CACCTCTGGGGAGGCCGTGTCGACCCAGCACTTGTATACTGTCTTATTGT
TAAATTGAATCAAATCAATGATACTAGCATTTTAAGAGTAACGGTACATC
TCCTGGCCGCCGCCGCCGAACAGTGTTACGCCAGCATTTATGTTGCTGTT
TATCTCACATGAACTGATCCGCTACGAATTCAGCCGTGGTCACAAGGTAG
ACGGAATCAAACCAAACCAAACAAACGAAATAAAACAAAATGGGCTTCAG
AATAGACACCATACACCGCTGTCGTCCGTAGTTTGGAAGGCGTTTGGGAG
GCATGAAACAGACGTCTCCGGGCGCTGCGCCCTATCAATCAATACCAGGT
ACCTGGTATGAATAGTGCTATTTTTCCACCGAGGCGCTGGCGGCTCTATG
CTAATAATATTAAATATGATTGCCACTATATTCACCTCCTTAACAACAAG
TCAAATTCAAGGCCGTGTTCTTCCCTCGAAACATTTGATTGTTCCACCCC
CTATAGGGAGGGAGTATGATATATAGGGAACATAGAGCATATAACATCGC
GTATTAGTATTAGTAATAGTATCACTAGAGCCTATGCATCCAAAGGCAGG
GAAGGGTACGCTGACTCGTCCAAAAAATGCCTCCTTGTACTAACTACAAA
CTTGAACCGATTTTAACTCATGAACGCGTACGTACGTCATGCGCAATGGG
CTGGAGCAGATCGATCTCTTCGGCCTGGACAGGTTCATATTTCCAGTAAA
CGTCAACAAGGTGCGTAGATGTGTATCGCACGGATCCATAGGTCTATTTA
TCTAGCCCTTCGCTTTTCCATCCGCCGTTGCCTCGTCTGGCATACTTTGC
TTGGACCCTCCCCAGTCTTTTTCTGTCCCATTTTCTTCTTGCTTTTTTCA
TTTTCTGGTGCTGCTTGCTGCTTCTATTTGTCGGGGGCGACGAACTCGAC
CCGAGCTTAAGAGGGACTCTCAAGTATACAATGCACAGACAGACAGACGT
ATGTACACGAAGAAGTTAACGGCGGCGATGTTTTCTCAATTTGCAGACTC
ACTGGACGGTGGGTGTCATCGACTTCCGCCGCCAGCGGCTGGAACACTAC
GACTCCCTTTCCGGCCGAGGGTTCGAAGACCTCCATGGGTTTGAGGTGAG
GTCTGAGGTCGCTACAAACTCCGCCGTAGCAAATAGCGAGCGCTGTCATT
TGGTATCTCGAAGTCATGAAGACCACCTCTGGCGAACACAGCAGTAGCTA
GCTATTATTACAAAAGACTAGGAATACAGCGATCGACACTCCCAGACATG
ACGAGAGCCTGCGATCGGCACTCGAGGAAGAAACGTGTGTGAACATTTCC
CGTGGTGCACATGGAGGGGGGTTGCCGAGAAACAGGTTGATTGGACAATG
TCCACGCGCAGTTCGACGGCCACCAACTGCCGGTGGTTGCTCAACTGCTG
TACTCATGATAACTTCTATTATCTTATCTCATTATTTTTTCCCCTTATCA
CTCGTTGTTGGCGCGACCCACAGTACATGGTCAGATTCGTCGACGACGAG
TCGAAGGCGAAGCGGGGGTCGGGAATGGACATTTCCCACTGGCCTCGGGT
TAACGTCGCACGGAGGCCAATGCAGCGGAACGGCTTCGACTGCGGTAGGT
TTTGCGGCCCGTAGGCGTTGTTACCACCTTTCGCCGTCGCCGCCGACTAC
GTTTTCAAATTTCAATACAGTACATAACCCTACCTGTCTGCGGTATGACT
CGCGCCTTAACGGCGCATACGCACCGCGCGATCTTTCCTCGACGTAAAAT
GAGGCGGATCCAGGCGGGAGTTCCATGGCCTCCCCCCCGCCCCCCGCCCC
CCCCCGTCCTGTCCCATCCCCCTCAAGTCTCGATGAAACCTGAATCCACC
GTGAGCAGCAGGTGGCACTAATATTATAGTACGAACGTTGGCGGACATTA
CTAGCTACTTGAAGCGTGGTGATGGTTGTAGCATGTGCCGCAACGTGTTT
TCTTGCCAGTAACTGCGAGGTCACTAAGCTGCGATATTCCTCCCTCTCTC
TCTCTGCCCACGTGCGCTCCTGGAATTGCGATCCTTGTGCACGCGTCGCA
GGCGTGTTCGCCTGTATGTTCGCCGATCGCCTCAGCAAGGGGATACCGCT
CGACTTTTCTCAGGCGAGGGGATACGGCTTTCTCTGTTGTTGAGCTTGAT
TGTCCTTTGCCTTGTCCTCTGGGAATATCTGTCCGATCGTTCTCTTATAG
AAATACTCAAGGATAAAAAACGTGAAATCCCCTTATTTTTCTTAATATCT
TGTGGTGCATCGATCAGCCCTCTCGTGACTCTGTTCGAGCGCTTCCTGCC
TTGTCGCTGCGCGAATATGGAAACCTACGATTTGCCATTTCCAACCGCCG
ACTCCTTGAGACGGGCTCATGACTCATGGACCCGGATGTGTCCCGTGATG
GATCCGTTCCTTTACTCGGCGACTTCGTGATCGATCGCTCGAGATACTCT
TATTTACTCTCCCGCAATGCTACTGTACGGTACACCACCTATCTAACCCA
TCTAACTTACCCTGGACTTCTTGCCCCCTGCCACGATCACGTTGACTCCA
ATAACAATACAATACAATCACAAAATGAAAAGAGCGACATCACCCACTGC
CGTGAGGTGATGACGCTAGCAATACTCCGTGGCGAGAGGTCTCCCTCGGA
AGAGGAGAGATGTATCGAAGACTGGGGAAGCCCGCGAGAAGGGTTTGCGT
GGTGGTCTGGGGACGATGACGATTACGAGCCACGGTATGGCGGCGGGCAG
CTGAGGCCGGAGCCTTGGGCAAATGGCTTCTAGCAACTTGGTGTGGTGCG
CTATTTTCCCATCACCGAGTGCGTTGGATATGTGAACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig135:122923..128710-

>mRNA_F-serratus_M_contig135.2604.1 ID=mRNA_F-serratus_M_contig135.2604.1|Name=mRNA_F-serratus_M_contig135.2604.1|organism=Fucus serratus male|type=CDS|length=1566bp|location=Sequence derived from alignment at F-serratus_M_contig135:122923..128710- (Fucus serratus male)
ATGGTGAAAGCTTTCAACGACACGATCTACAAGAAATCAATGATAACTCT
GCGAGACGGCCTGTGGCTCGGAGACGAGATGGTGAAAGCTTTCAACGACA
CGATCTACAAGAAATCAATGATAACTCTGCGAGACGGCCTGTGGCTCGGA
GACGAGGTGGTAAATATGTATATGCGGATGCTTATGCAGAGAAATAGGGA
GGCCATCGCTTCCGGGCGACTGGTCCCAAAGTGGTAAATATGTATATGCG
GATGCTTATGCAGAGAAATAGGGAGGCCATCGCTTCCGGGCGACTGGTCC
CAAAATGCGGAATCATGACCAGTTTCTTCTTCACTGCGATCTCCGATTCC
GGAAAGGGCTATAGGTACGCTGGAGTCAAGAACTTTACGAGGAAGGCCAA
GATGCGGAATCATGACCAGTTTCTTCTTCACTGCGATCTCCGATTCCGGA
AAGGGCTATAGGTACGCTGGAGTCAAGAACTTTACGAGGAAGGCCAAGAT
CGATCTCTTCGGCCTGGACAGGTTCATATTTCCAGTAAACGTCAACAAGA
TCGATCTCTTCGGCCTGGACAGGTTCATATTTCCAGTAAACGTCAACAAG
ACTCACTGGACGGTGGGTGTCATCGACTTCCGCCGCCAGCGGCTGGAACA
CTACGACTCCCTTTCCGGCCGAGGGTTCGAAGACCTCCATGGGTTTGAGA
CTCACTGGACGGTGGGTGTCATCGACTTCCGCCGCCAGCGGCTGGAACAC
TACGACTCCCTTTCCGGCCGAGGGTTCGAAGACCTCCATGGGTTTGAGTA
CATGGTCAGATTCGTCGACGACGAGTCGAAGGCGAAGCGGGGGTCGGGAA
TGGACATTTCCCACTGGCCTCGGGTTAACGTCGCACGGAGGCCAATGCAG
CGGAACGGCTTCGACTGCGTACATGGTCAGATTCGTCGACGACGAGTCGA
AGGCGAAGCGGGGGTCGGGAATGGACATTTCCCACTGGCCTCGGGTTAAC
GTCGCACGGAGGCCAATGCAGCGGAACGGCTTCGACTGCGGCGTGTTCGC
CTGTATGTTCGCCGATCGCCTCAGCAAGGGGATACCGCTCGACTTTTCTC
AGGCGTGTTCGCCTGTATGTTCGCCGATCGCCTCAGCAAGGGGATACCGC
TCGACTTTTCTCAGAGCGACATCACCCACTGCCGTGAGGTGATGACGCTA
GCAATACTCCGTGGCGAGAGGTCTCCCTCGGAAGAGGAGAGATGTATCGA
AGACTGGGGAAGCCCGCGAGAAGGGTTTGCGTGGTGGTCTGGGGACGATG
ACGATTACGAGCCACGGTATGGCGGCGGGCAGCTGAGGCCGGAGCCTTGG
GCAAATGGCTTCTAGAGCGACATCACCCACTGCCGTGAGGTGATGACGCT
AGCAATACTCCGTGGCGAGAGGTCTCCCTCGGAAGAGGAGAGATGTATCG
AAGACTGGGGAAGCCCGCGAGAAGGGTTTGCGTGGTGGTCTGGGGACGAT
GACGATTACGAGCCACGGTATGGCGGCGGGCAGCTGAGGCCGGAGCCTTG
GGCAAATGGCTTCTAG
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