mRNA_F-serratus_M_contig134.2515.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig134.2515.1
Unique NamemRNA_F-serratus_M_contig134.2515.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig134.2515.1 vs. uniprot
Match: D7FJ29_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ29_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 1.580e-72
Identity = 171/204 (83.82%), Postives = 185/204 (90.69%), Query Frame = 1 
Query:  265 ARPRNFSSSSEYLKHRPVMNLHQERGHTMPSTFVTPSASVIGNVRIFDHSCVWYGATVRGDKNAVTIGAHVHVGDKAVINTVGRVDTGFSSEVSIESWVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRELSDEDVLAVEAEAERRSRLGELHADEFNPYGQAYLQVEQA 876
            AR  + + S EYL+HRPVMNLH+ERG TM +TFV P ASV+GNVRI DHSCVWYGA +RGDKN V IGAHVHVGDKAVINTVG VDTGFS+EV+IESWVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVR+LS+EDV  +EAEAERRS LGELHADEFNPYGQ Y+Q E+A
Sbjct:    4 ARVFSAAPSPEYLRHRPVMNLHEERGFTMSTTFVAPCASVVGNVRIIDHSCVWYGAVIRGDKNKVKIGAHVHVGDKAVINTVGHVDTGFSAEVAIESWVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRKLSEEDVAEIEAEAERRSALGELHADEFNPYGQGYVQAEEA 207
[Close]
BLAST of mRNA_F-serratus_M_contig134.2515.1 vs. uniprot
Match: A0A7S3GN43_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GN43_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.140e-27
Identity = 83/193 (43.01%), Postives = 114/193 (59.07%), Query Frame = 1 
Query:  298 YLKHRPVMNLHQERGHTMPSTFVTPSASVIGNVRIFDHSCVWYGATVRGDKNAVTIGAHVHVGDKAVINTVGRVDTGFSSEVSIESWVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRELSDEDVLAVEAEAERRSRLGELHADEFNPYGQAYLQVEQA 876
            + +HR VMNL+ +R       FV P+ASV+G+V +FD   +WYGA +RGDKN + +G   +V D+AVI+TV  ++TGF + V I   V                              XXXXXXXXXXXXXXXXXXXX N+LWAGNPA +VR+++DE+ + ++  AE  + +G  H +EF P+G  Y   E A
Sbjct:   36 FSRHRAVMNLYDKRPIIAAGGFVAPNASVVGDVLLFDEVSIWYGAVLRGDKNKIKVGRLTNVQDRAVISTVANLNTGFPANVEIGDSVTIGHGALITSATIGNRVLVGQGSIIQEGAEXXXXXXXXXXXXXXXXXXXXSNQLWAGNPAVYVRDVTDEESVGIKKSAEHYAEVGRTHGEEFLPFGTTYQAAEAA 228
[Close]
BLAST of mRNA_F-serratus_M_contig134.2515.1 vs. uniprot
Match: W7TW63_9STRA (Trimeric LpxA n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TW63_9STRA)

HSP 1 Score: 120 bits (300), Expect = 6.520e-27
Identity = 97/194 (50.00%), Postives = 122/194 (62.89%), Query Frame = 1 
Query:  304 KHRPVMNLHQERGHTMPSTFVTPSASVIGNVRIFDHSCVWYGATVRGDKNAVTIGAHVHVGDKAVINTVGRVDTGFSSEVSIESWVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRELSDEDVLAVEAEAERRSRLGELHADEFNPYGQAYLQVEQA*IS 885
            +HR V NL  +R     + FV+PSA+V+G V ++D   +WYGA +RGD+N+V IG   +V D AVI TV  +D+GF + V I + V                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ELW GNP KF+R+L DE+VLA  A AE    L + H +EF P+G AYL  E+  +S
Sbjct:   69 RHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVS 262
[Close]
BLAST of mRNA_F-serratus_M_contig134.2515.1 vs. uniprot
Match: A0A5A8CT95_CAFRO (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CT95_CAFRO)

HSP 1 Score: 113 bits (282), Expect = 8.370e-25
Identity = 82/192 (42.71%), Postives = 104/192 (54.17%), Query Frame = 1 
Query:  298 YLKHRPVMNLHQERGHTMPSTFVTPSASVIGNVRIFDHSCVWYGATVRGDKNAVTIGAHVHVGDKAVINTVGRVDTGFSSEVSIESWVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRELSDEDVLAVEAEAERRSRLGELHADEFNPYGQAYLQVEQ 873
            + +HRPVMNL  +   T PS FV P+A+V+GNV I   S VWYGA VRGD+  V IG + ++ D+AV+ T   V+   S    I S V                            XXXXXXXXXXXXXXX         +LWAGNPA+FVR L+ E++ A+E +AE  S L E HA EF P    +L  E+
Sbjct:   37 FARHRPVMNLFDKHPVTDPSVFVAPNATVVGNVTIAHKSNVWYGAVVRGDQARVEIGGYTNIQDRAVVTTAKEVEGQSSGVTKIGSHVTVCPGAVLRSCVVEGHNRIGAGAVVNDGXXXXXXXXXXXXXXXHPGRRIPGGQLWAGNPAEFVRNLTKEEMAALEIDAEAASSLAEEHAAEFLPTSAVHLDAEK 228
[Close]
BLAST of mRNA_F-serratus_M_contig134.2515.1 vs. uniprot
Match: K3WLJ5_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WLJ5_GLOUD)

HSP 1 Score: 109 bits (273), Expect = 1.600e-23
Identity = 80/197 (40.61%), Postives = 114/197 (57.87%), Query Frame = 1 
Query:  283 SSSSEYLKHRPVMNLHQERGHTMPSTFVTPSASVIGNVRIFDHSCVWYGATVRGDKNAVTIGAHVHVGDKAVINTVGRVDTGFSSEVSIESWVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRELSDEDVLAVEAEAERRSRLGELHADEFNPYGQAYLQVEQ 873
            S +  + +HR VMNL+++R       +V P+A+++G+V I + + VWY   +RGD N V IG   ++ D+ VI+T    + G S   SI + V                            XXXXXXXXXXXXXXXXXXXXXX  +LWAGNPAK+VR++SD++V  +  +A+    + + H+DEF PYG AYL  E+
Sbjct:   32 SFNERFSRHRQVMNLYEKRPVIAHDVWVAPNATIVGDVEICNDASVWYNVVIRGDLNQVRIGNRTNIQDRTVIHTASTTNAGLSPGASIGNDVTVGHGCILYSCTIENNSLIGMGSIILDGXXXXXXXXXXXXXXXXXXXXXXSGQLWAGNPAKYVRDISDDEVSDIVKQAKEYKSIADTHSDEFLPYGTAYLDAEK 228
[Close]
BLAST of mRNA_F-serratus_M_contig134.2515.1 vs. uniprot
Match: A0A7S1CBV1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBV1_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.700e-23
Identity = 78/187 (41.71%), Postives = 103/187 (55.08%), Query Frame = 1 
Query:  298 YLKHRPVMNLHQERGHTMPSTFVTPSASVIGNVRIFDHSCVWYGATVRGDKNAVTIGAHVHVGDKAVINTVGRVDTGFSSEVSIESWVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRELSDEDVLAVEAEAERRSRLGELHADEFNPYGQAY 858
            + +HRPV NL+++      + FV PSA+VIG+V+I   S VWYGA VRGD NAV IG +  +GD+AV++T   V+   ++   I  +V                               XXXXXXXXXXXXXX       +LWAGNPA+FVR L+ E++   E +AE  + LG  HA EF P G AY
Sbjct:   56 FARHRPVQNLYEKHPEVENNVFVAPSATVIGHVQILHKSSVWYGAVVRGDVNAVEIGGYSSIGDRAVVSTTKSVEGRPAATCRIGDYVTVGPGALLQSCTIENGVKIGAGAVVMEGALVXXXXXXXXXXXXXXGRRIPSGQLWAGNPAQFVRNLTKEELATFEGDAEFVADLGGEHAHEFLPAGGAY 242
[Close]
BLAST of mRNA_F-serratus_M_contig134.2515.1 vs. uniprot
Match: A0A7S0JJW9_9EUKA (Hypothetical protein n=2 Tax=Coccolithales TaxID=418917 RepID=A0A7S0JJW9_9EUKA)

HSP 1 Score: 110 bits (274), Expect = 1.780e-23
Identity = 89/199 (44.72%), Postives = 111/199 (55.78%), Query Frame = 1 
Query:  277 NFSSSSEYLKHRPVMNLHQERGHTMPSTFVTPSASVIGNVRIFDHSCVWYGATVRGDKNAVTIGAHVHVGDKAVINTVGRVDTGFSSEVSIESWVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRELSDEDVLAVEAEAERRSRLGELHADEFNPYGQAYLQVEQ 873
            N+  S  + +HR VMN+  +R    PS FV P+ASVIGNV +   S +WYGA VRGD++ + IG    +GD+ V+ +     TGFS+   I  WV                           XXXXXXXXXXXXXXXXXXXXXXX  E++AGNPA FVR+LS E++   E  A+    L   HADEF  Y  AY   EQ
Sbjct:   50 NWIFSEPFCRHRAVMNVFDQRPLLAPSAFVAPNASVIGNVEVKCQSSIWYGAVVRGDQSNIFIGGCSSIGDRTVVQSSTVNPTGFSARTYIGDWVTIGQGCVLRACTVDNFSKVGDGCIIQEXXXXXXXXXXXXXXXXXXXXXXXXXEVYAGNPAVFVRKLSKEEIAEFEVSADAVVSLAAKHADEFLDYSDAYQLREQ 248
[Close]
BLAST of mRNA_F-serratus_M_contig134.2515.1 vs. uniprot
Match: A0A3R6YSI6_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A3R6YSI6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.690e-22
Identity = 79/192 (41.15%), Postives = 109/192 (56.77%), Query Frame = 1 
Query:  292 SEYLKHRPVMNLHQERGHTMPSTFVTPSASVIGNVRIFDHSCVWYGATVRGDKNAVTIGAHVHVGDKAVINTVGRVDTGFSSEVSIESWVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRELSDEDVLAVEAEAERRSRLGELHADEFNPYGQAYLQV 867
            S   +HR +M L+ +       ++V P+ASVIG+V I + S VWYG  +RGD N V+IG   ++ D+AVI+T      G +   SI + V                               XXXXXXXXXXXXXXXXXXX  +LWAG+PAK+VR++S+++V  +  +A   ++L E H+DEF PYG AYL V
Sbjct:    9 SSVSRHRQIMALYDKAPVIAHDSWVAPNASVIGDVEICNDSSVWYGVVIRGDLNKVSIGNRTNIQDRAVIHTSSTTTPGLAPGTSIGNNVTVGHGAILYSCTIENNVLVGMGSIVLDGALVXXXXXXXXXXXXXXXXXXXXXQLWAGSPAKYVRDVSEDEVADLVKQASEYTKLAETHSDEFLPYGTAYLDV 200
[Close]
BLAST of mRNA_F-serratus_M_contig134.2515.1 vs. uniprot
Match: Q0E9R6_PLEHA (Putative gamma-type carbonic anhydrase n=1 Tax=Pleurochrysis haptonemofera TaxID=35135 RepID=Q0E9R6_PLEHA)

HSP 1 Score: 103 bits (256), Expect = 2.990e-21
Identity = 95/199 (47.74%), Postives = 119/199 (59.80%), Query Frame = 1 
Query:  277 NFSSSSEYLKHRPVMNLHQERGHTMPSTFVTPSASVIGNVRIFDHSCVWYGATVRGDKNAVTIGAHVHVGDKAVINTVGRVDTGFSSEVSIESWVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRELSDEDVLAVEAEAERRSRLGELHADEFNPYGQAYLQVEQ 873
            NF  +  Y +HR VMNL+ +R       F+ P+A+VIGNV I   + +WYGA +RGD++ + IG    +GD++V+ +     TGFS+   I  WV                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  E++AGNPA FVR+LS E++      AE    L   H DEF  Y   Y   EQ
Sbjct:   30 NFIFNEPYCRHRAVMNLYDQRPRVAQGAFIAPNAAVIGNVDIEPRTSIWYGAVIRGDQSNIFIGGESSIGDRSVVQSSTVNPTGFSARTCIGDWVKIGQGCVLRACTIEDYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEVYAGNPATFVRKLSKEEIEEFGEYAEEVCDLAAKHLDEFLDYPTTYQLREQ 228
[Close]
BLAST of mRNA_F-serratus_M_contig134.2515.1 vs. uniprot
Match: A0A067C675_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C675_SAPPC)

HSP 1 Score: 102 bits (254), Expect = 5.800e-21
Identity = 75/193 (38.86%), Postives = 113/193 (58.55%), Query Frame = 1 
Query:  295 EYLKHRPVMNLHQERGHTMPSTFVTPSASVIGNVRIFDHSCVWYGATVRGDKNAVTIGAHVHVGDKAVINTVGRVDTGFSSEVSIESWVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNELWAGNPAKFVRELSDEDVLAVEAEAERRSRLGELHADEFNPYGQAYLQVEQ 873
            ++ +HR +MNL+ +       ++V P+ASVIG+V I + + VWYG  +RGD N V+IG   ++ D+ VI+T      G +   SI + V                             XXXXXXXXXXXXXXXXXXXXX  +LWAG+PA++VR+++++++  +  +A+   +L + H+DEF PYG AYL  E+
Sbjct:   36 KFSRHRQIMNLYDKVPSVAYDSWVAPNASVIGDVEICNDASVWYGVVIRGDLNKVSIGNRTNIQDRTVIHTSSTTTPGLAPGASIGNDVTVGHGCILYSCTIENNCLIGMGSIVLDGAXXXXXXXXXXXXXXXXXXXXXSGQLWAGSPAQYVRDVTEDEIADLTNQAKEYKKLADTHSDEFLPYGTAYLDAER 228
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig134.2515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ29_ECTSI1.580e-7283.82Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S3GN43_9STRA1.140e-2743.01Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
W7TW63_9STRA6.520e-2750.00Trimeric LpxA n=2 Tax=Monodopsidaceae TaxID=425072... [more]
A0A5A8CT95_CAFRO8.370e-2542.71Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]
K3WLJ5_GLOUD1.600e-2340.61Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A7S1CBV1_9STRA1.700e-2341.71Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S0JJW9_9EUKA1.780e-2344.72Hypothetical protein n=2 Tax=Coccolithales TaxID=4... [more]
A0A3R6YSI6_9STRA6.690e-2241.15Uncharacterized protein n=6 Tax=Aphanomyces TaxID=... [more]
Q0E9R6_PLEHA2.990e-2147.74Putative gamma-type carbonic anhydrase n=1 Tax=Ple... [more]
A0A067C675_SAPPC5.800e-2138.86Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig134contigF-serratus_M_contig134:55766..61802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score237.3
Seed ortholog evalue7.6e-60
Seed eggNOG ortholog2880.D7FJ29
Hectar predicted targeting categorymitochondrion
GOsGO:0000003,GO:0001101,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005773,GO:0005774,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009737,GO:0009791,GO:0009853,GO:0009987,GO:0010033,GO:0010228,GO:0016020,GO:0019866,GO:0022414,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033993,GO:0042221,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0061458,GO:0070469,GO:0097305,GO:0098588,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0098805,GO:1901700,GO:1902494,GO:1990204
EggNOG free text desc.carnitine dehydratase activity
EggNOG OGs2QQV5@2759,COG0663@1
Ec32 ortholog descriptioncarbonic anhydrase
Ec32 orthologEc-07_004610.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1742
Cds size723
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929314.677305-UTR-F-serratus_M_contig134:55765..559211622929314.677305-UTR-F-serratus_M_contig134:55765..55921Fucus serratus maleUTRF-serratus_M_contig134 55766..55921 +
1690962794.9405568-UTR-F-serratus_M_contig134:55765..559211690962794.9405568-UTR-F-serratus_M_contig134:55765..55921Fucus serratus maleUTRF-serratus_M_contig134 55766..55921 +
1622929314.7680109-UTR-F-serratus_M_contig134:60939..618021622929314.7680109-UTR-F-serratus_M_contig134:60939..61802Fucus serratus maleUTRF-serratus_M_contig134 60940..61802 +
1690962795.0044901-UTR-F-serratus_M_contig134:60939..618021690962795.0044901-UTR-F-serratus_M_contig134:60939..61802Fucus serratus maleUTRF-serratus_M_contig134 60940..61802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929314.689924-CDS-F-serratus_M_contig134:55921..560631622929314.689924-CDS-F-serratus_M_contig134:55921..56063Fucus serratus maleCDSF-serratus_M_contig134 55922..56063 +
1690962794.9588032-CDS-F-serratus_M_contig134:55921..560631690962794.9588032-CDS-F-serratus_M_contig134:55921..56063Fucus serratus maleCDSF-serratus_M_contig134 55922..56063 +
1622929314.7073917-CDS-F-serratus_M_contig134:59305..594491622929314.7073917-CDS-F-serratus_M_contig134:59305..59449Fucus serratus maleCDSF-serratus_M_contig134 59306..59449 +
1690962794.9706078-CDS-F-serratus_M_contig134:59305..594491690962794.9706078-CDS-F-serratus_M_contig134:59305..59449Fucus serratus maleCDSF-serratus_M_contig134 59306..59449 +
1622929314.7195964-CDS-F-serratus_M_contig134:59905..600711622929314.7195964-CDS-F-serratus_M_contig134:59905..60071Fucus serratus maleCDSF-serratus_M_contig134 59906..60071 +
1690962794.9786818-CDS-F-serratus_M_contig134:59905..600711690962794.9786818-CDS-F-serratus_M_contig134:59905..60071Fucus serratus maleCDSF-serratus_M_contig134 59906..60071 +
1622929314.7324774-CDS-F-serratus_M_contig134:60408..605431622929314.7324774-CDS-F-serratus_M_contig134:60408..60543Fucus serratus maleCDSF-serratus_M_contig134 60409..60543 +
1690962794.9866693-CDS-F-serratus_M_contig134:60408..605431690962794.9866693-CDS-F-serratus_M_contig134:60408..60543Fucus serratus maleCDSF-serratus_M_contig134 60409..60543 +
1622929314.7487488-CDS-F-serratus_M_contig134:60803..609391622929314.7487488-CDS-F-serratus_M_contig134:60803..60939Fucus serratus maleCDSF-serratus_M_contig134 60804..60939 +
1690962794.9952755-CDS-F-serratus_M_contig134:60803..609391690962794.9952755-CDS-F-serratus_M_contig134:60803..60939Fucus serratus maleCDSF-serratus_M_contig134 60804..60939 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig134.2515.1prot_F-serratus_M_contig134.2515.1Fucus serratus malepolypeptideF-serratus_M_contig134 55922..60939 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig134.2515.1

>prot_F-serratus_M_contig134.2515.1 ID=prot_F-serratus_M_contig134.2515.1|Name=mRNA_F-serratus_M_contig134.2515.1|organism=Fucus serratus male|type=polypeptide|length=241bp
MLTMSARRGGLDAAFRASAAAAKGALKPSKLSVTALARPRNFSSSSEYLK
HRPVMNLHQERGHTMPSTFVTPSASVIGNVRIFDHSCVWYGATVRGDKNA
VTIGAHVHVGDKAVINTVGRVDTGFSSEVSIESWVVIEPGAVLTSCMIGN
RCHIGAGAVVAEGSVVEDGGQIAAGTVVPPGCLVPKNELWAGNPAKFVRE
LSDEDVLAVEAEAERRSRLGELHADEFNPYGQAYLQVEQA*
back to top

mRNA from alignment at F-serratus_M_contig134:55766..61802+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig134.2515.1 ID=mRNA_F-serratus_M_contig134.2515.1|Name=mRNA_F-serratus_M_contig134.2515.1|organism=Fucus serratus male|type=mRNA|length=6037bp|location=Sequence derived from alignment at F-serratus_M_contig134:55766..61802+ (Fucus serratus male)
GCGAAGCGGGCAGGTACAGTAGGTGCTCAGGAAACCCTAACTGTGAGACA
CGGCACAGCCCGACGAAATCTGCGAAGGCACATTGGAGTCAGTAGGAAAT
ATTGCTGTGCGTTGAACGGACGGTGTACGGAGAATAAGTCTGAAACGCGG
GGTCAAATGCTGACGATGTCAGCGAGACGAGGAGGCCTGGATGCTGCGTT
CCGCGCTTCGGCGGCGGCGGCCAAGGGAGCTCTCAAGCCCTCAAAGCTCT
CCGTCACAGCGCTGGCCCGACCCAGGAATTTTTCCTCTAGCTCTGAATGT
GAGGTTTCTTCGCATAGCATTGCACAGGAATATGTACCCAGGACACCTGC
ACGCCTTGAAATTCATGCTGTACAATCAGTAGTCAGTGGCTATACTCCAC
AATACTCGGACTCACACAAACAGTAGTACAGCAGTAGTACAACATACCTA
TGGGTACCTGGTATTAAAATATGAGTATCTTACAGGCCGCAGTATCGTAA
CGCTATGCAGGTATTAATAGTCGTGGTAACCTCGCAGATGGCTTTCGAGC
GGAGTCGTGATTTCGATTCTTGGCATTATTAGGTCTTTTATTCTGGCTTC
CGTAGTGGACGGCGTAAGAACGTAAGTAAAATCCATCTATTGGTTGATGA
GGTGTGAGAGAGGTGAACTTGTATCGCGATAAAAAGTCGTAGGAGAGAAT
GGGGGAGAGATGGGAAGATCCTTAAGGACCACAGGAAGGATGGCAACGTT
GCAGTTGGTGGGATTGGTAACCTAGCCCGTTGAGGGCCATCGGCCGTAAG
TAAGACACTAACAAACAAATACTGTAAACAAAACCCAGAGCCGGCGGAGA
AGATTGTTTCTTTATACACCTAGTTTGTGGAGTACACGGCACAGGGCAGA
GATGGCGCACCTTTACGTCGGTAGGGTAGTGTTAAATGGCCTATCAGGAC
TCGGAGACGCTTTCCCGTTCAAATCATACTTTTTCCCAGTCATTTGCTCA
GGATTGCATGGAAGTTATTCTACAAGACTGTTATCACCCTCAAAAGTAGA
AGAGCACTGCGAGTCCCGACGGACAGAGCTGGTAGATAGTCTGGAGGACG
GCTCTCCGCCCCCTGTACTCTGTCCTCCTGAGCCCCCCGTGTGATGCGGT
GCACCAGGTTCCGCGAATTCAATTGCATGTGCGTACGGGTATTTTTCACC
TCGAGTTTTCTTTTATCTGAACTACCGGTTAACGGTATTAGGCCGATCGT
AGAACCGGGGAGAGAACGGAAGATCCTTAAGTGACTACATACTGATATGG
ATTATACAGTCAGGATGACGACGTCGCCGTAGGTGTTGTTTTTTTTCACA
TTAAGCGATCGGGCCTCAACCATACCCAGTAATAAACGTGGTTGCCAATC
CGATACGTGGTCCCTGCTGGACAGAAAAAGGTCAAAGGAACATCTACAAA
GCTCCAACGAGAGCAAAATAAATGCAAAGCAAAAACAAAACAAAACAAAA
CAAAACGACAAAGAGAAAGAACCAAATACAAAATACACATGCCAGACGAA
GATAGAAGAAGGGCACTCGACGGAGAGAGTTTGGTATAGTACCAGCCGCG
AGCCATCCGATACCCTCCCCGGATCACAGCCATGCAATGGGACTATAATA
GTATACTATTAGCAGGCTGATTTGGCCCATCGGCATGAAGTAAGATACAA
AGAAACAAAAGAACACGGATGTTGGGCCCTTGGTTTCCAGCTTAGCGATA
CAGCGTTGGCATCGACATGCTCTTGTACCGTAAAGCACCCCGCCGCGCCA
GAGGTAATTCAACTGGTTATCTGTACAGCACAGTATGACCGGTTGAAGAG
CAGTCCTGAGTTTCGATCTCTGGAAAGTACAAAACAGTTGACTGTTGTCC
AGCAGCAAACACAAAGGCGTGGATAGTGCAATCAAAGTTCGACTGTTAAA
CGACAGGGTGATACAGCACATACGTTAGAAAACAGCACGCGCGAATAGGG
GAGAGACTAGGAGAGATCCTAAAAGACCGCCGGTAGGATAAGCAGCATTA
CTTAGATTTGGGAACCTGTACGGCACTTTCAGCATGCCCACTTCATACCA
ATAGTGGGTGGGGGGAAATAGGCGCGTATTAATTGGTCCATGGTGACTTG
CCAAGGCAGCACCCGTTCGGAACTACTGTACCTTAAGGTTTACTGGTCCT
GTGCCTGCGGACTCTCGGCAGTGAACGCCATCGGTACGCAATTGCGTGAC
TCGATAAACTCGGTACTGGCCCGATGGCGTATGGCGGTTTTTAAATACAT
GAATGGACGCCGCCGCGGAAATCGGGAGGAATCCCGCAAGTAAGCACCAG
ATTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCGGGACGGGACTGCCG
AACCCGTCTCGCGAAACGAAATTCTCAGGCGCGAACAGGGACAGGGAATA
ATTCATTTTCCCTGTTCCGCTAGCTGACCACGAGCAGATTGACAACCTTA
CCCGGTTGATCCTTACTCTTGCTATACCAGGTATGTAATAACCATACATA
CTATGGTCATCACATATAGCAAGAGTAAGGATCAACCGGGTAAAGTTGCC
AATCTTACTTGTGGTCAAAAGCTGAACAGGGATCTTCCCTGTTTTAGCTG
CCCCCGTTCGCGCCTGAGAACTTGGTCTAGCGAGACAGGTTCGGCCGTCC
CTTGCCGTGTTGGCCTGCTCATCCTTCACACTAAGGCTGGATCTGGTGCT
TATTCACGGTATTCCTCCCGCTTTCCGCGACGACGTCCATTTATTTATTT
ATACCGTCAACCGCCATCGGGTCAGTCCCGAGTTTGTCGGGTCACGCAAT
CGCGTACCGATGGCGCTCACTGCCGAGAGTTCGCCGGCGCAGAGTCGGTA
GTCCTCAAGGTAGTTCCAAACGGGTGCTGCCCTTTTCAGGTATCACCATG
GACCAATTTTTGTGTGCCTCTCTTTTCCCCCACCCACTATTAATAGTGGT
ACAGTGAACATGTACGATACAGAAAGTACTATATCGGAGGCTATAGTATA
TCGTTAGTAGTAGAACGTTCATGGGCCCATCGGCAGAAAGGGAGGCTTGA
CGAGCAAACTCATACTCTACAGCAGATAAAGTTGTGTTCGAATCGCATCG
TACCGGGAGTAATGTCTCCTTCGGCGTGCTCTGAACTGCGGATCGAAACC
TCTGAGCTTGCAAGCCACGAGGGTCATGCGGGTCGAGTTCTTTCGAGGCT
CTCGAAAGCCGGACACGAAGGACGTCGTTCCCGATTTCCTTTTATCACGC
TCGACGGCGCGCGCTTGACGATGTTATTCAACTGGCATGATATCTGGGAG
GAATTCATCCTGTCACCCCATCCCCCTCTTCTGTCCTGCTCGGCCGATCC
AATTCGCCCTCTCTGCATGATCAATCCAACTTGCACCGGGCCTACACTTC
TCTAGCAACGCCGTATCTGTCCAATCGTCTTAATTTTTACTCGTCGTTCT
TCGTGCTCTCGTGTCATTCATCGCTTGTTTTGGTCGGCAGACTTGAAGCA
CCGACCTGTAATGAACCTTCACCAAGAGCGGGGACACACCATGCCGTCGA
CATTCGTCACGCCAAGCGCCTCGGTGATAGGCAACGTGAGGATCTTCGAC
CACTCGTGCGTGTGGTACGGGGCCACTGTACGCGGTAAGCAGTGAGGGCG
AGGGGTCGGACCGCCGCCGGCATTGGTGAGATCTCTCCGGACACACTTTT
TTCTTCCTCGCCTCTTCACGGTATGGTAAAAGTACCGCAGTTCTTAGCGC
ACCGGTACGGCGTTTCATCCACGGCTGAAATGGTGATACTCACGCTTTCG
CAGCGGCGCGGATTCCACGAGAGAAAAAAATGCCTGCCAGGCGACGGCCG
TGTGGTGGCGTTCGAAGGGCATGGAAGGGGTGGTGTGCGTAGGGCGAGGT
TGAAAGCGTCCCGATTCGCGCCCGCGGTGAATCCTGCGCCGTATCGGTCG
ATGCTTCAGCGGCAAGCAATGCGCGCGGAGCACGATTGGTGCACTTCCGT
CGCCCGTATTGGGACGTCGTGAAACGATCTCGTTCTCTCCGTGTTGCGTG
TTGTGCTTCTCCGTGTGCTTACGTCCCCTTTCGTGAAAAGGCGACAAGAA
CGCAGTAACGATCGGCGCGCACGTCCACGTCGGTGACAAGGCGGTCATCA
ACACTGTGGGGCGGGTGGATACCGGCTTCTCCTCGGAAGTATCGATCGAG
TCCTGGGTGGTTATCGAACCCGGCGCCGTCCTCACGTCCTGCATGATCGG
CAACAGGTGAGCCCCAGTTCGGAGTTCGTGAGTGTGAGCTCCCCACCGAG
GAAATGATATTTTCAGGCAGGCTTTTATGTTCTTCGCTTGCTTACGACAA
TAGCGTCGCAAAGATTAAGATTTGAAACGGCGTAGTTTTTTTTTTTTGTT
TTTGTTTTTTTCGGGTTTCGTACTTTGGGAGATCGTAACAGCGCGGGGTT
CCGGTCGTGCGTCTGTCCGCATTGGCCTTATGTTCCTCCCGCATCACCAA
TCACCACCTTCTTCCACTATCTCGTCTTACCGAGGGCGTGTTGGTTCTTC
CTGCTCGCGTTTGGTTCGGTTGCGCGTCGATTTTTTTTTTCAGGTGCCAC
ATCGGTGCCGGAGCGGTGGTAGCAGAGGGTTCTGTGGTGGAAGACGGGGG
TCAGATCGCCGCGGGAACCGTTGTGCCTCCCGGCTGCCTTGTGCCCAAGA
ACGAGCTGTGGGCTGGCAACCCGGCGAAGTAAGCCGAGATGATTTCTTAC
AGCGTTTCGCCAAGCTTCAAACTGATGCTGTAAATAAGAATGTTCCAAGG
TAGTCGCCATGGAACCTGTGCGGAATGCGCCGTTTTGTTTGCAACCGCAG
TCGGAATCATTTGACAGGGACCCTCACCTCCCACGTGCGCGGTGGAGACC
CAATCGCGGCATAGAAGTGGTATATCTCTCGCCTCATAATAATAGTTTCC
TCCCGGTGCTGACAATGTGTCTCTGTTACGCGTCACAGGTTCGTGCGCGA
GCTTAGCGATGAGGACGTGTTGGCTGTGGAGGCGGAGGCCGAGCGAAGGA
GCCGCCTTGGAGAGCTTCACGCTGACGAGTTCAACCCGTACGGCCAGGCT
TACCTCCAAGTGGAGCAAGCGTAAATTTCTTGCGCCAAGGGGTCGAGGGT
GGAAATATTCTCAGAGGGTGCTGTAGCTAGGGCAATAGTGAACGTTGAGG
CAGCCACAGGATGCCGTTCCTAGATCTGTCAGAGGCGTGGCGCTTCTCAC
CGGAGCGTTCATTGCTCGTTCGGTTTTAGACGGGTGCACACACCTTCAAC
GGTAGCTTTAGCCTCGTGCTGGCCCTCACCGGTAAGATTAGCATTTCCGG
CAGGTACGCTGCAAGGGTTTCGCTTGCGTTGTTTGCCGATGTGAAAAACT
GCAGTACACAAGTGAAACTCACGTGGCGCCTTTCCGGCTCTAACTATTAT
ACCAACTCCCCAACCGCCAGATGGAACATGTAGGGGGTTAAGATGATTTC
GTATATCACATCCGAAAATGCACCAAGTACCAGGCACTTAAAAAAATGAA
TGTAACAGGCACTTGGAAGAAAGAAAGGAGAAAACTTGGCCCCACTGCAG
CCGAAGAAGCAGTTGTCAAGCAGTCGTGGACCTCGCACCCTTACCTAACA
AGAGTCCCGCGACCTATAGCGAGAAATCTGTCCATGAAACAAATAAGGGA
AACTTGTTGAAACAAAATTTTATGTCGGCTACGGTGTCAGGGTCAAGTGC
AAGTAGGTGTTACTTTAGTGATCTGTCGTTCTCAATGTTGACGCCAGAAA
CCCGTGGTATGTAATATGTAATACTCTTACGCCCCCGAGTTTGGTCTGTT
GCTAGTGGTTGCTTGCATTGTTCAGCCTGAATTATTCCTCTTGTAGGTGG
ACTCCTCCAATGTCTGACTTAAAACTAGTCAATGTAAATTGAAGCCCAGT
CCCCCGATCTAGGCAATAAAATCGAACCAAATCTTGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig134:55766..61802+

>mRNA_F-serratus_M_contig134.2515.1 ID=mRNA_F-serratus_M_contig134.2515.1|Name=mRNA_F-serratus_M_contig134.2515.1|organism=Fucus serratus male|type=CDS|length=1446bp|location=Sequence derived from alignment at F-serratus_M_contig134:55766..61802+ (Fucus serratus male)
ATGCTGACGATGTCAGCGAGACGAGGAGGCCTGGATGCTGCGTTCCGCGC
TTCGGCGGCGGCGGCCAAGGGAGCTCTCAAGCCCTCAAAGCTCTCCGTCA
CAGCGCTGGCCCGACCCAGGAATTTTTCCTCTAGCTCTGAATATGCTGAC
GATGTCAGCGAGACGAGGAGGCCTGGATGCTGCGTTCCGCGCTTCGGCGG
CGGCGGCCAAGGGAGCTCTCAAGCCCTCAAAGCTCTCCGTCACAGCGCTG
GCCCGACCCAGGAATTTTTCCTCTAGCTCTGAATACTTGAAGCACCGACC
TGTAATGAACCTTCACCAAGAGCGGGGACACACCATGCCGTCGACATTCG
TCACGCCAAGCGCCTCGGTGATAGGCAACGTGAGGATCTTCGACCACTCG
TGCGTGTGGTACGGGGCCACTGTACGCGACTTGAAGCACCGACCTGTAAT
GAACCTTCACCAAGAGCGGGGACACACCATGCCGTCGACATTCGTCACGC
CAAGCGCCTCGGTGATAGGCAACGTGAGGATCTTCGACCACTCGTGCGTG
TGGTACGGGGCCACTGTACGCGGCGACAAGAACGCAGTAACGATCGGCGC
GCACGTCCACGTCGGTGACAAGGCGGTCATCAACACTGTGGGGCGGGTGG
ATACCGGCTTCTCCTCGGAAGTATCGATCGAGTCCTGGGTGGTTATCGAA
CCCGGCGCCGTCCTCACGTCCTGCATGATCGGCAACAGGCGACAAGAACG
CAGTAACGATCGGCGCGCACGTCCACGTCGGTGACAAGGCGGTCATCAAC
ACTGTGGGGCGGGTGGATACCGGCTTCTCCTCGGAAGTATCGATCGAGTC
CTGGGTGGTTATCGAACCCGGCGCCGTCCTCACGTCCTGCATGATCGGCA
ACAGGTGCCACATCGGTGCCGGAGCGGTGGTAGCAGAGGGTTCTGTGGTG
GAAGACGGGGGTCAGATCGCCGCGGGAACCGTTGTGCCTCCCGGCTGCCT
TGTGCCCAAGAACGAGCTGTGGGCTGGCAACCCGGCGAAGTGCCACATCG
GTGCCGGAGCGGTGGTAGCAGAGGGTTCTGTGGTGGAAGACGGGGGTCAG
ATCGCCGCGGGAACCGTTGTGCCTCCCGGCTGCCTTGTGCCCAAGAACGA
GCTGTGGGCTGGCAACCCGGCGAAGTTCGTGCGCGAGCTTAGCGATGAGG
ACGTGTTGGCTGTGGAGGCGGAGGCCGAGCGAAGGAGCCGCCTTGGAGAG
CTTCACGCTGACGAGTTCAACCCGTACGGCCAGGCTTACCTCCAAGTGGA
GCAAGCGTAAGTTCGTGCGCGAGCTTAGCGATGAGGACGTGTTGGCTGTG
GAGGCGGAGGCCGAGCGAAGGAGCCGCCTTGGAGAGCTTCACGCTGACGA
GTTCAACCCGTACGGCCAGGCTTACCTCCAAGTGGAGCAAGCGTAA
back to top