mRNA_F-serratus_M_contig134.2528.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig134.2528.1 vs. uniprot
Match: A0A6H5L8N5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8N5_9PHAE) HSP 1 Score: 378 bits (971), Expect = 4.600e-108 Identity = 264/590 (44.75%), Postives = 337/590 (57.12%), Query Frame = 3
Query: 261 RSRRLARQ--STAREVVAGCKAYSVRLKETPLPVQLHTSPGTTAKGTVRLETDQSGLEQLVVQAEGSQLFGLVRLSHKHVFKVGELERSQSTHTAFLTRSVRILTKGNAKAKEDMLLRSLSLIHKREAVDVTCETKEDCEHLAVWIDAKWSVAMIKKSFRGNPRIVLALQGRNQTLNDRGLYEVLEKA------------HDEELQGGGSGEDAAAYGILPKLDDATMMRLEDDLLDGVHVTYHDLALGGYYSRSFPRRLRYDCQSEAGLIYLEASYEKDGQTIVQKVSDLMQVGGGPSVHGPTAGLLRATQG-KPAQREAAVSLVFRDMSLDITCGTKQDAWELVLYFSAVGGFRLARTTPRIRKVYQLPPVEETAPDTAVKARAGRHSPGVIKVEAMGAHRKSPVVRSAVGTSAFQAEACHRKGVANLD-----SP-------------PPKHHAQQPGP---LG---PTFSTRFRAGLGALGRDHATQVS------ASSGFGLDLTRSVSDSSSCGGFALDRPKEESFRPEVQQRSWPTPANGRXXXXXXXXXXXXXVPSAPPQRSTFSPMGPLPDTLRETRGKKGR 1895
R ++LA+Q + +VV CK YS RL + P+ V+LH S G A G + LE G Q+VVQA GS LFGLV+ +HVFKVGELERS STHT+FL RSV+ L+KG+ K K+++L RSLSL+HK EAVD+T +K +C+ L WI AKWSVAM++KSF+GNPRI +ALQGRN ++ +G Y+ +KA +E+ G G +G LPKLD T +LE+DLL+GVHVTYHDL+L GY S S PRRLRYDCQS+AGLIYLEAS+E DG IV+ +S L+QVGGG S HGPTA LLRAT G QR AAVSLVF S+DITCG +DA ELVLYFS + GF A+ + R Y APD A + A GV + G HR G S Q + H G A L+ SP P + A++ P LG P+FSTRFR+G G R + S +S G + T SV S G AL R ++ E + +P + R P+A +R+T + + P PD E G+KGR
Sbjct: 3 RRKQLAQQRAGASSDVVEACKLYSQRLMDKPVRVKLHVSSGKVADGNIGLEKLPGGDMQIVVQAHGSNLFGLVKREFRHVFKVGELERSSSTHTSFLLRSVKHLSKGDKKMKKEILERSLSLVHKNEAVDMTFASKTECDQLGEWIAAKWSVAMLQKSFKGNPRIAMALQGRNMSMARQGAYDAPKKAGRRGRXXXXXXXXQDEVDGAG-------FGRLPKLDAKTKAKLEEDLLNGVHVTYHDLSLRGYISTSTPRRLRYDCQSKAGLIYLEASFEGDGDDIVEPLSSLVQVGGGLSAHGPTASLLRATAGDNNDQRAAAVSLVFSARSMDITCGCVKDAHELVLYFSELKGFTRAKPSNRSLLGY--------APDDAGRQTARESCIGV-RGGGNGEHR---------GESPRQRDDVHAAGAAMLNMSETGSPGTGIDVEDATGQSAPSYGARKMAPAETLGSSVPSFSTRFRSGYGDDDRGDGGEGSPGLLRQSSGASGFNATASVRGLPSEGEAALHR----VWKVEGGAKGSESPLSPRPLAAGAPQIHS--TPTAG-RRATIAVVSPTPDVRTEGGGRKGR 560
BLAST of mRNA_F-serratus_M_contig134.2528.1 vs. uniprot
Match: D8LGP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP9_ECTSI) HSP 1 Score: 343 bits (880), Expect = 8.310e-96 Identity = 226/471 (47.98%), Postives = 278/471 (59.02%), Query Frame = 3
Query: 429 QLVVQAEGSQLFGLVRLSHKHVFKVGELERSQSTHTAFLTRSVRILTKGNAKAKEDMLLRSLSLIHKREAVDVTCETKEDCEHLAVWIDAKWSVAMIKKSFRGNPRIVLALQGRNQTLNDRGLYEVLEKA------------HDEELQGGGSGEDAAAYGILPKLDDATMMRLEDDLLDGVHVTYHDLALGGYYSRSFPRRLRYDCQSEAGLIYLEASYEKDGQTIVQKVSDLMQVGGGPSVHGPTAGLLRATQG-KPAQREAAVSLVFRDMSLDITCGTKQDAWELVLYFSAVGGFRLARTTPRIRKVYQLPPVEETAPDTAVKARAGRHSPGVIKVEAMGAHRKSPVVRSAVGTSAFQAEACHRKGVANLD------SPP--------------PKHHAQQPGP---LG---PTFSTRFRAGLGALGRDHA--------TQVSASSGFGLDLTRSVSDSSSCGGFALDR 1700
Q+VVQA GS LFGLV+ +HVFKVGELERS STHT+FL RSV+ L+KGN K K+++L RSLSL+HK EAVD+T +K +C+ L WI AKWSVAM++KSF+GNPRI +ALQGRN ++ G Y+ +K ++E+ G G +G LPKLD T +LE+DLL GVHVTYHDL+L GY S S PRRLRYDCQS+AGL+YLEAS+E DG IV+ +S L+QVGGG S HGPT+ LLRAT G QR AAVSLVF S+DITCG +DA ELVLYFS + GF A+ R Y APD A + A GV + G HR G S Q + H G A L+ PP P + A++ P LG P+FSTRFR+G G R Q SA+SGF + T S+ S G AL R
Sbjct: 2 QIVVQAHGSNLFGLVKREFRHVFKVGELERSSSTHTSFLLRSVKHLSKGNEKMKKEILERSLSLVHKNEAVDMTFASKAECDQLGEWIAAKWSVAMLQKSFKGNPRIAMALQGRNISMAREGAYDAPKKTGRRGRXXXXXXXXEDEVDGAG-------FGRLPKLDAKTKAKLEEDLLGGVHVTYHDLSLRGYISTSTPRRLRYDCQSKAGLVYLEASFEGDGDDIVEPLSSLVQVGGGLSAHGPTSSLLRATAGDNKEQRAAAVSLVFSARSMDITCGCLKDAHELVLYFSELKGFTRAKPPDRSMLGY--------APDDAGRQTARESCTGV-RGGGTGGHR---------GVSPRQQDDVHAAGAAMLNMSETDGGPPGTGIDVEDATGQSAPSYGARKMSPAETLGSSVPSFSTRFRSGYGGDDRGDGGEGSPGLLRQSSAASGF--NTTASLRGLPSEGEAALHR 445 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig134.2528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig134.2528.1 >prot_F-serratus_M_contig134.2528.1 ID=prot_F-serratus_M_contig134.2528.1|Name=mRNA_F-serratus_M_contig134.2528.1|organism=Fucus serratus male|type=polypeptide|length=1119bp MVERSRSRRLARQSTAREVVAGCKAYSVRLKETPLPVQLHTSPGTTAKGTback to top mRNA from alignment at F-serratus_M_contig134:343879..383892+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig134.2528.1 ID=mRNA_F-serratus_M_contig134.2528.1|Name=mRNA_F-serratus_M_contig134.2528.1|organism=Fucus serratus male|type=mRNA|length=40014bp|location=Sequence derived from alignment at F-serratus_M_contig134:343879..383892+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig134:343879..383892+ >mRNA_F-serratus_M_contig134.2528.1 ID=mRNA_F-serratus_M_contig134.2528.1|Name=mRNA_F-serratus_M_contig134.2528.1|organism=Fucus serratus male|type=CDS|length=6714bp|location=Sequence derived from alignment at F-serratus_M_contig134:343879..383892+ (Fucus serratus male)back to top |