mRNA_F-serratus_M_contig1348.2580.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1348.2580.1
Unique NamemRNA_F-serratus_M_contig1348.2580.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1348.2580.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.080e-29
Identity = 59/116 (50.86%), Postives = 82/116 (70.69%), Query Frame = 1 
Query:   40 GELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWLS-----DIANAVRTVVRQAHDPAERH*RALRKIIAYLNKTK 372
            GE  W+ GCA ERD + G LR SQ A+I+S+V+R+ V + S++PAS   D+GP+RDDE   + PVR  +GS++W+S     DI+ AVR V R AH PAERH +A+ KI+AYL +T+
Sbjct:  226 GECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETR 341
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BLAST of mRNA_F-serratus_M_contig1348.2580.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 8.620e-26
Identity = 58/117 (49.57%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:   40 GELSWYLGCAFERDRKGGV-LRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWLS-----DIANAVRTVVRQAHDPAERH*RALRKIIAYLNKTK 372
            GE  W+ GCA ERD + G+ LR SQ A+I+ +V+R+ V + S++PAS   D+GP+RDDE   + PVR  +GS++W+S     DI+ AVR V R AH PAERH +A+ KI+AYL +T+
Sbjct: 1615 GECVWFDGCAVERDLEAGMTLRISQTAYID-IVNRFDVQSTSSIPASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETR 1730
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BLAST of mRNA_F-serratus_M_contig1348.2580.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.180e-25
Identity = 54/115 (46.96%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:   40 GELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWLS-----DIANAVRTVVRQAHDPAERH*RALRKIIAYLNKT 369
            GE +WY GCA ERD + G    SQ+A+I  ++ R+G+   ++ PA  +ADLGP+RDDEP  DKPVR  +G L+W +     DIA A+  V R AH P  R  +AL +I++YLN T
Sbjct: 1515 GECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNADLGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNAT 1629
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BLAST of mRNA_F-serratus_M_contig1348.2580.1 vs. uniprot
Match: A0A6H5KB85_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB85_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 6.890e-25
Identity = 59/150 (39.33%), Postives = 83/150 (55.33%), Query Frame = 1 
Query:    1 MIVCLLDEFQTTG-GELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWLS-------------------------DIANAVRTVVRQAHDPAERH*RALRKIIAYLNKTK 372
            ++  L  +F T   GE  W+ GCA ERD   G LR SQ A+I+S+V R+ V + S +PA+   DLGP+R+DE     PVRA +GS++W+S                         D++ AVR V R AH PA+RH  A++KI+ YL  T+
Sbjct:   29 LLASLNKKFPTKNLGECQWFDGCAIERDADAGTLRISQTAYIDSMVERFDVQSTSRIPATHGTDLGPKREDEEGGGWPVRAAIGSMMWVSTXXXXXXXXXXXXXXXMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTR 178
[Close]
BLAST of mRNA_F-serratus_M_contig1348.2580.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 7.430e-25
Identity = 53/115 (46.09%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:   40 GELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWLS-----DIANAVRTVVRQAHDPAERH*RALRKIIAYLNKT 369
            GE +WY GCA ERD + G    SQ+A+I  ++ R+G+   ++ PA  +A+LGP+RDDEP  DKPVR  +G L+W +     DIA A+  V R AH P  R  +AL +I++YLN T
Sbjct:  962 GECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNAT 1076
[Close]
BLAST of mRNA_F-serratus_M_contig1348.2580.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 5.750e-24
Identity = 52/115 (45.22%), Postives = 73/115 (63.48%), Query Frame = 1 
Query:   40 GELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWLS----DIANAVRTVVRQAHDPAERH*RALRKIIAYLNKTK 372
            GE +WY GCA   D + G+ + SQ A+IES++ R+ V  ++ +PA+  ADLGP+RDDEP  DKPVR  +G L+W      DIA  +  + + AH P  R   AL +I++YLN TK
Sbjct:  159 GECTWYDGCAIVMDVENGITKLSQTAYIESMLKRFDVTTIAFIPAATDADLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTK 273
[Close]
BLAST of mRNA_F-serratus_M_contig1348.2580.1 vs. uniprot
Match: A0A6H5K8K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K4_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 8.930e-24
Identity = 50/115 (43.48%), Postives = 73/115 (63.48%), Query Frame = 1 
Query:   40 GELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWL----SDIANAVRTVVRQAHDPAERH*RALRKIIAYLNKTK 372
            GE +WY G   E D + G+ + SQ A+IES++ R+ V   +  PA   ADLGP+RDDEP  DKPVR  +G L+W+     DIA  +  +++ AH P +R  +AL ++++YLN TK
Sbjct: 1025 GECTWYDGIGIEMDLENGITKLSQTAYIESIIKRFNVTTTAPTPAVPGADLGPKRDDEPTVDKPVREALGCLMWVVHKRPDIALPLSKILKVAHSPTDRIWQALLRVMSYLNATK 1139
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BLAST of mRNA_F-serratus_M_contig1348.2580.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.140e-23
Identity = 53/115 (46.09%), Postives = 73/115 (63.48%), Query Frame = 1 
Query:   40 GELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWL----SDIANAVRTVVRQAHDPAERH*RALRKIIAYLNKTK 372
            G+ +WY GCA E D + G  + SQ A+IES+++R+ V   +  PA    DLGP+RDDE   DKPVR T+G L+WL     DIA  +  + + AH P ER   AL +I++YLN+TK
Sbjct:  130 GDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNRFNVTTTAPTPAVVDDDLGPKRDDESSVDKPVRETIGCLMWLLFMRPDIALPLNKLQKIAHSPTERMWNALVRIMSYLNETK 244
[Close]
BLAST of mRNA_F-serratus_M_contig1348.2580.1 vs. uniprot
Match: A0A6H5KW89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW89_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.620e-23
Identity = 51/115 (44.35%), Postives = 71/115 (61.74%), Query Frame = 1 
Query:   40 GELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWLS----DIANAVRTVVRQAHDPAERH*RALRKIIAYLNKTK 372
            GE +WY GCA   D + G+ + SQ A+I+S++ R+ V   +  PA+  ADLGP+RDDEP  DKPVR  +G L+W      DIA  +  + + AH P  R   AL +I++YLN TK
Sbjct:   90 GECTWYDGCAIAMDVENGITKLSQTAYIDSMLQRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLNKLQKIAHSPTGRIWNALVRIMSYLNFTK 204
[Close]
BLAST of mRNA_F-serratus_M_contig1348.2580.1 vs. uniprot
Match: A0A6H5JE75_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE75_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.650e-23
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 1 
Query:   40 GELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGVDAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWLS----DIANAVRTVVRQAHDPAERH*RALRKIIAYLNKTK 372
            GE +WY GCA   D + G+ + SQ A+IES++ R+ V   +  PA+  ADLGP+RDDEP  DKPVR  +G L+W      DIA  +  + + AH P  R   AL +I++YLN TK
Sbjct:   90 GECTWYDGCAIAMDVENGITKLSQTAYIESMLKRFDVTTTAFTPAATDADLGPKRDDEPAVDKPVREAIGCLMWTKLTRPDIALPLSKLQKIAHLPTGRKWNALVRIMSYLNFTK 204
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1348.2580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG0_9PHAE1.080e-2950.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LGF7_9PHAE8.620e-2649.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE2.180e-2546.96Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB85_9PHAE6.890e-2539.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKS3_9PHAE7.430e-2546.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXU1_9PHAE5.750e-2445.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K8K4_9PHAE8.930e-2443.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCN6_9PHAE1.140e-2346.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KW89_9PHAE1.620e-2344.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JE75_9PHAE1.650e-2345.22Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1348contigF-serratus_M_contig1348:2144..2532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size374
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1348.2580.1prot_F-serratus_M_contig1348.2580.1Fucus serratus malepolypeptideF-serratus_M_contig1348 2188..2532 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929325.5086877-UTR-F-serratus_M_contig1348:2143..21871622929325.5086877-UTR-F-serratus_M_contig1348:2143..2187Fucus serratus maleUTRF-serratus_M_contig1348 2144..2187 -
1690962799.8927069-UTR-F-serratus_M_contig1348:2143..21871690962799.8927069-UTR-F-serratus_M_contig1348:2143..2187Fucus serratus maleUTRF-serratus_M_contig1348 2144..2187 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929325.5214467-CDS-F-serratus_M_contig1348:2187..22491622929325.5214467-CDS-F-serratus_M_contig1348:2187..2249Fucus serratus maleCDSF-serratus_M_contig1348 2188..2249 -
1690962799.9036052-CDS-F-serratus_M_contig1348:2187..22491690962799.9036052-CDS-F-serratus_M_contig1348:2187..2249Fucus serratus maleCDSF-serratus_M_contig1348 2188..2249 -
1622929325.5345378-CDS-F-serratus_M_contig1348:2264..25321622929325.5345378-CDS-F-serratus_M_contig1348:2264..2532Fucus serratus maleCDSF-serratus_M_contig1348 2265..2532 -
1690962799.913726-CDS-F-serratus_M_contig1348:2264..25321690962799.913726-CDS-F-serratus_M_contig1348:2264..2532Fucus serratus maleCDSF-serratus_M_contig1348 2265..2532 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1348.2580.1

>prot_F-serratus_M_contig1348.2580.1 ID=prot_F-serratus_M_contig1348.2580.1|Name=mRNA_F-serratus_M_contig1348.2580.1|organism=Fucus serratus male|type=polypeptide|length=110bp
MIVCLLDEFQTTGGELSWYLGCAFERDRKGGVLRTSQRAFIESVVSRYGV
DAVSNLPASQSADLGPRRDDEPVYDKPVRATVGSLIWLSDIANAVRTVVR
QAHDPAERH*
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mRNA from alignment at F-serratus_M_contig1348:2144..2532-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1348.2580.1 ID=mRNA_F-serratus_M_contig1348.2580.1|Name=mRNA_F-serratus_M_contig1348.2580.1|organism=Fucus serratus male|type=mRNA|length=389bp|location=Sequence derived from alignment at F-serratus_M_contig1348:2144..2532- (Fucus serratus male)
ATGATTGTTTGTCTTCTTGACGAGTTCCAGACTACGGGAGGGGAACTCTC
GTGGTACCTAGGGTGCGCGTTTGAGCGTGATAGGAAAGGAGGCGTTCTTC
GCACATCGCAGAGAGCGTTTATCGAGTCTGTTGTCAGCCGCTATGGAGTT
GACGCAGTGTCTAATCTCCCGGCTTCTCAATCGGCAGATCTCGGCCCTAG
GAGGGACGACGAGCCGGTCTATGATAAACCGGTTCGGGCGACTGTTGGTA
GTTTGATTTGGTTGAGTGGTATGACGCGGCCAGACATAGCCAATGCGGTT
AGGACAGTAGTACGTCAAGCCCACGATCCTGCTGAAAGGCACTGACGAGC
CCTTAGGAAAATAATCGCGTACCTGAATAAAACGAAAGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1348:2144..2532-

>mRNA_F-serratus_M_contig1348.2580.1 ID=mRNA_F-serratus_M_contig1348.2580.1|Name=mRNA_F-serratus_M_contig1348.2580.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig1348:2144..2532- (Fucus serratus male)
ATGATTGTTTGTCTTCTTGACGAGTTCCAGACTACGGGAGGGGAACTCTC
GTGGTACCTAGGGTGCGCGTTTGAGCGTGATAGGAAAGGAGGCGTTCTTC
GCACATCGCAGAGAGCGTTTATCGAGTCTGTTGTCAGCCGCTATGGAGTT
GACGCAGTGTCTAATCTCCCGGCTTCTCAATCGGCAGATCTCGGCCCTAG
GAGGGACGACGAGCCGGTCTATGATAAACCGGTTCGGGCGACTGTTGGTA
GTTTGATTTGGTTGAGTGATGATTGTTTGTCTTCTTGACGAGTTCCAGAC
TACGGGAGGGGAACTCTCGTGGTACCTAGGGTGCGCGTTTGAGCGTGATA
GGAAAGGAGGCGTTCTTCGCACATCGCAGAGAGCGTTTATCGAGTCTGTT
GTCAGCCGCTATGGAGTTGACGCAGTGTCTAATCTCCCGGCTTCTCAATC
GGCAGATCTCGGCCCTAGGAGGGACGACGAGCCGGTCTATGATAAACCGG
TTCGGGCGACTGTTGGTAGTTTGATTTGGTTGAGTGACATAGCCAATGCG
GTTAGGACAGTAGTACGTCAAGCCCACGATCCTGCTGAAAGGCACTGAAC
ATAGCCAATGCGGTTAGGACAGTAGTACGTCAAGCCCACGATCCTGCTGA
AAGGCACTGA
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