mRNA_F-serratus_M_contig1347.2577.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1347.2577.1 vs. uniprot
Match: D7G122_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G122_ECTSI) HSP 1 Score: 134 bits (338), Expect = 3.920e-34 Identity = 77/145 (53.10%), Postives = 98/145 (67.59%), Query Frame = 1
Query: 4 LVDAGTITKVTETVNAYDTTASD-SGCEPDGCEAANTRDGDLS--TRWSCKEDFLDGTNCEITYTFEEPQDIVRILIAFYKGDERSRELKVKINGFGRYLINSSGETTELESFEINADETETLTLEGLGLRGEEWISITEVQLMV 429
LVDA T V + NAYD S+ GC+PDGC+A+ TRD +RWSC E L+ C+ITY FEEPQDIVRI I FYKGDER R LK+K + I SSG +++ E+++IN DET+ L++E L L +EWISITEV+ MV
Sbjct: 4 LVDARKRTTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEK-LEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFEKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRFMV 147
BLAST of mRNA_F-serratus_M_contig1347.2577.1 vs. uniprot
Match: D7G277_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G277_ECTSI) HSP 1 Score: 110 bits (276), Expect = 2.700e-22 Identity = 63/163 (38.65%), Postives = 94/163 (57.67%), Query Frame = 1
Query: 7 VDAGTITKVTETVNAYDTTASDSGCEPDGCEAANTRDGDLS--TRWSCKEDFLD------GTNCEITYTFEEPQDIVRILIAFYKGDERSRELKVKINGFGRYLINSSGETTELESFEIN----ADETETLTLEGLGLRGEEWISITEVQLMVME*TL*GPAA 459
V+AG +T VT T NA+D D GC PDGC NTRDGDL+ +RWSC ++ G C++ + E Q + + +AF KGD R+R L + +NG ++ S G T+ LE+FE++ A +L +E GL +E++SI EV++ V + T+ AA
Sbjct: 248 VEAGEVTTVTVTTNAFDARTDDDGCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQVMFELGEAQLVTSVSVAFLKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTADEFLSIIEVEIAVGDSTVASSAA 410
BLAST of mRNA_F-serratus_M_contig1347.2577.1 vs. uniprot
Match: A0A6H5J8U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8U9_9PHAE) HSP 1 Score: 107 bits (267), Expect = 8.540e-22 Identity = 66/152 (43.42%), Postives = 89/152 (58.55%), Query Frame = 1
Query: 7 VDAGTITKVTETVNAYDT----TASDSGCEPDGCEAANTRDG----DLSTRWSCKEDFL-DGTNCEITYTFEEPQDIVRILIAFYKGDERSRELKVKING--FGRYLINSSGETTELESFEINADETETLTLEGLGLRGEEWISITEVQLMV 429
V+AG+ T V T AYD +A D GC GC DG D +RWSC E+ + DG CEI++TF+ PQDI + +AF+KGDER+R LKVKING G Y S + SF I + T+T+E +G+ ++WIS+ EV+ MV
Sbjct: 252 VEAGSKTTVGVTATAYDDRPGESAGDVGCGEMGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEISFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEY---ESYPGSTFNSFGIQENGVHTVTMESVGIDRDDWISLLEVRFMV 400
BLAST of mRNA_F-serratus_M_contig1347.2577.1 vs. uniprot
Match: A0A6H5L4E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E8_9PHAE) HSP 1 Score: 109 bits (273), Expect = 9.910e-22 Identity = 67/143 (46.85%), Postives = 87/143 (60.84%), Query Frame = 1
Query: 4 LVDAGTITKVTETVNAYDTTASD-SGCEPDGCEAANTRDGDLS--TRWSCKEDFLDGTNCEITYTFEEPQDIVRILIAFYKGDERSRELKVKINGFGRYLINSSGETTELESFEINADETETLTLEGLGLRGEEWISITEVQL 423
LVDA T V + NAYD S+ GC+PDGC+A+ TRD +RWSC E L+ C ITY FEEPQDIVRI KING + +I SSG ++ E+++IN DET+ L++E L L +EWISITEV++
Sbjct: 608 LVDARKRTAVKKWANAYDDRTSEYGGCDPDGCKASFTRDRSWKDESRWSCSEK-LEDAQCNITYNFEEPQDIVRI----------------KINGEFKKIITSSGTSSTYETWDINTDETKWLSMEALNLDDDEWISITEVRI 733
BLAST of mRNA_F-serratus_M_contig1347.2577.1 vs. uniprot
Match: A0A6H5JFX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX1_9PHAE) HSP 1 Score: 103 bits (257), Expect = 8.230e-21 Identity = 63/152 (41.45%), Postives = 89/152 (58.55%), Query Frame = 1
Query: 4 LVDAGTITKVTETVNAYDT----TASDSGCEPDGCEAANTRDG---DLSTRWSCKEDFL-DGTNCEITYTFEEPQDIVRILIAFYKGDERSRELKVKING--FGRYLINSSGETTELESFEINADETETLTLEGLGLRGEEWISITEVQLMV 429
LV+A TIT + + +D + D GC GC DG D+ +RWSC ED + DG CEI +TF PQ++ ++ + F+KG+ER+R LKVKING FG + + T+ F++ A + T+TLE LGL +EWIS+ EV MV
Sbjct: 191 LVNAATITAIAASATGFDERPGQASGDHGCGKYGCLPVLATDGITDDVESRWSCAEDIVPDGGQCEIEFTFSHPQNLKQLQVDFWKGEERTRTLKVKINGEKFGEFDSHPGSVTSY---FDVIAYDVHTVTLESLGLDTDEWISLLEVIFMV 339
BLAST of mRNA_F-serratus_M_contig1347.2577.1 vs. uniprot
Match: D8LCQ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ5_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 3.540e-20 Identity = 53/121 (43.80%), Postives = 73/121 (60.33%), Query Frame = 1
Query: 76 GCEPDGCEAANTRDGDLSTRWSCKEDFL-DGTNCEITYTFEEPQDIVRILIAFYKGDERSRELKVKING--FGRYLINSSGETTELESFEINADETETLTLEGLGLRGEEWISITEVQLMV 429
GC PD + D +RWSC E+ + DG CEIT+TF+ PQDI + +AF+KGDER+R LKVKING G Y S + SF I + T+ +E +G+ ++WIS+ EV+ MV
Sbjct: 2 GCLPDLAHDG-VGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEY---ESYPGSTFNSFGIQENGVHTVAMESVGIDADDWISLLEVRFMV 118
BLAST of mRNA_F-serratus_M_contig1347.2577.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 7.210e-20 Identity = 60/148 (40.54%), Postives = 85/148 (57.43%), Query Frame = 1
Query: 7 VDAGTITKVTETVNAYDTTASDSGCEPDG---CEAANTRDG---DLSTRWSCKEDFLDGTN-CEITYTFEEPQDIVRILIAFYKGDERSRELKVKINGFGRYLINSSGETTELESFEINADETETLTLEGLGLRGEEWISITEVQLMV 429
V+ GT T+V + A+D D GC G C AANTRDG ++ +RWSC +D C+I +TF EPQ IV I +AF+KG+ER+R L+V ING + S + T + + A + T+ LE + L +EWIS+ EV + V
Sbjct: 89 VEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADAT-FNTLGVTATDVSTVMLESVALLSDEWISLIEVLIFV 235
BLAST of mRNA_F-serratus_M_contig1347.2577.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 1.760e-18 Identity = 60/148 (40.54%), Postives = 85/148 (57.43%), Query Frame = 1
Query: 7 VDAGTITKVTETVNAYDTTASDSGCEPDG---CEAANTRDG---DLSTRWSCKEDFLDGTN-CEITYTFEEPQDIVRILIAFYKGDERSRELKVKINGFGRYLINSSGETTELESFEINADETETLTLEGLGLRGEEWISITEVQLMV 429
V+ GT T+V + A+D D GC G C AANTRDG ++ +RWSC +D C+I +TF EPQ IV I +AF+KG+ER+R L+V ING + S + T + + A + T+ LE + L +EWIS+ EV + V
Sbjct: 340 VEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADAT-FNTLGVTATDVSTVMLESVALLSDEWISLIEVLIFV 486
BLAST of mRNA_F-serratus_M_contig1347.2577.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 5.830e-18 Identity = 60/144 (41.67%), Postives = 87/144 (60.42%), Query Frame = 1
Query: 10 DAGTITKVTETVNAYDTTAS-DSGCEPDGCEAANTRDGDLS--TRWSCKEDF-LDGTNCEITYTFEEPQDIVRILIAFYKGDERSRELKVKINGFGRYLINSSGETTELESFEINADETETLTLEGLGLRGEEWISITEVQLMV 429
+AGT+ VT + +DT ++ GC PDGC AANTRDGD+S +RWSC+ G+ C IT+T E+ + + I IA YKGD R+R + + ++G SSG TT ES + D+ + + L G L +EW+SI EV++ V
Sbjct: 26 EAGTVMSVTPEASVFDTRSTLPYGCPPDGCVAANTRDGDMSDESRWSCRPSLDASGSGCSITFTLEKVEYLGDIRIALYKGDTRTRTIDMYVDGRHITTWTSSGTTTGFESV-LLMDQGQVVELVG-DLNDDEWLSILEVEIDV 167
BLAST of mRNA_F-serratus_M_contig1347.2577.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 3.630e-17 Identity = 59/152 (38.82%), Postives = 87/152 (57.24%), Query Frame = 1
Query: 7 VDAGTITKVTETVNAYDTTASDS----GCEP---DGCEAANTRDG---DLSTRWSCKEDFLDGTN-CEITYTFEEPQDIVRILIAFYKGDERSRELKVKINGFGRYLINSSGETTELESFEINADETETLTLEGLGLRGEEWISITEVQLMV 429
V+ GT T+V+ + A+D A S GC +GC A N RDG ++ +RWSC LD C+I ++F EPQ+IV I +AF+KG+ER R L+V +NG + S ++T + + A+E T+ LE + L EWIS+ EV + V
Sbjct: 154 VEVGTKTEVSVSATAHDVRAGRSSGEVGCGEAGGNGCAANNARDGISTEIESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTLEVYVNGELTHTHESYADST-FNTLGVTANEANTVMLESVSLLSNEWISLIEVLIFV 304 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1347.2577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1347.2577.1 >prot_F-serratus_M_contig1347.2577.1 ID=prot_F-serratus_M_contig1347.2577.1|Name=mRNA_F-serratus_M_contig1347.2577.1|organism=Fucus serratus male|type=polypeptide|length=146bp TLVDAGTITKVTETVNAYDTTASDSGCEPDGCEAANTRDGDLSTRWSCKEback to top mRNA from alignment at F-serratus_M_contig1347:179652..181355- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1347.2577.1 ID=mRNA_F-serratus_M_contig1347.2577.1|Name=mRNA_F-serratus_M_contig1347.2577.1|organism=Fucus serratus male|type=mRNA|length=1704bp|location=Sequence derived from alignment at F-serratus_M_contig1347:179652..181355- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1347:179652..181355- >mRNA_F-serratus_M_contig1347.2577.1 ID=mRNA_F-serratus_M_contig1347.2577.1|Name=mRNA_F-serratus_M_contig1347.2577.1|organism=Fucus serratus male|type=CDS|length=876bp|location=Sequence derived from alignment at F-serratus_M_contig1347:179652..181355- (Fucus serratus male)back to top |