mRNA_F-serratus_M_contig1340.2547.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1340.2547.1
Unique NamemRNA_F-serratus_M_contig1340.2547.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1340.2547.1 vs. uniprot
Match: D8LLN9_ECTSI (Similar to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 3.010e-13
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 3 
Query:  108 ESASLTLGTFQGPVIIDMGVLKVGEARTVTLLIIAPEGARRASTTFAVDPKHPSRPGLET-DIRGDVSLAPGQ 323
            E+A L LG FQG V++DMG++ VGE +  TL I  PEGAR+A TT   DP+HP   GLE  D  G++SL  G+
Sbjct:   22 ETAVLVLGNFQGAVVLDMGLVTVGEGKGATLRIEVPEGARKAVTTIGFDPRHPLSGGLEVADFDGELSLGRGE 94
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1340.2547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLN9_ECTSI3.010e-1352.05Similar to asp (Abnormal spindle)-like, microcepha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1340contigF-serratus_M_contig1340:221158..226398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue3.8e-11
Seed eggNOG ortholog2880.D8LLN9
Preferred nameASPM
KEGG koko:K16743,ko:K16774
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000922,GO:0001764,GO:0002052,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007399,GO:0007405,GO:0007417,GO:0007420,GO:0007548,GO:0008150,GO:0008283,GO:0008284,GO:0008406,GO:0008584,GO:0009786,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010720,GO:0010721,GO:0015630,GO:0016020,GO:0016043,GO:0016324,GO:0016477,GO:0017145,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0021537,GO:0021543,GO:0021872,GO:0021873,GO:0021987,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030154,GO:0030177,GO:0030496,GO:0030900,GO:0032501,GO:0032502,GO:0032504,GO:0036445,GO:0036449,GO:0040007,GO:0040011,GO:0042127,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045137,GO:0045177,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045769,GO:0046546,GO:0046661,GO:0048103,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051094,GO:0051179,GO:0051225,GO:0051235,GO:0051239,GO:0051240,GO:0051241,GO:0051301,GO:0051302,GO:0051321,GO:0051445,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051653,GO:0051657,GO:0051661,GO:0051674,GO:0051704,GO:0051726,GO:0051782,GO:0051960,GO:0051961,GO:0051962,GO:0055057,GO:0060284,GO:0060322,GO:0060828,GO:0061351,GO:0061458,GO:0061842,GO:0065007,GO:0065008,GO:0070925,GO:0071840,GO:0071944,GO:0072089,GO:0072091,GO:0072686,GO:0072687,GO:0090263,GO:0090306,GO:0097150,GO:0097431,GO:0098590,GO:0098727,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140013,GO:1902692,GO:1903046,GO:1990752,GO:2000026,GO:2000177,GO:2000179,GO:2000241,GO:2000648
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759,KOG0165@1,KOG0165@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size323
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1340.2547.1prot_F-serratus_M_contig1340.2547.1Fucus serratus malepolypeptideF-serratus_M_contig1340 221158..226321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929319.047062-CDS-F-serratus_M_contig1340:221157..2213071622929319.047062-CDS-F-serratus_M_contig1340:221157..221307Fucus serratus maleCDSF-serratus_M_contig1340 221158..221307 -
1690962797.197696-CDS-F-serratus_M_contig1340:221157..2213071690962797.197696-CDS-F-serratus_M_contig1340:221157..221307Fucus serratus maleCDSF-serratus_M_contig1340 221158..221307 -
1622929319.064313-CDS-F-serratus_M_contig1340:226225..2263211622929319.064313-CDS-F-serratus_M_contig1340:226225..226321Fucus serratus maleCDSF-serratus_M_contig1340 226226..226321 -
1690962797.2076066-CDS-F-serratus_M_contig1340:226225..2263211690962797.2076066-CDS-F-serratus_M_contig1340:226225..226321Fucus serratus maleCDSF-serratus_M_contig1340 226226..226321 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929319.0808434-UTR-F-serratus_M_contig1340:226321..2263981622929319.0808434-UTR-F-serratus_M_contig1340:226321..226398Fucus serratus maleUTRF-serratus_M_contig1340 226322..226398 -
1690962797.2146895-UTR-F-serratus_M_contig1340:226321..2263981690962797.2146895-UTR-F-serratus_M_contig1340:226321..226398Fucus serratus maleUTRF-serratus_M_contig1340 226322..226398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1340.2547.1

>prot_F-serratus_M_contig1340.2547.1 ID=prot_F-serratus_M_contig1340.2547.1|Name=mRNA_F-serratus_M_contig1340.2547.1|organism=Fucus serratus male|type=polypeptide|length=82bp
MKSMSSPMEAESASLTLGTFQGPVIIDMGVLKVGEARTVTLLIIAPEGAR
RASTTFAVDPKHPSRPGLETDIRGDVSLAPGQ
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mRNA from alignment at F-serratus_M_contig1340:221158..226398-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1340.2547.1 ID=mRNA_F-serratus_M_contig1340.2547.1|Name=mRNA_F-serratus_M_contig1340.2547.1|organism=Fucus serratus male|type=mRNA|length=5241bp|location=Sequence derived from alignment at F-serratus_M_contig1340:221158..226398- (Fucus serratus male)
TCTGTTTCCAAAAGCAGTAGATTGATCTGGATGCAAAGACAGGAGCTGGC
GGGTGCCTTGAAAGGGAATCGTCCACGATGAAATCTATGTCGAGCCCGAT
GGAAGCGGAGTCAGCCTCGTTGACCCTAGGAACCTTCCAGGGTCCAGTTA
TCATCGACATGGGCGTCTTAAAGGTAGGTGCTGCACAATCGATGGCCATA
TATATATGCCTATATATATATATAGATCAACCGAGTAAGGTTGCCAGTCC
TGCTCGTGGTCAACTGAACAGGGAAAATGATTAGATCCCTGTTCGCGTTC
GCGCCTGATGTTTAGGTCTCGCGAAACGGGTCCTGCGGTCCCGTCCCGCG
CCAGCCCACTTATCTCCATACTCAGGCTGAATCTACCGCTTCAAACGGTC
CAAACCTTCACTTTCTGTTTCCGGCGCCAAAAAGTTAAGAGTTCCCGCCG
GTACTTTCAACATGCCCACTTCATACCAATGGTGGGTGTGGGAAAGAGAG
GCGAATATTTATTGGTTCATGGTACCTGTCAAGGCAGCACTCGTTCGGAA
CTACCTTGAGGTTTACTGGCCCCGTGCCGGCCGACTTTCGGCAGTGAACG
CCATCGGTACGCAATTGCGTGACCCGATAAACTCGGGACTGACCCGATGG
CACATGGTTTGTATGTATGTATGTTTGGTCATCACATATAGCAGAGTATG
AATCAACCGTGTAAGGTTGCCAATCCTGCTCGTGGCCAGCTGAACAGGGC
AAATGAGTGTTCCCCTATCCCCGCCCGTGCCTGAGAATTTGGTCTCGCGA
GACGGGTTCAGCCGTCCCGTCCCGCGTCAGCCTGCTCATCTCCATACTCA
GGCTGAATCTGGTGCTTACTTACGGGATTCCTCCCGAGTTCCGCGGCGGC
GTCCATTTATGAAACCGCCATACGCCCTCGGGTTAGTCCCGAGTTTATCG
GGTCACGCAGTTGCGTACCGATGGCGTTCACTGCGGAGAGTCCGCCGGCA
CAGGGCCGGTAAACCTCAAGGTAGTTCCGAACGAGTGTGATTATAAATGA
ATACTGGGCGCTGCTGCGGAACTCGGCAGGAATCCCGTGAGTAAGCACCA
GATTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCGGAACGGGACTGTC
GAACCCGTCTCGCGAGACCAAATTTTCAGGCACGAACGCGGACAGGGAAA
TATTCATTTTTCCTGTTCAGCTGACCACGTGAAGGACTGGCAGCCTTACC
AGGTTAATCCATACTCTTGCTATAGTTTTTGTGACGAAGTTTTCGAATCT
GAGCGGGACAGATTTCACCAGGCATGTACCAATCAAAATTCCTAATTTCA
ATAGGCATGTATCAATCAATTTTCTTAATTTTATTAGGCATGTATAAGTA
CCAATCAAAGTGATGCGACGACAGTCCAGCAAGTTCACAAAGGAAAAGGA
TCACACAACACAACACACACGACGAAGGATGCGACCTTCTGGAAGCTGGC
CATTAGGGGCGAGGACCAAAAATCGTACACCTGGCGCCAGAAGCGGACCA
CTAGTTGGCCATGTCAACCTCGCCCACCAGTTTCAGGGGCTCCTCAAAAT
CCCTAATTCAATAGGCATGCATGTACCCACCGAAATCCTCTATTTTCACG
AAGTTCACGAAGGATGCGCCACCGACCTCGAGGAATGAGCCATCGGTTGG
GCATCCACACATCACCTAGCAGCGATAATTTGATGAGGCAGCTCTACCGG
AGTAAACCTGCGACGATTGTGGATCTGTGCGTCGCCTGAAGCCCACAGAC
TATCATATGTATCTCAATGGCCAGCAGTAACTTCTTCGCGGCTGTGCTTG
ATATTTCACGAAAGTCGACGGCTGTAAAGGAACGAGCTTACCATAGACTA
ACGATATATTGCATTACTGTACACAAAATCCACGTCTCTACAACTAAAAG
CTTTGCTGCAGATGTGTGTTAGCTGCCCACAGTAGAAGCCATGCGACCGT
GCCTCTGGTTGGTCGCCTGACAATGTACAATCAATACTGTATTATAGTGC
AAGTTATGTTTCGCCATATTATGCCGGGTTTATACTATTTACTACCATCT
GTGCACAACAACTTCTAAGTACTACAGTTAGTTGAACTGACTCTGATATT
ACTCGACTTTTTGAGCATCCCCCGTAGGGGGAGGAAATGTCAAAACGTTT
AGGCCGGGTCAAAGGCTGCAGTGACAAAAACCTCTTCATGGTATTAAACA
GGTTCCCCAATGCATATAACATTGGGTCAACAGTATAATGTCGGGGAGAA
ACCCACCGTTATACTGTACATTTACATTAATCTCCATGCAGGGACACCAT
AAAAGCATTAGGCAAAAACCAGAGACAGAGTAGTACAACCTCCAAATGGT
AAAATCAGAACAGCACCTAGACTTTTTGAGCATCCCCCGTAGGGGGAGGA
AATGTCAAAACGTTTAGGCGGGGTCAAAGGCTGCAGTGACAAAAACCTCT
TCATGGTATTAAACAGGTTCCCCAATGCATATAACATTGGGTCAACAGTA
TAATGTCGGGGAGAAACCCACCGTTATACTGTACATTTACATTAATCTCC
ATGCAGGGACACCATAAAAGCATTAGGCAAAAACCAGAGACAGAGTAGTA
CTACCTCCAAATGGTATTAGTAATATTGTACATACAAAGCCCAAACATGG
TATATTAAACAATCATGCCTCAACATACCCACAGGAATATAAGGTTAGTA
CTAGTATACCCCATTAAGTCATAAAGGAGTAGAGTTTGATGAATATACCC
TTTCTGTTTGGGGTAGACAGGGAGCTTAGGTTACACTAAATTATCTAGGC
TCGGGTGGGGGTAACTATTAATAGTGGTCATTTCTATTCACCAATCAGTA
ATCAAGCACCACCAGTAGAATGGGAGAGGTTTATTAGTATACTTCGCCCT
ACCAATAGTTGCCCTCTATATTAGTATACTTTACCCTACCATTATTTATC
ATGCAGGGTTATCCACATAAGAGACGGGGAACTTTAGGTTAAAGAAAAGT
CAGAGTCTTTTAGAGAAAAATCAGAACAGCACCTAGAATATTACAACTAG
GGACAGCAGTGTCATACAGGGGGATAGAGGTACTGAGGTATATAGGACAA
ATCAGAGCTCCCTTGGGTCTTCTGGGTACATAGACGTTTAGGTGAGGTCA
ACTTCTTCATGATTATCATTGTATACCAGGTACAGTTTATAGGTGCATAG
TATAATCAAAGACAATACAGTTTTAGTAGTAGTCGTAGATACCTACGAGG
TACAGTATAATTTCAGGTGAAGTATGATTTTAGGCTAAGAGTTCAGACAA
GGACAAGAGGACCCTGAAGCAGATGTCTTCAACACAATCCAGAAAGTAGA
AAAAGCAGTATTCACCTGAAAGTAGACGAGCAGCAGTAGGAGATCACACG
AGGAGGTAAGAGACACGCGGAAAGAACTGGGTTCCTCGCTCCAACTTGTC
AGCACTTGTTGTTGTTGTTGTCTTCACATTAAAAACCGTTCTGACCTCTA
TCCAGTACCTTCTCTTTCTTACTCTTCAAGGCAAAGAAACGAATTTCCGT
GGTCACAGGCTAACCCAAACTAAGGTACAGAAAAATAATAAAATAAAATA
AAAAGACCCAGAGAAGGTTCCAACATTAGCCAAAAAATAAAATAAAATAA
TAATAATAACAAGTTCAGAAAACAAGAAGCAGGTTGAGGCAAGAAAAAAC
CCCAACAAGGAAGTAGAGCCCATCGCTCCAAACTCGGGAGCTGAGTCACA
AAATAAAAAGAAATACAGATATATATAGGGGTACCAATACAGGTACAAAA
CTAAATTTGAAGAGGACGCTATCCCCCCTCCCCTACGATGCCGGGGAGTG
TTCATCGTCGGGTTCACGCCGACCAGGCCATTCCCACTCAACACCCTGGG
GCTGTAGCACTACGACACACCAATACCCCTCATGCTGAAACTGAGCAATG
GTCCCGCGTTGACCAGAAATAACGACGAAGGAGTATTCGTGTATCAAAAT
CAACTGATCAAGAGGGTCTCAGGTCCTCATGTGATCTCCCATATCCCATC
CTATATGATGACCCAAAGTTTCTTCAACTTCTTGTCTTGTATTCTGGGCT
CCGTTTCCAAGCTGACATGCTGCCCCCCGGGGGTTCGAACGGTTCGTTGT
TGCGGTGAATCTTGCTTCAATCTTCCAGGTAGAGCGAGTTTTATATTAAG
TACCGGTACTGGTATATATGATGAACTTTCTATTAATAGTGTCCGTTGGG
TTAAGGGAGGTTTCTGTAGATCATTTTGAATACAGATTTTCAAAAATCGC
ATTGCTGCAGTCTGACGATGCTGTGCCGCTGTTCCACGCACCACATAGCT
AGCAGCGGTACTACAATGAGGCAGCTTTGCAGGAGTAAACCTGCGAGTGT
TGATCTATGCGTCGCCTGAAGCCCACGAAGTGTCAAATGTATTTCGATGG
GAAGCAGTAGAGAGTACAGTATCAGCCGTTCGATCAAGAAGTGTTGTAAT
TTGTAATTTGTAATATTTCGCGGCCTTCGGCCGCATATAATTAAACCCTC
AGGAGGCTGTCGCCATGAACCAATTTTTGTGTGCCTCTCTTTTCTCTTTT
CTCTTTTCAAACAATCTGAACGCATCTAGACCTTCTGAGCATCCCCCAGT
CAGGCGGGGAAATGTCAGAACGTTTTGATACTGTACTGTCTGTAGTAATA
GTATTAATAGTGCAGAGGGTACAGTACAGAAGAACAGGAAATGTTGTGTA
CGAAGGGTAGCCATTACATGAAATAGCGGGATACGCACACACTATTAATG
GCTACGTCTCTTGTTTGTACGGAAGCTACACAGTGGTTCTAATACTGTCT
GTACGTACAAGCAGTTTGATAAATACTTGCACTGTTGTGTGCTGTGTACT
GGTACTGCAGAGCGTGATACAGTTGTAGAAGCAGCTCGTCATTCTATGAT
CAATAGAGCTTTACAAAAATAAACAAAGAACATCTTGAAATCCCCTTCGA
CGACGACCCGCTCTCTCTGTCCGACACACGTCGGGGAGCAGGTGGGCGAA
GCCAGAACGGTGACATTGCTCATCATAGCTCCAGAGGGAGCCAGGCGGGC
ATCGACGACCTTCGCCGTCGATCCCAAACACCCTTCGCGTCCTGGACTGG
AGACCGACATCAGGGGTGACGTGTCGCTTGCACCGGGCCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1340:221158..226398-

>mRNA_F-serratus_M_contig1340.2547.1 ID=mRNA_F-serratus_M_contig1340.2547.1|Name=mRNA_F-serratus_M_contig1340.2547.1|organism=Fucus serratus male|type=CDS|length=492bp|location=Sequence derived from alignment at F-serratus_M_contig1340:221158..226398- (Fucus serratus male)
ATGAAATCTATGTCGAGCCCGATGGAAGCGGAGTCAGCCTCGTTGACCCT
AGGAACCTTCCAGGGTCCAGTTATCATCGACATGGGCGTCTTAAAGATGA
AATCTATGTCGAGCCCGATGGAAGCGGAGTCAGCCTCGTTGACCCTAGGA
ACCTTCCAGGGTCCAGTTATCATCGACATGGGCGTCTTAAAGGTGGGCGA
AGCCAGAACGGTGACATTGCTCATCATAGCTCCAGAGGGAGCCAGGCGGG
CATCGACGACCTTCGCCGTCGATCCCAAACACCCTTCGCGTCCTGGACTG
GAGACCGACATCAGGGGTGACGTGTCGCTTGCACCGGGCCAGGTGGGCGA
AGCCAGAACGGTGACATTGCTCATCATAGCTCCAGAGGGAGCCAGGCGGG
CATCGACGACCTTCGCCGTCGATCCCAAACACCCTTCGCGTCCTGGACTG
GAGACCGACATCAGGGGTGACGTGTCGCTTGCACCGGGCCAG
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