mRNA_F-serratus_M_contig1340.2545.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1340.2545.1
Unique NamemRNA_F-serratus_M_contig1340.2545.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1340.2545.1 vs. uniprot
Match: D8LLN9_ECTSI (Similar to asp (Abnormal spindle)-like, microcephaly associated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN9_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.110e-33
Identity = 89/156 (57.05%), Postives = 103/156 (66.03%), Query Frame = 2 
Query:  845 RREWAGRWLALRRRFSAHTAATRIQAIARGTAVRRTAGRRIAVARCKIVEAAERARADPSQILGVKVKDALWDLEHSTRLTAIVRACIALELTSRYSGKVCCQVMAESRCPEVMYDLVHGLNRSPRTREFLYTSLRPSSTSHSAGMGCHS*SRHPP 1312
            R E A RWL L RRFS   AAT IQA ARG A R+  G  IA AR +I +A   A ADPSQILG +V DAL  LEH T LTAI+RACIALELTSRYS KVCC+VMA SRCP+V+YDL+ GLNRSP  ++ L  ++         G G  +    PP
Sbjct: 2252 REEAAARWLVLGRRFSRAKAATMIQAAARGMAARKKTGPGIASARARIEKANANALADPSQILGTRVNDALTALEHCTHLTAIIRACIALELTSRYS-KVCCEVMARSRCPQVLYDLIRGLNRSPPHQKILKYAITTFRNIAQRGDGLPALLAAPP 2406
[Close]
BLAST of mRNA_F-serratus_M_contig1340.2545.1 vs. uniprot
Match: A0A6H5KRH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRH5_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 4.930e-32
Identity = 82/131 (62.60%), Postives = 94/131 (71.76%), Query Frame = 2 
Query:  845 RREWAGRWLALRRRFSAHTAATRIQAIARGTAVRRTAGRRIAVARCKIVEAAERARADPSQILGVKVKDALWDLEHSTRLTAIVRACIALELTSRYSGKVCCQVMAESRCPEVMYDLVHGLNRSPRTREFL 1237
            R E A RWL L RRFS   AAT IQA ARG A R+     I+ AR +I  A   A ADPSQ+LG +V DAL  LEH T LTAI+RACIALELTSRYS KVCC+VMA SRCP+V+YDL+ GLNRSP  ++ L
Sbjct: 2133 REEAAARWLVLGRRFSRTKAATMIQAAARGMAARKKTDPGISSARARIERANANALADPSQVLGTRVNDALTALEHCTHLTAIIRACIALELTSRYS-KVCCEVMARSRCPQVLYDLIRGLNRSPPHQKIL 2262
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1340.2545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLN9_ECTSI1.110e-3357.05Similar to asp (Abnormal spindle)-like, microcepha... [more]
A0A6H5KRH5_9PHAE4.930e-3262.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1340contigF-serratus_M_contig1340:161261..173889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.7
Seed ortholog evalue4.5e-33
Seed eggNOG ortholog2880.D8LLN9
Preferred nameASPM
KEGG koko:K16743,ko:K16774
Hectar predicted targeting categorymitochondrion
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000280,GO:0000922,GO:0001764,GO:0002052,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0005874,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007399,GO:0007405,GO:0007417,GO:0007420,GO:0007548,GO:0008150,GO:0008283,GO:0008284,GO:0008406,GO:0008584,GO:0009786,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010720,GO:0010721,GO:0015630,GO:0016020,GO:0016043,GO:0016324,GO:0016477,GO:0017145,GO:0019827,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0021537,GO:0021543,GO:0021872,GO:0021873,GO:0021987,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0030111,GO:0030154,GO:0030177,GO:0030496,GO:0030900,GO:0032501,GO:0032502,GO:0032504,GO:0036445,GO:0036449,GO:0040007,GO:0040011,GO:0042127,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045137,GO:0045177,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045665,GO:0045769,GO:0046546,GO:0046661,GO:0048103,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051094,GO:0051179,GO:0051225,GO:0051235,GO:0051239,GO:0051240,GO:0051241,GO:0051301,GO:0051302,GO:0051321,GO:0051445,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051653,GO:0051657,GO:0051661,GO:0051674,GO:0051704,GO:0051726,GO:0051782,GO:0051960,GO:0051961,GO:0051962,GO:0055057,GO:0060284,GO:0060322,GO:0060828,GO:0061351,GO:0061458,GO:0061842,GO:0065007,GO:0065008,GO:0070925,GO:0071840,GO:0071944,GO:0072089,GO:0072091,GO:0072686,GO:0072687,GO:0090263,GO:0090306,GO:0097150,GO:0097431,GO:0098590,GO:0098727,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140013,GO:1902692,GO:1903046,GO:1990752,GO:2000026,GO:2000177,GO:2000179,GO:2000241,GO:2000648
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759,KOG0165@1,KOG0165@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons8
Model size1646
Cds size912
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1340.2545.1prot_F-serratus_M_contig1340.2545.1Fucus serratus malepolypeptideF-serratus_M_contig1340 161646..170551 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929318.5208685-UTR-F-serratus_M_contig1340:161260..1616451622929318.5208685-UTR-F-serratus_M_contig1340:161260..161645Fucus serratus maleUTRF-serratus_M_contig1340 161261..161645 +
1690962796.9298546-UTR-F-serratus_M_contig1340:161260..1616451690962796.9298546-UTR-F-serratus_M_contig1340:161260..161645Fucus serratus maleUTRF-serratus_M_contig1340 161261..161645 +
1622929318.6488922-UTR-F-serratus_M_contig1340:170551..1705981622929318.6488922-UTR-F-serratus_M_contig1340:170551..170598Fucus serratus maleUTRF-serratus_M_contig1340 170552..170598 +
1690962797.0104585-UTR-F-serratus_M_contig1340:170551..1705981690962797.0104585-UTR-F-serratus_M_contig1340:170551..170598Fucus serratus maleUTRF-serratus_M_contig1340 170552..170598 +
1622929318.670242-UTR-F-serratus_M_contig1340:170979..1710601622929318.670242-UTR-F-serratus_M_contig1340:170979..171060Fucus serratus maleUTRF-serratus_M_contig1340 170980..171060 +
1690962797.018544-UTR-F-serratus_M_contig1340:170979..1710601690962797.018544-UTR-F-serratus_M_contig1340:170979..171060Fucus serratus maleUTRF-serratus_M_contig1340 170980..171060 +
1622929318.685433-UTR-F-serratus_M_contig1340:173668..1738891622929318.685433-UTR-F-serratus_M_contig1340:173668..173889Fucus serratus maleUTRF-serratus_M_contig1340 173669..173889 +
1690962797.0268686-UTR-F-serratus_M_contig1340:173668..1738891690962797.0268686-UTR-F-serratus_M_contig1340:173668..173889Fucus serratus maleUTRF-serratus_M_contig1340 173669..173889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929318.5366116-CDS-F-serratus_M_contig1340:161645..1619621622929318.5366116-CDS-F-serratus_M_contig1340:161645..161962Fucus serratus maleCDSF-serratus_M_contig1340 161646..161962 +
1690962796.9443889-CDS-F-serratus_M_contig1340:161645..1619621690962796.9443889-CDS-F-serratus_M_contig1340:161645..161962Fucus serratus maleCDSF-serratus_M_contig1340 161646..161962 +
1622929318.551918-CDS-F-serratus_M_contig1340:162696..1629131622929318.551918-CDS-F-serratus_M_contig1340:162696..162913Fucus serratus maleCDSF-serratus_M_contig1340 162697..162913 +
1690962796.9613116-CDS-F-serratus_M_contig1340:162696..1629131690962796.9613116-CDS-F-serratus_M_contig1340:162696..162913Fucus serratus maleCDSF-serratus_M_contig1340 162697..162913 +
1622929318.5699728-CDS-F-serratus_M_contig1340:167523..1676451622929318.5699728-CDS-F-serratus_M_contig1340:167523..167645Fucus serratus maleCDSF-serratus_M_contig1340 167524..167645 +
1690962796.9736855-CDS-F-serratus_M_contig1340:167523..1676451690962796.9736855-CDS-F-serratus_M_contig1340:167523..167645Fucus serratus maleCDSF-serratus_M_contig1340 167524..167645 +
1622929318.5849698-CDS-F-serratus_M_contig1340:168484..1685581622929318.5849698-CDS-F-serratus_M_contig1340:168484..168558Fucus serratus maleCDSF-serratus_M_contig1340 168485..168558 +
1690962796.9832327-CDS-F-serratus_M_contig1340:168484..1685581690962796.9832327-CDS-F-serratus_M_contig1340:168484..168558Fucus serratus maleCDSF-serratus_M_contig1340 168485..168558 +
1622929318.601095-CDS-F-serratus_M_contig1340:170166..1702891622929318.601095-CDS-F-serratus_M_contig1340:170166..170289Fucus serratus maleCDSF-serratus_M_contig1340 170167..170289 +
1690962796.9926639-CDS-F-serratus_M_contig1340:170166..1702891690962796.9926639-CDS-F-serratus_M_contig1340:170166..170289Fucus serratus maleCDSF-serratus_M_contig1340 170167..170289 +
1622929318.6190765-CDS-F-serratus_M_contig1340:170492..1705511622929318.6190765-CDS-F-serratus_M_contig1340:170492..170551Fucus serratus maleCDSF-serratus_M_contig1340 170493..170551 +
1690962797.0015006-CDS-F-serratus_M_contig1340:170492..1705511690962797.0015006-CDS-F-serratus_M_contig1340:170492..170551Fucus serratus maleCDSF-serratus_M_contig1340 170493..170551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1340.2545.1

>prot_F-serratus_M_contig1340.2545.1 ID=prot_F-serratus_M_contig1340.2545.1|Name=mRNA_F-serratus_M_contig1340.2545.1|organism=Fucus serratus male|type=polypeptide|length=304bp
MALSRYRRTVEAAVVVQSSVRGAMAAARYRRTISAIICTQTWWRGEAALA
RYRQKKGAVSTIQARWRVSMAVTRYRRSVDAAVVIQARVRGAIAKWKTNA
AIAIQRRLRAAKAEAAASTAIGAWWRSVQGVDRFRRARKGVLALQSIYRG
GCARREWAGRWLALRRRFSAHTAATRIQAIARGTAVRRTAGRRIAVARCK
IVEAAERARADPSQILGVKVKDALWDLEHSTRLTAIVRACIALELTSRYS
GKVCCQVMAESRCPEVMYDLVHGLNRSPRTREFLYTSLRPSSTSHSAGMG
CHS*
back to top

mRNA from alignment at F-serratus_M_contig1340:161261..173889+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1340.2545.1 ID=mRNA_F-serratus_M_contig1340.2545.1|Name=mRNA_F-serratus_M_contig1340.2545.1|organism=Fucus serratus male|type=mRNA|length=12629bp|location=Sequence derived from alignment at F-serratus_M_contig1340:161261..173889+ (Fucus serratus male)
CTCGGCGGTCACATACATTCAGACCTGGTGGCGGGGTGCCGCCGATGTAG
CGCGCTACCGCCAGAAGCTCGGAGCCGTGGTTGTTATCCAGACCAGTGTT
AGAGGTGCCATAGCGGCCGCTAAATACCGTCGGACTATCTCCGCGGTGAC
ATACATCCAGACGTGGTGGCGGGGCGCAACCGATGTATCGCGCTACCGCC
AGGAGCTTCATGCCGTAGTAGTCATTCAGGCGGGTGTGCGCGGCTTCATA
GCGGGCGCTCGTTACCGTCGGGGTATCTCCGCGGTGACATACATCCAGAC
GTGGTGGCGGGGCGCAGCCGCTGTAGCGCGCTACCGCCTGAAGCTCGGAG
CTGTGGTTACTATACAGACTTATGTTAGAGGTGCCATGGCGTTGTCTCGC
TATCGCCGGACTGTAGAGGCCGCGGTAGTTGTCCAGTCTAGTGTACGCGG
GGCCATGGCGGCTGCTCGATATCGTCGTACCATATCTGCGATAATATGCA
CCCAGACCTGGTGGCGGGGTGAAGCAGCTTTAGCGCGGTACCGTCAGAAA
AAGGGGGCTGTGTCAACCATCCAGGCTCGCTGGAGAGTGTCCATGGCCGT
GACTCGCTACCGCCGGAGCGTGGATGCCGCGGTAGTCATCCAGGCTAGAG
TGCGCGGCGCTATTGCGAAATGGAAGACCAACGCGGCGATAGCGATTCAG
AGGTAAGAGCGCACGTCAATAGTCGTGTTTTCGACTTGTCTCATACGTAG
GTACCAGGTACTATACAAGCTGGGCCGGCCAAGAAACTCACATTCGTTCG
TCATATCATCACAATCAGCCAATCACAGCGCGTTTGCATATTCCACTGTC
AATTTTAGTAGGCATCTTCTCTCAAATCAAAGTTTTCCCTCCGGATTTCC
GATAGGTTTTAGACTATTAATATCAAAAAAAGAAAGATGAAACCGTTTTT
TTGCGGTGAGATGGAGATTTTTTTTGTAAACAACTAGTAACATTTTAAAT
TTCGATTCCCCCCACGATTTCTTTGAATCAGAACCTGAAATTTTGATACG
CGCTTTGAATTGGTAAAACAAATGAGTTTCTTATTACATTTTTTTTTTTT
TTTTTTTTTCACCATTCCGCCGCATATTAAAGATTCTCTATTCCACTAAT
ATCGGGCTAACTTCCGCGAAAAAACATGTGCAGTAAGAAACTTATTCATT
TTGCCAATACAAAGCTCGTGTCAAAATTTCAGGTTCTGATTAAAAAAAAT
GTGGGGGGAATCCCCTCCAGCCATTCTGATTAGTTCTAGGCGGGCCAGCC
TGTATTTACAGAAGCCCTTCCAGGGTGACCATCAATGCAGGAGCCAGCGT
GCAGTCTGACGGTCCAACTCCCCCTGGATCTCGTCACACTAATGATCCCC
CTTTCCGTTCATCAATCCAACAAACCAAACCCATAGGAGGTTGCGAGCGG
CGAAGGCCGAAGCGGCAGCGTCTACCGCGATCGGTGCATGGTGGCGCTCC
GTACAAGGCGTCGACAGGTTCCGTCGGGCGCGCAAAGGCGTACTGGCTCT
CCAAAGCATCTATCGCGGGGGGTGTGCGCGGCGAGAATGGGCTGGGCGTT
GGCTCGCCCTCCGCCGTCGCTTTTCGGCGCACACGGCAGCGACAAGGATT
CAGGTGCGTTCGGGCTAGTAGGGCTCAAGAGTAATACGTTTTGTGGAGGA
TTTTCGGATGTGAATTGCTGTCATGCAGGAGATAACAAAAGAAGGAGCCC
ACGTAGGAGATGACTTCATTATGTCTCACTCGGGTTGTTGCAATTTTCAC
AATATGTGCTTGAAAATATAGCCACTGGAAGATATACTCGTATTTCAAAG
CGCATTATTAGCACTGTACCCAGGTTACACATACAAATATTCTTCCTTTT
AAGATGAAGCCTGCCGAGTAAACGTCGACTGAAGCACCGCTGCGTAACGG
TACCGAAATGGTTAGGCCGGCTCGAACCCATATATCTATAACTTTGGTAG
TGTCCAACTTCGCTGGGCCATGTCCCTGTTGCAGCTATGTAGGAAAAAAC
ACTCAATAAAAAACAAACGGTACGTACAATTTTGTTATTTTGTTTTATTT
TGGTAGAAAGAAAGTGTTGTAGCTCGGGGGTATAAGCGGGGACCCCCGGC
CACCAAACCTAAGTCATTCTACCGTAGTCTAGGACCGTAGATCTGGAGAT
CCTTTGATTCTAGCCGAATGGAAAAAACAGACTATTCTCAACGTTTTTCG
CCATAGCACGACCTGTGTGTGTAAGTTAGTGTTCGTTATCTGCAGGGATC
ATGTTGTATGGTCACACATATAGCAAGAGTATGGATCAACCAGGTAAGGT
TGCCAATCCTGCTCGTGGTCAGCTGAACAGGGAAAATAATATTCCCCTGT
CCGTGTTCGTGCCTGAGAATTTGGTCTCGCGAGACGGTTTCGGCCGTCCC
GTCCCGCGTCAGCCTGCTCATCTCCATACTCAGGCTGAATCTGGTGCTTA
CTTACGGGATTCCTCCCGAGTTCCGCGGCGGCGTCCATATATTTATATTA
AACCGCCATACGCCATCGTGTCAGTCCCGAGTTTATCGGGTCACGCAATT
GCGTACCGATGGCGTTCACTGCCGAGAGTCCGCCGGCATAGGGCGAGTAA
ACCTCAAAGGTAGTTCCGAACGAGGGTTGCCTTAGCAGGTCACCATGGAC
CAATTAATCTACGCCTCTCTTTCCCACAACCACTATTGGTATGAAGTGGG
CATGTTGAAAGTAACGGCGATATGTCAACCGTCAGCACGGTATTTGCAGC
TTAGATCTATCTGGTCAGCTTGCGTCAGAATCCAACCTCGAGCATGTCCA
GATTTTGCGGTGAAACGTTGCATCGCATAGCATCGAGACCACTCCTGCCC
TCCTAATAATAGAGCTTTTGTAATTGGTTCGCTTTTGCTACAAACTCTTG
CTGCCCTAGAGTGAGGGCACGCGGCGCTATAGCTCGTAAGACTTTATCGA
ATACCTTACACTGATGCCCGCAACAGCTCCAGTCACACCCGAGGCCGCCG
CTGGCCTTGGGACTTTCCGGACTGTGAAGTAAACGGCTAGCTTTTTTCAC
TGCATTGGAGGGCTGAGGCGTCAAAGTGACCTCTCCTGTCAAGAGGTTTG
AGGTCCGACGAAGAGTAGGTCAACAGTTCCCCCCGTCATCTCCGTTGGCT
CTGCAGTTTAGGGTTGAGGTGCCAAAGCGGCCTTTGTGGCCCAGGTTTAG
AGTCCGGGGAGAGCGGCCGACGGTGACTCGGTTTACCCTTCCCATCGATA
TCCCCGTGCGCTTCCGTATTATCGCGTTACATGATGACTGTTATCAATCA
TTATAGCACTACCAGGTACTTTTTTACTGCAGCTGTTTGTTGTTACCGTT
TGTATGGCACCGTGCTTTTCCCTTCTTCTCGATTATGGCCTCAACACCCT
ATCTGTTTTTTAAAGGAAGACATGAGCTCACCTAAACCTTCTAAGCATCC
GCCCTAGGGCGAAAAAATGTCAAAACGTTTAGGTGGAATCATAGGCTGCA
AAGACAAAACCTCTTCATGGTGTTTAAACGGGTTCCCCTATGATGGTAGT
AACGATGAGTCAACAGTATTATATCGGGGAGAAACCCACCGTTATACTGG
ACCCAGAGCCAAAACCAAGGAACACCACTATTAATACCAGTAGTCGATAT
ATATAATACCAGTACAGTATATTTTGACTTGGAGTTCAGGACTACAGTAA
TATGGTCATCGAAAGAGAAAATCAAGGAACATAGCTGATCTTTGTACATA
TGTACATATAGATGAGTTCATTGTTGTTATAGGTATTTCGGTGAAGGGAA
GTCTACAAGTCATAGTCTAGATGTAAAAGACCTCCAAATATAATAGGAAA
ATTGATACCATTGGTGATAGAAGGAGTAAGGTGTATGCTACATTAATAGT
GGAAAACCCTAATACATTTTGGGAATGCGGGAGAAGTAAGTTATGTATGT
ATTATAGTATGGTAACACATACCAGGTATAGCAAGAGTAGGAATCAACTG
GATAAGGTTGCCAATCCTGCTCGTGGTCAGGTGAACAGGGAAGATGTTTT
TCCATGTCCCCGTTCGCGCCCGAGAAGTTGGTCTCGCGAGACGGGTTCGA
CAGTCCCGTCCCGCGGCAGCCTGCTCATCTCCGTACTCAGGAGAGACGAA
GCGGATGACCAGGCAGATATCTGCCGGGATAAAAACTCTGGAACACCAGA
GCAAAAACAAAGGAATACCCTGAGTCTAGATATACAGTATATTTTGTTCA
AGAGTTCAGAGCTACAGCAGTAATGTGGTTATCGAGGAGGCAAAGTTGAG
GAACATAGCTGGTCTTAGTATATACCAGTATGTGGATCATTATTGTTATT
TTGATGAAGGAAATCTATAAGTCATAGACGCGAAAGATCTCACACTGACA
ACAGGTCCATAGAAACTGATACTATATAAAATTATGAAAGCAGGAGTAAG
GAGTGTGCTACCTTAAAAGAAGATACATCCTGTGAAAATGGGAGAAGTAA
GCTATATAACCTCGTACTCTCTCCCTCCGAAAACTGGTTTCGGGGTATGA
GTGTGGGAGGGTCTTTCCGGCAGGTGTAGGGCCGGGTTCACCCTCGAGAG
ATGCAGCCAACTGGCTGCCTTCGCGATTCGGCCTGTCGGTTGAGACGCGG
CGGCGGTATGATTGGCTGAGGATGGTGTTACCAGGTGTGCGCCTCTTCCG
AGCTCCAATTTGGTGCCCTTTGGGAGGGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGATTCCCACATTCAGCGTATTGTCCTTGGAACTGAAGAAACTA
CGGTGACACAACAAGTCAGCTATAGACCTATCAAATGTCAATCCCGCTTG
TGGTCACAAAGAGGTGCCAAGGTCGACGGGTCACATCATGATGACAACCC
ACTACTCAGACCAACAGAGATCCAAATCGTGAAAAAAAGTTATGCGACTC
TACAAGCAATGGCACCGACCAATATCAAAACGGTTCATCGAACCTCCTTA
CTCGATATCGAGGGCAACCTCGATCGACTCGGATGTTGTCGCCTACCCAC
GACCAACGTTTACAGCAACAAACCGAATAAGTTACGCTCCAACCAGTTTT
AATCAACAAGTCCAAGTTTCTCAAGGCACACAGTCGTACAGAAATAAGGA
AAACTGACATACCGCAAGTCCAGGGTGGTGGAGGGCTTGAACTGGTGAAG
CCGGCGCGCGAGCCAGCATCCAGCCGTCCAAAGCCCTGTGCATCCCTGAA
GAAGCCTCACGAATCTTGCCCGTCCGTCGACTTCACCAGCTCAAGGCCTC
CACCACCCTGGACTTCGATATGTTAATTTTCCTTATTTTTGTACGATGTG
TGGCCTTGAAAAACTTGGACTTGTTGGATCAAAACTGATTGATTGGAGCG
TGATTTGTCCACTTTGCTGTTGATAACGCTGGTCGTGGGTAGGCGGCAGC
AATCCGAGTCGATCGAGGTCGCTCTCGATATGGAGTAAGAAGGTTCAATG
AACCGTTTTGACATTGGTAGGTACCATTACTTGTAGAGTCGCATAACATT
TTGTCGCGATTTGAATCCCTCTTGTTCTGAGTAGTGGATTGTCACCATAA
TGTGACTCATTGCCCTTAGTACCTCTTTGTGACCACAAGCGGGATTGACA
TTTGATAGGTCATAGTCTATGGCTGACTTGTTGTGTCACCGTAGTTTCTT
CAGTTGCAAGGACAATACGCTGAATGTGTGCATCAACAACAGCAAACAGC
AACTGTACTATTAATAGATACGATAACAGTGGTGGAAAATACACTATGAA
ATAGTATAGAGCCTACTGTACTACAATAATAGTGGTAGATGCATCGGGTT
TCGGTTAATAATTTAAGGACAGACGAAGAGAATGGCCAGGCAGATACTGT
ATCTTCAATACATTACTGTATATGGATAGGACGACGACAGTACAACATTT
CGCGGCTTTGACATCACGACACACTTCCAGATTTCTCTTCCACGCCCTAT
GAAGGCCTGTGTACCATCATCTATAGCCCAGGGATCTCTCTCTCTCTATA
TATACACCAGATATGTAAACATGAAAATTACTACCTGTACAAGAACAACT
ACCGAAAGAAAATATCTTTGGGGCGATCTATGTATCGTCAAATGGAGATT
CCTCGTGGGAGCAAGGCTTTGTTTCCAACTGTTTATTTCTTTTCTTTTCC
CCCATCTATCCAGGCGATTGCGCGTGGCACGGCGGTACGACGCACAGCAG
GCCGTAGGATAGCGGTTGCCAGATGCAAGATTGTCGAAGCAGCTGAAAGA
GCTCGTGCAGACCCATCGCAAATCCTCGGAGTGAAGTGAGTCCCCAAAGC
GGTATCCTTATCAAAGACGACCGACATGATAGCAGCACAGTTAGTGGTAT
AATACTGTAGTAAATATAGTAAAACGTTCCACTAACAACCTGAGCCGTCT
CACGAAATGACATTATGATGTAAGTGATACGTAAAATAAATGCTGTGCAG
CTTATCACCCCCCGCAGCCTGAAATATAGTATATAGTATATAGTATATAG
TATAGTATATACAGTCACGGTCGTTATTAATAGTGTATGTATGGTTATCG
TATAAAGCAGAGTATGGATCAACCTGGTACGGTTGCCAATCCTGCTCTTG
GTCAGCTAAACAAGGTAAATACATATTTTTCTGTCCCCGTTCGCACCTGA
GAATTTGGCCTCGCGAGACGGGTTCAGCCGTCCCGTCCCGCGTCAGCCTG
CTCATCTCCATACTCAGGCTGAATCCGGTGCTTACTTAATGAATTCCTCC
AGAGTTTCGCGGCGGCGTCCATTTATTTATTTGAACCGCCATATGCCAAC
GGGTCAGTCCCGAGTTCATCGGGTCACGCAATTGCGTACCGATGGCGTTC
ACTGCCGAGAGCCCGACGGTACAGGGCCAGTAAACCTCAAGGTAGTTCCA
AAGGGGCGCTGCCTTGGAAGGTCACCATGGACCAAGTAATATTCGCTTCT
CTTTCCCACACCCTCTATTGGTATGAAGTGGGCATGTTGAAAGTACCGGC
GGCATCGAAGGGGTAAATGAAGTACCGTACATAACTGATACACTATGGGT
AAAACACGACACAGGAATTTGATAAACGCGTTTCCCCGCGATATGGTTGC
GCCTCCTCGTTTGTCCTTGTCCAGGGTGAAGGACGCGCTGTGGGACTTGG
AGCACAGCACGCGACTGACGGCAATCGTCCGTGCTTGCATCGCTCTCGGT
GAGGAGTGGAGAACGACCCTGTATTGACGTAAAAAATAACCATGAAAGCG
AGACAAAATGTGTTCGCAGCAGCATCGTTATTATTATCCCCGACCCTCAA
ACTCAAACCCCTAAAGGAAGCGTTCGCACCTCAAGATGGTGGATAAACGG
AGTCTGATGATGAGAGTGGTGCACGGTGCGATGTCTTGTGTGGTAGATAG
AGGCCTTCGAGAACGGTCTGGAAGGAGATAAAACGAAGTATCTATTCTTT
CGTTGATATTCCAAGGGTAACGAGTGTCCTCGCTTAAGAGCATTAGCCCA
TTGGAAAATAGATGGGGACGAAGTGGGAAAAATGGTAATATACATACTTG
TATTACATTACCTAGATCAAGTCGTAAACGTCTACGAAGAATACTGGAAC
TCCCCATATGACTTATTAACTACGACTATCTACTAGACAAGACAACCTAG
AAACTATGCTACACTCATATGTTAGAACACCCTCCAGTAATTGACTAGAA
GTAGTATGGAGCGTTCTTTTCACCTTTTCACGGCAATATTTACTTTGAAG
GGAAAGTACTGCGAAATGGATTCGATGTCATGACGAGCTCGCAATCACTT
ATCGATCGACTCTACGGCTTGAATTACCTTTATTTTTTCGGTTTTCCGGT
CGCCCCGGTAGCTCAGAGGTAACCTCGTAACCTTCTGACACGTTGGGATG
TGAGTTCGAATCCCGGTAAACGGATTTTTTTCTCGCTAAAAACAAAAACA
AAAAAAATGCCCAACAAGTGGAAAATGATTAAATCGTTAGTACAAAAAAT
TCAACATCACGGTCGACGAGGGAAAGGAACGGCAGGATCCTTCTCGCGAG
AAAAATTAAGGCACGCACCGCGGAAGGAAGGTGGATGGGAAGTCCTGTAT
GACCTTCCTCCTGTGTGACCCCGGCTAATACGCCCAACGAACTTGATGTC
CAGAATGAATGGGAAGAAAACACACACACACACAGGCCAGAATACGGTAC
TCTCTAAAATGCCCACTTCATACCAATAGTGGGTGTGGGAAAGAGAGGCC
AATATTAATTGGTTCATGGTGACCTGCCAAGGCAGCACTCGTTCGGAACT
ACCTTGAGGTTTACTGGCCCCGTGCCAGCGGACTCTCGGCAGTGAACGCC
GTCGGTACGCAATTGCGTGATCCGATAAACTCGGGACTAACCCGATGGCT
CATGGCGGTTATAAATGAATAACTGGACGCCGCCGCGGAACTCGGGAGGA
ATCCCGTAAGTAAGTAAGAACCATATTCAGCCTGAGTAAGGAGATGAGCA
GGATGACGCGGTACGGGACTGCCGAACCCGTCTCGCGAGACCAAATTCTC
AGGCACGAACGCGGACAGGAAATTTTTCATTTTCCCTGTTCAGCTGACAA
CGTGCAGGACCGGCAACCTTACCCGGTTGATCCATACAGTACTCTGCTAT
ATGTGTGACCATACGTGCATACATCAACTATTAATATAGTACAGTACAGC
TCTCGCGTCGCGCGTAACCGAACGAGTTTCATTACGCACCTTCCACTCAA
CCTCGACCAATAATACATTTGACTCATTACACCTATCTCCTTCCCTGCTC
CTTAAGAGCTCACGTCGAGGTACTCTGGCAAGGTCTGCTGCCAGGTCATG
GCGGAGTCTAGGTGTCCTGAGGTTATGTACGATCTCGTCCATGGCCTGAA
CCGGAGCCCCCGCACCAGAGAATTCTTGTGTGAGTTATTCGACTATTAAT
TTTTATGGCTTGGATTCTGCGCCGGTACGTGTACGCGCGACGCTCGTAAA
ATAAAACGGTGTTGATATTGCGGGGTGGCACTGACTCGCAGATACATGCT
GTTTGCGCTCAGAAGTATCGCGTCGCTGTTTGAACGGCATTCCCTTGGCC
ACTCATCCACCGGTGTGATTTTTTCTCGGCAGATACATCCTTAAGACCTT
CATCAACATCGCACAGCGCGGGGATGGGCTGCCACAGCTGATCGCGGCAC
CCCCCGCAGCCATCGCGACGTTGATGAACCTTCTACAGGTAGGTGATGGA
TGAAACTCCAACACAATAATGTCTATTAGCAGGTGTTAAACTCCAAACCA
AACGCTATTGTACCGGCACGTAGTTACGTACGTAGCACGTTACTCCACTC
AGAGGATGATAAAATGAGCGAGAAAGGCATTCATTATTATTCGGAAATTG
CGGCGATAAACCCGTTGCGGCGATATTTTTCTAAACCTTGTTTGTAATCG
ATCATCGATGTCGAAAGCACCTAGACTAGCGGCGAGTTTCGATCCTACAG
TAGTAAGAGTTAACACGTCCACTTTCACAGTCTCAATTTCATTGACTTAC
AATACAGTATTATTTACTTATAGTAATACCTCTTTGGGTCGTGGTCTGAC
ATTGTTCCCTTCCCGTCAGATGTACCGCGAACGTCAAGAGATATTCCTGC
CTACGTTGCGACTGGTGCAGCAGCTTGCGGCGGCACACCAGCCAACCAAG
GTGTGTGTGTGTGTGTGTGTGTATTTATTAAATTGTACATGACTGCGCAA
TCCGGCCCTGTCATCCTAGTCATTCTATGCCACCCGCATTGATCCTCCCG
AGGGGATCGATGATAATGTGTGTGTGTGTGTATGTGTGTGTTTGTGTATT
TATTAAATCGCAATGATGCCAAGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTATTTATTAAATTGCACATAACCACGCAATCCGGCCCTGTCATCCTT
ATTAAATTGCACATAACCACGCAATCCGGCCCCTGTCATCCTAGTCATTC
TATGCCACTCGCATTGATGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGT
ATTTATTAAATTGCACATAACCACGCAATCCGGCCCTGTCATCCTAGTCA
TTCTATGCCACTCGCATTGATCCTCCCGAGGGGGATCAATGATACTTATT
ACGAAAACCTCTAATCAGACGCGACAAAGGGGACACGCTCTCTCTACTTG
TACAATTTCCACTTAAACTCAGAGTTCCTTGTGCTCCCCCCCCTGCTTCC
TTATTAATCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTATTA
AATTGCACATAACCACGCAATCCGGCCCTGTCATCCTTGTCATTCTATGC
CACTCGCATTGATCCTCCCGAGGGGGATCAATGATACTTATTACGAAAAC
CTCTAATCAGACGCGACAAAGGGGACACGCTCTCTCTACTTGTACAATTC
TTACTTAAACTCAGAGTTCCTTGTGCTCCCCCCCTGCTTCCTTATCAATC
TCTACAATATTTGAGTTGGCAGCTACTGGACCGACACTTCCTTTTCTACA
TCTCTTCCTCGTTCCACCAAAGTCTCCCCCGTTTCCCCCTTGGCGTCTAC
AACTATTTAGCGGTTTCTTGTGCTTCTTAGCCTCTCTTTCGCCATCCCCG
ACCCTACCCTCGTTCCCGTTCCCTTCGTCCCCGTTCCCATCTTCGCTACT
GACCTTAGGTCCATCCCCGTTCCCATCCGGTGTTCGTCGATGGGTCTCTA
CCTCCGTCCCCATCCCGCCTTTTCCCCGCTGCCGTCCCCGTTCCCATCCT
GCGCTCCTTCGTTCACCCCCACCCCAGTTTCCACTCTCGCTCTGTCCCCG
TCCCCATGACCGTTTGCATCCCCATTCCCATCCCCAACCCCGCTACCGTC
TCCATTCCCGCCCCCGACTCGAATCTCGCCCCCAACGCCGATTGCTCCTT
CCTGACCCTCGGTTACCCCCGGTACGGTGCGCTTGTACAGACACCGGACC
TTGCGAACGGAACTGTCGAGTACTCGCAAGTGCCACGCCCTGTCTGCAGA
AATGGTGACGCGTGCGGAATGAAAGTGCCTGCTGTAAAACAAAAGAGAAT
CGCCGCCGAAGGCGTGCTACTTCCGTCCCTTCCGCCAGATGTTGGGACTC
GTTGGAGTGTGTCTCCGACCTATGCTGTACCCGTCTGATGGCGAGCTCCT
TGATGAGGGCATGCAAGTCTGAGCCAACCTCACCACATGTCGACATAGCG
AGAGGAAGGAGGAGTAGGTAGCGGGGAACGAGCCCCGATACTTGTTATTC
TTCCGCTCGACAGCGTCGGCGAGGTGTTTTCCTACGTGGCGTGCTGCGTT
CCCGAGATTGGAGCCGACGCAAGGGTTGACGATGGTGATGTCGAGGAGAA
GTCCCTTATTCTTGAGTCGAGGGTGGTTGTTGAAGAGTGCCCCTGCCTCC
GTTGTGATGTCCATACGTAGAGGGTTCAGTCTACTGTTTTCCCCGCTAGC
TCTCTCGCGGAAGGGCCATGTGTCTTCGACAACAAACTGAACTTTGCTCT
CGCGAAGGGATCGAGCGAGTGCCTGGTGGAGCACCCGATTGTGAGTGAGA
GAGCTCCATCCCGTCTTCGTGCAAGATATGGCGTGGAGGCGTGTGGTTTC
TTGCCGGCAACCATTGCCATGACACATCCCACCGACAAGTTCCGCCGCGT
CATGCGACCCCAGGCTCCTGCCTAAGGTTTCCCTCCACAGGGGGCCCTCC
ATCGTGTCTTCTTGCGAACCCCCCAGGCACTCCACAAATGCCATGGCGCC
CTTCTCCCGCGCTCCCCTGAACCTTACCAAAGCTCTTTTCATTGGGACAC
TTTCCGAGGTTTGGAGGTGTGTGTGTGTGTGTGTGAATTTATGTATTTGT
TAAATTGCACATAACCGCGCAATCCGACCCTATCATCCTAGTCATTCTAT
GCCACTCGCATTGATCCTCCCAAGGGTGGATCAATGATATCACGAAAACC
TCTGATCAGACGCGACTGTGTGTGTGTGTGTGTGGCTTGACCTTTTTCAT
GATCTCGTATTGCGAGCAATTTTAACCCATAGTATTAAAGCTCTAATAAC
TCTACACATTTTCCCGAAGACTAGTTAGGCTTGATGCGGAAGAAACCACC
TACTGTAGAGAGCGAGAACTTGGTAACATGATCACATGTCACATACCCCG
ATGTGAACTCTCCGTTGTGTAGAGTCTAAAGCACAAGCAGGTGGCCTGCC
AGCATTCGTTTGAAATCGCCCACACCTGTTCTCCCCCCCCCCTGTTCATA
TGCCACAGGATGAGTGCAACGAGTCGAAATACTTGCAGCGCCTGGATAGC
CTTCAGAAAATACTGACGCGCAAGGTGGCGGCAGAGAGGAAGAGCGAAGG
CATGGCGAGGGCAAGCATCGGTGCAGGGCGTTCTGCGAGATCATTGAAGG
CTGTTAATCTTCTTCTGAGAGAGTTATCGAAGGAATAAGACCGTTAGGCT
ACTTCTTATGTGCTCCAAAATTGTTGTCC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1340:161261..173889+

>mRNA_F-serratus_M_contig1340.2545.1 ID=mRNA_F-serratus_M_contig1340.2545.1|Name=mRNA_F-serratus_M_contig1340.2545.1|organism=Fucus serratus male|type=CDS|length=1824bp|location=Sequence derived from alignment at F-serratus_M_contig1340:161261..173889+ (Fucus serratus male)
ATGGCGTTGTCTCGCTATCGCCGGACTGTAGAGGCCGCGGTAGTTGTCCA
GTCTAGTGTACGCGGGGCCATGGCGGCTGCTCGATATCGTCGTACCATAT
CTGCGATAATATGCACCCAGACCTGGTGGCGGGGTGAAGCAGCTTTAGCG
CGGTACCGTCAGAAAAAGGGGGCTGTGTCAACCATCCAGGCTCGCTGGAG
AGTGTCCATGGCCGTGACTCGCTACCGCCGGAGCGTGGATGCCGCGGTAG
TCATCCAGGCTAGAGTGCGCGGCGCTATTGCGAAATGGAAGACCAACGCG
GCGATAGCGATTCAGAGATGGCGTTGTCTCGCTATCGCCGGACTGTAGAG
GCCGCGGTAGTTGTCCAGTCTAGTGTACGCGGGGCCATGGCGGCTGCTCG
ATATCGTCGTACCATATCTGCGATAATATGCACCCAGACCTGGTGGCGGG
GTGAAGCAGCTTTAGCGCGGTACCGTCAGAAAAAGGGGGCTGTGTCAACC
ATCCAGGCTCGCTGGAGAGTGTCCATGGCCGTGACTCGCTACCGCCGGAG
CGTGGATGCCGCGGTAGTCATCCAGGCTAGAGTGCGCGGCGCTATTGCGA
AATGGAAGACCAACGCGGCGATAGCGATTCAGAGGAGGTTGCGAGCGGCG
AAGGCCGAAGCGGCAGCGTCTACCGCGATCGGTGCATGGTGGCGCTCCGT
ACAAGGCGTCGACAGGTTCCGTCGGGCGCGCAAAGGCGTACTGGCTCTCC
AAAGCATCTATCGCGGGGGGTGTGCGCGGCGAGAATGGGCTGGGCGTTGG
CTCGCCCTCCGCCGTCGCTTTTCGGCGCACACGGCAGCGACAAGGATTCA
GGAGGTTGCGAGCGGCGAAGGCCGAAGCGGCAGCGTCTACCGCGATCGGT
GCATGGTGGCGCTCCGTACAAGGCGTCGACAGGTTCCGTCGGGCGCGCAA
AGGCGTACTGGCTCTCCAAAGCATCTATCGCGGGGGGTGTGCGCGGCGAG
AATGGGCTGGGCGTTGGCTCGCCCTCCGCCGTCGCTTTTCGGCGCACACG
GCAGCGACAAGGATTCAGGCGATTGCGCGTGGCACGGCGGTACGACGCAC
AGCAGGCCGTAGGATAGCGGTTGCCAGATGCAAGATTGTCGAAGCAGCTG
AAAGAGCTCGTGCAGACCCATCGCAAATCCTCGGAGTGAAGCGATTGCGC
GTGGCACGGCGGTACGACGCACAGCAGGCCGTAGGATAGCGGTTGCCAGA
TGCAAGATTGTCGAAGCAGCTGAAAGAGCTCGTGCAGACCCATCGCAAAT
CCTCGGAGTGAAGGTGAAGGACGCGCTGTGGGACTTGGAGCACAGCACGC
GACTGACGGCAATCGTCCGTGCTTGCATCGCTCTCGGGTGAAGGACGCGC
TGTGGGACTTGGAGCACAGCACGCGACTGACGGCAATCGTCCGTGCTTGC
ATCGCTCTCGAGCTCACGTCGAGGTACTCTGGCAAGGTCTGCTGCCAGGT
CATGGCGGAGTCTAGGTGTCCTGAGGTTATGTACGATCTCGTCCATGGCC
TGAACCGGAGCCCCCGCACCAGAGAATTCTTGTAGCTCACGTCGAGGTAC
TCTGGCAAGGTCTGCTGCCAGGTCATGGCGGAGTCTAGGTGTCCTGAGGT
TATGTACGATCTCGTCCATGGCCTGAACCGGAGCCCCCGCACCAGAGAAT
TCTTGTATACATCCTTAAGACCTTCATCAACATCGCACAGCGCGGGGATG
GGCTGCCACAGCTGAATACATCCTTAAGACCTTCATCAACATCGCACAGC
GCGGGGATGGGCTGCCACAGCTGA
back to top