mRNA_F-serratus_M_contig1341.2548.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1341.2548.1
Unique NamemRNA_F-serratus_M_contig1341.2548.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1341.2548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1341contigF-serratus_M_contig1341:3075..7529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size324
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929319.1179252-CDS-F-serratus_M_contig1341:3074..31281622929319.1179252-CDS-F-serratus_M_contig1341:3074..3128Fucus serratus maleCDSF-serratus_M_contig1341 3075..3128 -
1690962797.223007-CDS-F-serratus_M_contig1341:3074..31281690962797.223007-CDS-F-serratus_M_contig1341:3074..3128Fucus serratus maleCDSF-serratus_M_contig1341 3075..3128 -
1622929319.1333783-CDS-F-serratus_M_contig1341:7259..75291622929319.1333783-CDS-F-serratus_M_contig1341:7259..7529Fucus serratus maleCDSF-serratus_M_contig1341 7260..7529 -
1690962797.2309463-CDS-F-serratus_M_contig1341:7259..75291690962797.2309463-CDS-F-serratus_M_contig1341:7259..7529Fucus serratus maleCDSF-serratus_M_contig1341 7260..7529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1341.2548.1prot_F-serratus_M_contig1341.2548.1Fucus serratus malepolypeptideF-serratus_M_contig1341 3075..7529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1341.2548.1

>prot_F-serratus_M_contig1341.2548.1 ID=prot_F-serratus_M_contig1341.2548.1|Name=mRNA_F-serratus_M_contig1341.2548.1|organism=Fucus serratus male|type=polypeptide|length=108bp
RRSRRLSQSSKRPRVDDESPCPPLAAVGRCCTCTVSSRKMTCSSRTPRRC
SFTASRARNAATFPTRARADLSPYRRRLREMAHGTSRPCTTLSLSRRGTS
ETEGEVY*
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mRNA from alignment at F-serratus_M_contig1341:3075..7529-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1341.2548.1 ID=mRNA_F-serratus_M_contig1341.2548.1|Name=mRNA_F-serratus_M_contig1341.2548.1|organism=Fucus serratus male|type=mRNA|length=4455bp|location=Sequence derived from alignment at F-serratus_M_contig1341:3075..7529- (Fucus serratus male)
AGGCGATCAAGGCGGCTATCGCAGAGTTCCAAGCGCCCCCGGGTAGACGA
CGAGTCCCCGTGCCCACCCCTCGCTGCGGTCGGTCGCTGCTGTACATGTA
CGGTGTCATCACGGAAGATGACGTGCTCAAGCCGGACCCCAAGAAGATGC
AGTTTCACTGCCTCGCGAGCTCGCAATGCCGCCACGTTTCCAACGCGGGC
ACGGGCGGACCTATCCCCATACAGAAGAAGGCTACGGGAAATGGCACACG
GCACCTCAAGACCGTGCACAGTGAGTAGCGAGATGAGCTCTACGTCTGGG
GGAGGGGGTTGAAGCGGAAGTCGGGGGGCGATTAAAAATACAAAAAAAAG
GCGTCGCGAGATTTACAGTATGTGTACAGTACAGTACAGTACAGTACGGT
ACAGTACATTGCTCAGAAAGTATAGGCGCGTTCTGGTTTTTCTTTAAAAA
ATACACATGTGTAAACATATTCAAGAGACATATACACGTATGTATACATG
TATGGCCACACATATAGTAGAGGAGTATGGATCAACCGGGTAAGGTTGCC
AATCCTGCTCGTGGTCAGCTGAACAGGGAAAATGATTATTCCCCTGTCCG
CGTTCGCGCCTGAGAATTTGATCTCGCGCGACGGGTACGGCAGTCCCTTC
CCGCGTCAGCCTGCTCATCCCCATACTAAGGCTGAATCTGGTGCTTACTT
ACGAGATTCCTCCCGAGTTCCGCGGCGGCGTCCATATATTTATATTAAAC
CGCCATACGCGATCGGGTCAGTCTCGGGTTTATCGGGTCACGCAATTGTG
TACCGATGGCGTTCACTGCAGAGAGTCCGCCGGCACAAGGCCAGTAAACC
TCAAGGTAGTTTCGAACGAGTGCTACCTCAGCAGGTCACCATGGACCAAA
TAATATACGCCTCTCTTTCCCACATCCACTACATGTATGACTATGACTGG
TATATATGTAAATAAATAAATACTACTACAGGTATATTATACTGAAGTAT
CAGGCAACTATATATAGAGATAGAGCTATCTTCTTTTTCTTGTTTCTTTA
ATCTCACTTACTAATAGTATAGCCGATGGACCTCATAATTACCATCCTGC
CTGTGGTCACAAAGGATCTTCCCACCTCTCCCCGGTGCCCGCCTTACACT
ACTAGTTTTTATCGTGATGCAAGTTCAGCAGTCTTACAACTCGTCAACCA
ATGGTTGAATTTTACTTACTCGCGTTCCCACGCTTTCCGCTACGAAAGAA
AGAACACGAATCTTACTTTGGTAAGAATCGAACTCACGACTTCCGCACTA
GCAGGTGTGCAGGTTACCAGCTAGACCACTCGGGCGACGAATATCTGATT
TAAATATGCATCGTATATGATTTATGCATGTATATTTTGTGGATACAAAA
TGCCCAAGTCGCATTCGAGGATTTTTCAGGTAGTTTTCGGCTTCATCTAT
CTTATGTAGACTGCAGTTTTCTCTATTAATATTAATACTAATACTAATGA
ATACAAGGGACCCGAGAGAAAATCCCGTAACTGTAGAAAATGGGGCGTTT
CGAGATAGATCCCTATGTGGTTCAGTCGGGCCTTTTTCAACGCCCATTTT
TTTTCATAGCAGGATAAGAAACGTACGCGTATCTGCACGTGAAAACCGCT
CCAACTACGATACTGTACTCTATCAATGACGTGCACCGGTAGGCTCCAAA
CGTAAACGGCCCTGATAGCGTTGACGATTTCAACGTTACATCTATCTGCT
GTGAACACCTGTACTAGGTATACTGTACCAGTATGATAATCTAGACGCAA
GCAATCCCCTTGAAACGATCATTCCGTTGATAAATGGGCCCTCGGATCGG
TTGACTGGAATACGTTGGGAGCCCTGCACAGTCCCCCAACGTTTGGTGGG
CAGTTAGTTACAGGTAAACCATTGTAGCATGATCTGTGCGCTTACTCTAT
CGTAGAGAAGGCATTTTGCAAAAAAAAAGGATTTGGATACATATCGTATA
CCAGGTACCTGGTATAGTATATTTATGCATTAATACCACCACCGCAGCTG
TGCGGGACGGCAGTTCGCATCCACTCAGACAGACAGACAGACAGACAGAT
AGTACCAACAAGAGCAAAGAGCTTCATTTGTACTGTACTGTACTGTACTG
GTAAAATGGCACGGCGCCCTCCTGGCGAACGGGTGGCTCTAGATCATCCA
TCACCAAAGATGGGATCGGCAACGTTCCAGCGCGGGGGAGGACTGGTTCC
CCTCGAACGTGGCCGACTGGCCCCACCGCCAGAAAGTGAGCAACGCCTAG
AAAAGAGCGATATCAAAGCAGTCAAAGCCATCAGAGTACAGAAACAACTA
ACATCCATTGAAGTGCTGTACAGTACAGTACAGTATTGGTATTGCATTGT
GTATTGTTTTGAGTCACAGCACCGCCGGGATGAATCGATGGTCACTACCT
GTACCGTATTATAGTATTATAGTATTATAGTATCATAGAATAGTAGTCTT
TTCCCCTATTCTCTTCTTAATATACTATGACTATCAAATCATTAATATGA
ATAACTTAACGCGGTATACTGGTACACTTGTTGACTGGTTGGTATTACTC
TAAACTATTGTAAGCACTAGGATATGGCTGTACTCTGCTCTACTCTACTG
TACTGTATTGTACTGTACTGTACTGTACTGTACTGTGAAGAAGTAAGCCC
ATGGATCGGTGATTTGGTCAAAATTCGCCACCACGATTAGTACGCCTACT
ATACTGGATACAGTATTTTTCTATTAGCTGCTCTACACTACTTTAGTCTA
GTCTAGTCTAGTCTACGGCATTTTAATGCTGGCAAGTGCTGTAGCGGGGA
GAAAGGTTCATCCCTGATCACGGCTGTACTGTACTGTAGTTATAGTTTTT
ATAATATTTACAGTATCTATAGTATTTATATATAATATTTGATAGTATTT
ATAATACTATTAGTATTAATAGTATTTACCAGTATAATATTAGAGTGGAG
GGAGGAGGGGCAGCGCCATGTCATAGTCCTCAAACATATAGCAAGAGTTT
GGATCAACCGGATAAGATTGAAGATTGCCAATCCGAACAGGAAAAATGCT
TTTTTTCCTTTTCCCGTTCGCGCCTGAGGACTATGACAGTAATACAGTAA
TACAGTAATACAGTAATACAGTAATTTGGTCTCGCGAGACGGGTTCGGCA
GTCCCGTCCCGCGTCAGCCTGCTCATTCTCCATACTCAGGCTGAATCTGG
AGCTTACTTACCGGATTCCTCCCGATTTCCGCGGTGGCGTCCATTTATTT
ATTTATAAACCGCCATAATACGCCATCGGGTCAGTCCCGAGTTTATCGGG
TCACGCAATCGCGTACAGTACAGTACAGTACCGATGGTGTTCACTGCAGA
GAGTCCTTCGGCACAGTAATAGCTACAGATAGTAAAACTCAAGGTAGTTC
AGTTCCGAACGGGTGCTGCCTTGGCAGGTCACCATGGACCAATTAATATG
CGCCTCTCTTTCCCACACCCTTTAAAGACTATTGGTATGGAGTGGCGGCG
TGTAGACTATATAGGTGTGGTCAGCGCATTCAACGGAGTATGGATCAGCC
GGGGGTATGGTTGCTAATCCCGCTCGTGGTCAGCTGAACAGGGAAACCTC
TTTTTTACCCTGCCCTGTACAATAACACTATTTATAACAATAACACTATT
AATAACAATAACAACACTTGGGTCATACTCAAAAGTATAGTATACGCTCT
GTACAGAATGCAGATAGATTAATTTCAACACGTACACTGTTGGAGCTATG
GTCTAATTACAATACGCTTGATTCGTCAGTTTCATTTGACGTTCAACGGA
GCTACGGGATAGAGTAGGTACTATAGTTCAGTATTATCATATAAATAGTA
TTAATACTATTTACCGTAATATAATATATATATATATATTAATAATAATA
CAGTGGTATTATAGTATTATCATTATTATTACTGTTATTGATGATAGAGT
AGTTAGTACCGTCCCCTTTTTTGACCATACTAGTAACAAGTGATGCTATC
AATACTGACAAATAGTGTAATCATACGGACCCTCTTGTTCAAGTCTATGA
CAGGAGTAGGTACTATTATTGATACTACATTATGTTCGGTCGATGTGAGA
TGTTTTTCTAAAGACTCGTCGAAAGTCTTCCTCGAGCGTTGAGCATTGCA
CTCGACAGTAAGTAAAATCGTACCTGGTAGGCATCAAGTACTATAGCCAT
TGTTAGTGTAATGTAAAGTATAGTACAGTATAGTAAAGTACAGTATGTTG
CGTGTTATTGTCCCTGTTTAATACCAATAGTGTGTCTATCTGTCTGTCTG
TCTGTCTGTCCCTCATATCAATACATAATTACTAATGTGGCATGTTTCCA
GACGTTGAGTCTGTCAAGGCGAGGAACGAGCGAGACCGAAGGGGAAGTCT
ACTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1341:3075..7529-

>mRNA_F-serratus_M_contig1341.2548.1 ID=mRNA_F-serratus_M_contig1341.2548.1|Name=mRNA_F-serratus_M_contig1341.2548.1|organism=Fucus serratus male|type=CDS|length=648bp|location=Sequence derived from alignment at F-serratus_M_contig1341:3075..7529- (Fucus serratus male)
AGGCGATCAAGGCGGCTATCGCAGAGTTCCAAGCGCCCCCGGGTAGACGA
CGAGTCCCCGTGCCCACCCCTCGCTGCGGTCGGTCGCTGCTGTACATGTA
CGGTGTCATCACGGAAGATGACGTGCTCAAGCCGGACCCCAAGAAGATGC
AGTTTCACTGCCTCGCGAGCTCGCAATGCCGCCACGTTTCCAACGCGGGC
ACGGGCGGACCTATCCCCATACAGAAGAAGGCTACGGGAAATGGCACACG
GCACCTCAAGACCGTGCACAAGGCGATCAAGGCGGCTATCGCAGAGTTCC
AAGCGCCCCCGGGTAGACGACGAGTCCCCGTGCCCACCCCTCGCTGCGGT
CGGTCGCTGCTGTACATGTACGGTGTCATCACGGAAGATGACGTGCTCAA
GCCGGACCCCAAGAAGATGCAGTTTCACTGCCTCGCGAGCTCGCAATGCC
GCCACGTTTCCAACGCGGGCACGGGCGGACCTATCCCCATACAGAAGAAG
GCTACGGGAAATGGCACACGGCACCTCAAGACCGTGCACAACGTTGAGTC
TGTCAAGGCGAGGAACGAGCGAGACCGAAGGGGAAGTCTACTAGACGTTG
AGTCTGTCAAGGCGAGGAACGAGCGAGACCGAAGGGGAAGTCTACTAG
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