prot_F-serratus_M_contig134.2520.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig134.2520.1
Unique Nameprot_F-serratus_M_contig134.2520.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length643
Homology
BLAST of mRNA_F-serratus_M_contig134.2520.1 vs. uniprot
Match: A0A6H5L8U0_9PHAE (KH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8U0_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 3.560e-51
Identity = 223/663 (33.63%), Postives = 274/663 (41.33%), Query Frame = 0
Query:    1 MVTMAGTFNAVQLAITHILSHAGAAGPNANPVMGPCGGD--CLANAVRILIPNVKAGGLIGRSGFNIKTIRERSGACITLSTRAFVLYTAHGPLQSPQAAAPNANPIRGPDGRISA------GASPRFDAEDENDSPDPEGAPERACRRDGLSSDAAD-------GTAKSTPIVPDRILKAEGTFDACLRAHHLVVWKLMDVRPSSAQAPLSE-------------PDERVP-----VPTAT--------------TFAGAR---------VGSGV--------------RDQRISSPSSTNMFS----DESFR-GGGRNRGRVAASAKTAV-----KFSKESPSPAPFASEHL-------LPFRRSWGFGGPALVPMTPS----------------LSPAVITPESAGRKGSETNTPPQASSPPSPLAESPRGSTNGSVENFG----------------DSTNDARAMFVRDPTFSPVIEPNGVELAGAGAGGGEVVPALDVGGAASAADHALEYSGGVAIGVNGDDGELPPCLAGVFGSFVRG------------------CSIIGR------------ASPPARSPSTMTGIDVEVQRSAFSLLDMHDLDDIKNLSGAGIFAPDSPESFSNLSDEALADAFVTPGTARRG-PPAEGLDLA 513
            MVT AGTFN+VQLA THILSHAGA GP+A+PVMG  GGD  C+AN+ R+LIPNVKAGGLIGR G  IK IRE+SGA I +S+ AF  +  HGPL +P    P   P  G             G  P  D                           A+       G     P++ DR++ A G+FDACLRAHHLV  KLMDVRPS    P                P  R       +PT                 FAGA          VG GV                 ++S P    +F+    DE+ R G GR   R A +          K +  S SPA   SEH        +   RSW                             +   +++ ES+G + S T+TP   SS  S   +SPRGS  GSVE+FG                D     R                                 L  GG            GGV+     DDGELP CL G+  SF+ G                     +G             A+PP RSPST+TGI++EV RSAF+ L    LDDIK+LSGAGI AP+SPE + +LSDEALA       +A RG  P +G+ LA
Sbjct:    1 MVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISSHAFHFHPVHGPLPAPPHHTPT--PQAGXXXXXXXXXXXIHGGLPHGDGGPXXXXXXXXXXXXXXXXXXXXXXXPAEREGGPPAGIPLPLPMLMDRVMTAMGSFDACLRAHHLVASKLMDVRPSPVPIPSGPXXXXSHGGPPSHGPSARAQSAPMMIPTXXXXXXXXXXXXXXXXVFAGAAARGNRHGHGVGGGVPHGPRAGGGDGAHPHHSQLSHPHPHRVFAANLHDEAPRMGAGRGGPRTATAXXXXXXXXXXKLATASTSPASSMSEHSYHRQPWDVEDHRSWSAAXXXXXXXXXXXXXXXXXXXXXXXXXVMCGELLSRESSGGRVSGTSTP-LLSSSVSVSKDSPRGSA-GSVEDFGTPATIGAADMNGGGGMDRQLLTRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVLHRGGMLGNMSGNXXXXGGVS-----DDGELPSCLVGILDSFLGGGGKSYVSDGNGIRSGSGNXGSVGNSNANEKNGNNNGAAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYCHLSDEALAAMGAVYSSAARGNAPCDGVGLA 654          
BLAST of mRNA_F-serratus_M_contig134.2520.1 vs. uniprot
Match: D8LKQ4_ECTSI (Poly(Rc) binding protien (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ4_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 5.560e-28
Identity = 66/97 (68.04%), Postives = 77/97 (79.38%), Query Frame = 0
Query:    1 MVTMAGTFNAVQLAITHILSHAGAAGPNANPVMGPCGGD--CLANAVRILIPNVKAGGLIGRSGFNIKTIRERSGACITLSTRAFVLYTAHGPLQSP 95
            MVT AGTFN+VQLA THILSHAGA GP+A+PVMG  GGD  C+AN+ R+LIPNVKAGGLIGR G  IK IRE+SGA I +S+ AF  +  HGPL +P
Sbjct:  151 MVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISSHAFHFHPVHGPLPAP 247          
BLAST of mRNA_F-serratus_M_contig134.2520.1 vs. uniprot
Match: D8LKQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ3_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 1.530e-17
Identity = 93/303 (30.69%), Postives = 120/303 (39.60%), Query Frame = 0
Query:  408 DDGELPPCLAGVFGSFVRG----------------------------CSIIGRASPPARSPSTMTGIDVEVQRSAFSLLDMHDLDDIKNLSGAGIFAPDSPESFSNLSDEALADAFVTPGTARRG-PPAEGLDLA-----------------------------------------------DPKPAANKTTDIGADNSNSTSSLTGSVEGVGEEAHELYDMSCTSLNHGYPFGGTVPELEENTVGLFRRSPAFGNKGVVSEGGRTQKSPLMKMVRITGTVEEVQLAEYLIRVRTADLYNAVA 634
            DDGELP CL G+  SF+ G                                  A+PP RSPST+TGI++EV RSAF+ L    LDDIK+LSGAGI AP+SPE + +LSDEA A       +A RG  P +G+ LA                                                P         +  + S+  ++  G++  V      L  +  T+ +      G  P L  + VG      A          G       +K V+ITGT EEVQLAEYLIRV T     A A
Sbjct:  123 DDGELPSCLVGILDSFLGGGGKSYVSDGNSIRSGSGGXXXXXXXXXXXXXXXXAAPPLRSPSTITGIEMEVGRSAFARLGERGLDDIKDLSGAGISAPESPEGYYHLSDEAAAAMGAVYSSAARGNAPCDGVGLAAANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSSPFEGFRLREGVRGNMSDGAATTPGAIAAVTGGVSRL--VLDTTNSXXXXXNGVSPSLA-SAVGHVSGGLAXXXXXXXXTAGPNS----LKTVKITGTAEEVQLAEYLIRVSTTGGNMAAA 418          
BLAST of mRNA_F-serratus_M_contig134.2520.1 vs. uniprot
Match: A0A836CIH4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH4_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.930e-5
Identity = 61/204 (29.90%), Postives = 81/204 (39.71%), Query Frame = 0
Query:    1 MVTMAGTFNAVQLAITHILSHAGAAGPNANPVMGPC--------GGDCLA----------NAVRILIPNVKAGGLIGRSGFNIKTIRERSGACITLSTRAFVLYTAHGPLQSPQAAAPNANPIRGPDGRISAGASPRFDAEDENDSPDPEGAPERACRRDGLSSDAADGTAKSTPIVPDRILKAEGTFDACLRAHHLVVWKLMD 186
            +V + G+F AV  A+  IL+HA     N  P+ G           G+  A          +A R+LIPN KAG LIGR G  IK IR+ SGA I +S+         G L +P   A  A P                        P P                     A +  +  DR++   G F AC+RAHHL+V  +MD
Sbjct:  162 LVHLVGSFGAVVAALGAILAHAETPS-NGEPLPGLAQLVAGGLLSGEAAAAVDAAITVPPSAFRMLIPNAKAGALIGRGGTTIKAIRDASGARIEISSHLA------GNLPAPPGGAGAAGP------------------------PTP--------------------AAIAVALSADRVVSVSGPFAACVRAHHLIVASMMD 314          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig134.2520.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L8U0_9PHAE3.560e-5133.63KH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LKQ4_ECTSI5.560e-2868.04Poly(Rc) binding protien (Partial) (Fragment) n=1 ... [more]
D8LKQ3_ECTSI1.530e-1730.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CIH4_9STRA2.930e-529.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 45..78
e-value: 2.1E-6
score: 27.4
NoneNo IPR availablePANTHERPTHR10288KH DOMAIN CONTAINING RNA BINDING PROTEINcoord: 2..79
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 42..78
score: 11.133
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.474
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 45..187

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig134contigF-serratus_M_contig134:131189..133573 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig134.2520.1mRNA_F-serratus_M_contig134.2520.1Fucus serratus malemRNAF-serratus_M_contig134 125215..133781 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig134.2520.1 ID=prot_F-serratus_M_contig134.2520.1|Name=mRNA_F-serratus_M_contig134.2520.1|organism=Fucus serratus male|type=polypeptide|length=643bp
MVTMAGTFNAVQLAITHILSHAGAAGPNANPVMGPCGGDCLANAVRILIP
NVKAGGLIGRSGFNIKTIRERSGACITLSTRAFVLYTAHGPLQSPQAAAP
NANPIRGPDGRISAGASPRFDAEDENDSPDPEGAPERACRRDGLSSDAAD
GTAKSTPIVPDRILKAEGTFDACLRAHHLVVWKLMDVRPSSAQAPLSEPD
ERVPVPTATTFAGARVGSGVRDQRISSPSSTNMFSDESFRGGGRNRGRVA
ASAKTAVKFSKESPSPAPFASEHLLPFRRSWGFGGPALVPMTPSLSPAVI
TPESAGRKGSETNTPPQASSPPSPLAESPRGSTNGSVENFGDSTNDARAM
FVRDPTFSPVIEPNGVELAGAGAGGGEVVPALDVGGAASAADHALEYSGG
VAIGVNGDDGELPPCLAGVFGSFVRGCSIIGRASPPARSPSTMTGIDVEV
QRSAFSLLDMHDLDDIKNLSGAGIFAPDSPESFSNLSDEALADAFVTPGT
ARRGPPAEGLDLADPKPAANKTTDIGADNSNSTSSLTGSVEGVGEEAHEL
YDMSCTSLNHGYPFGGTVPELEENTVGLFRRSPAFGNKGVVSEGGRTQKS
PLMKMVRITGTVEEVQLAEYLIRVRTADLYNAVACRQRTPPW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR036612KH_dom_type_1_sf