mRNA_F-serratus_M_contig134.2524.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig134.2524.1
Unique NamemRNA_F-serratus_M_contig134.2524.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig134.2524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig134contigF-serratus_M_contig134:227410..230098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size837
Cds size834
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929313.892235-CDS-F-serratus_M_contig134:227411..2280031622929313.892235-CDS-F-serratus_M_contig134:227411..228003Fucus serratus maleCDSF-serratus_M_contig134 227412..228003 -
1690962794.6600637-CDS-F-serratus_M_contig134:227411..2280031690962794.6600637-CDS-F-serratus_M_contig134:227411..228003Fucus serratus maleCDSF-serratus_M_contig134 227412..228003 -
1622929313.9140935-CDS-F-serratus_M_contig134:229856..2300981622929313.9140935-CDS-F-serratus_M_contig134:229856..230098Fucus serratus maleCDSF-serratus_M_contig134 229857..230098 -
1690962794.6699746-CDS-F-serratus_M_contig134:229856..2300981690962794.6699746-CDS-F-serratus_M_contig134:229856..230098Fucus serratus maleCDSF-serratus_M_contig134 229857..230098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig134.2524.1prot_F-serratus_M_contig134.2524.1Fucus serratus malepolypeptideF-serratus_M_contig134 227412..230098 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig134.2524.1

>prot_F-serratus_M_contig134.2524.1 ID=prot_F-serratus_M_contig134.2524.1|Name=mRNA_F-serratus_M_contig134.2524.1|organism=Fucus serratus male|type=polypeptide|length=278bp
LFCIVLSTTVLALCYSIYLCIGFRQGEMIPAKSSAIALAVGLAATGLTAT
TELAGAFVYTCSTGDGVGRRPRGAFVRRRESQTSSLIRSGGNRCYNDDDD
QGRARGSIRCRATTKMGMLRRGRRGTEVVSLLPMADDSDSDRGDHSVVEV
DEVDGRGERKREVHDALTEVEQGVAQVQDALTEAEQGVALATEVAVEAVM
SAAEEAESTRQTYTAAALRGLKRARVALEEALDELGRSTGDELGLAPPAY
MDLPFPFPLTSDSSDDNEALAGDGVEGE
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mRNA from alignment at F-serratus_M_contig134:227410..230098-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig134.2524.1 ID=mRNA_F-serratus_M_contig134.2524.1|Name=mRNA_F-serratus_M_contig134.2524.1|organism=Fucus serratus male|type=mRNA|length=2689bp|location=Sequence derived from alignment at F-serratus_M_contig134:227410..230098- (Fucus serratus male)
TTATTTTGTATAGTACTTTCTACTACTGTGCTTGCTCTCTGCTACAGTAT
CTATTTGTGCATTGGATTTCGTCAAGGCGAAATGATACCTGCGAAATCAT
CAGCGATTGCTCTGGCTGTGGGGCTCGCGGCGACGGGTCTGACTGCCACC
ACCGAGCTCGCAGGCGCTTTTGTGTATACGTGCAGCACCGGTGATGGCGT
TGGTCGCCGCCCCAGGGGCGCGTTCGTTCGCCGGCGGGAGAGGTCAGTTT
GGCCCGTTTTCTCAAATTTACTACCTGATACACGTTAGACAAGAACAAGT
ACGCAAGTACTCTCACACCCATCTTGGTCCAAGGGTTGGTGTGTCATCCC
CGTCGGTTGTGTCCAGGATATTCCATGCGCCCCTCATAACCCGAACCAAT
TCGCTGGCGTTACAGTTATGTGTTGCAGTGGATATTTTCCTCCTGTTGAT
CGGGGTCAAGTTGCAAAGTCCATTCGCGAACAGCCTCGTGCTTCTACTTC
GTCAAGGTAATGTCACAACGACGTTATTTGTAGTACTACAGTAGTACCAA
ACATCAAGCGGTTTGCGTCTGCCTTCTAGCCATCGGGCAGCGAAACTTCA
CCCCAAAGAGAGCAGGAGCAGCGGCTTCAGGCCAGGTCAAAGGAGCCGGG
TCCTTTTGCTGTACTGCCTTTTGACGTGCTGTTTGGCGAGCCACTATTTT
TCATGTAGTTCAACTGGCTTTAGATTTACGAGCTGTAAGCAACATGTACC
GGTCGAGTAGAACTCAGTTTGCTATTATTACTTGGTCACAAATCGTACAC
GAACAGCAGCAGTAGATGCATACCAGATTCAGCCTGAGTATGGAGATGAG
GAGACTGACGCATTCTCAAACGAGGACAGGGGAAAAAATATTTCCCCTGT
GCAGCTGACCTCGAGCAGGATTGGCAACCTTACCCGGTTGATCGTTACCC
TTGCTATATGTGATGACCATACATAAAACAGTATCTGGTACCAGCTGTTG
AATCAATTCAAAGGAGTTTCAAGAAAAATCTGAAATTTACTGTATATAGA
CCTTCTGCGCATCCCCCAATCAGGGGGGAAAATGTCAAAACGTTTAGGTG
GGATGATAAGCAGAGACAAAACCTCTTCATGGCATTTTAACGGGTTCCCC
AATGGTCGTAACATTGGGTCAACAGTATAATACCGGGGAGAAGCCCACCG
TTATACTGTACACTTACATTAGTCGCCATGCCGGGGCACCAAACAAAAAG
TAAACATAAACAATGTAGTAAGTACATCATTAAACAGGGTAGTTGCCACT
CCCGCTCGTGTTCTGCTGAACACGATTAAAAGAATGAAATAAAAAGTATG
GCAGCCCCCCCCCCCCCCCTCCAGGATGCCCGTTCGGAGAAATAAAAATA
AAAATAAAGTAACGCGTCTACATATCTAGGATCTACGCAGGTCTCGATCA
GACTCGCGTCCGTACTAGGATTCCTTCGACTTGTCAGCTAGGCCATTGAG
TGTCGCTTCGCAAAGTTCTACCCCTGTACCTCGTATAATGAAAATCTTGC
TACTACAGAAGTACGCACCCGCACATCTTGCGAAGAATTAAATTCGTATC
CACCTGAACGAAAAGGATCCCCAATCGAAAAACGGGCCGCATTTCATGCT
CGTAGCTTTCGAGAGCTCCTGTTCTGCTCGATCGCCACTTGGGAGATCGA
GGGTGCTGACAGAGTGACTATCTGCGTTTTACTTGTACCTATGTGTACTG
TGAGCGAAACCGCGTGTTTGACCCAGGTGCAAGGTATTGTAATTTATAGC
GGAAACATATCACGTTTACGAGTTACAGATAAACACTGTAAAGCAACATT
ACTTCCTCGGCCTCCGACCAATTCACCGCCTTTTGATTGACACTACAAAG
GCCTTGATGCTTCTCTCCTCGTTAACCCCCCCCCTCCCTCTACCCCACTC
CCCATTCGCTTTCGCATCTCAAACGGCGTTCGCATTGCATACGGGTTCGT
ACCCTGCCGGTAAACTCCACCACTTGACCATGGTCTATCCTTACGCACGT
AACTTCGTGGGGGGAAACACCGACCATTCGCCACCCACGCCACAGCCAAA
CCTCCAGCCTGATCCGATCGGGAGGAAACCGCTGTTACAACGACGACGAT
GATCAAGGACGAGCGCGGGGGTCAATCCGATGCCGCGCGACGACCAAGAT
GGGCATGCTCAGGCGGGGGCGCAGGGGGACGGAAGTAGTATCACTGCTGC
CGATGGCTGACGACAGCGATAGCGACAGGGGCGACCACAGCGTCGTGGAG
GTCGATGAGGTGGACGGGAGGGGGGAGAGAAAGAGAGAAGTTCACGACGC
GTTGACGGAAGTGGAACAGGGAGTAGCGCAGGTTCAGGACGCGTTGACGG
AAGCGGAACAGGGAGTAGCGCTGGCAACAGAGGTGGCGGTAGAGGCAGTT
ATGTCGGCGGCGGAAGAGGCGGAATCAACGAGGCAAACCTACACCGCGGC
TGCCCTGCGGGGGCTCAAGCGGGCCCGCGTGGCGCTGGAGGAGGCCCTCG
ACGAGCTCGGCAGATCGACCGGGGACGAGCTGGGCCTCGCTCCCCCGGCT
TACATGGACCTGCCCTTCCCGTTCCCGCTTACCTCAGACTCCTCCGATGA
TAATGAGGCGTTGGCGGGGGACGGGGTGGAGGGCGAGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig134:227410..230098-

>mRNA_F-serratus_M_contig134.2524.1 ID=mRNA_F-serratus_M_contig134.2524.1|Name=mRNA_F-serratus_M_contig134.2524.1|organism=Fucus serratus male|type=CDS|length=1668bp|location=Sequence derived from alignment at F-serratus_M_contig134:227410..230098- (Fucus serratus male)
TTATTTTGTATAGTACTTTCTACTACTGTGCTTGCTCTCTGCTACAGTAT
CTATTTGTGCATTGGATTTCGTCAAGGCGAAATGATACCTGCGAAATCAT
CAGCGATTGCTCTGGCTGTGGGGCTCGCGGCGACGGGTCTGACTGCCACC
ACCGAGCTCGCAGGCGCTTTTGTGTATACGTGCAGCACCGGTGATGGCGT
TGGTCGCCGCCCCAGGGGCGCGTTCGTTCGCCGGCGGGAGAGTTATTTTG
TATAGTACTTTCTACTACTGTGCTTGCTCTCTGCTACAGTATCTATTTGT
GCATTGGATTTCGTCAAGGCGAAATGATACCTGCGAAATCATCAGCGATT
GCTCTGGCTGTGGGGCTCGCGGCGACGGGTCTGACTGCCACCACCGAGCT
CGCAGGCGCTTTTGTGTATACGTGCAGCACCGGTGATGGCGTTGGTCGCC
GCCCCAGGGGCGCGTTCGTTCGCCGGCGGGAGAGCCAAACCTCCAGCCTG
ATCCGATCGGGAGGAAACCGCTGTTACAACGACGACGATGATCAAGGACG
AGCGCGGGGGTCAATCCGATGCCGCGCGACGACCAAGATGGGCATGCTCA
GGCGGGGGCGCAGGGGGACGGAAGTAGTATCACTGCTGCCGATGGCTGAC
GACAGCGATAGCGACAGGGGCGACCACAGCGTCGTGGAGGTCGATGAGGT
GGACGGGAGGGGGGAGAGAAAGAGAGAAGTTCACGACGCGTTGACGGAAG
TGGAACAGGGAGTAGCGCAGGTTCAGGACGCGTTGACGGAAGCGGAACAG
GGAGTAGCGCTGGCAACAGAGGTGGCGGTAGAGGCAGTTATGTCGGCGGC
GGAAGAGGCGGAATCAACGAGGCAAACCTACACCGCGGCTGCCCTGCGGG
GGCTCAAGCGGGCCCGCGTGGCGCTGGAGGAGGCCCTCGACGAGCTCGGC
AGATCGACCGGGGACGAGCTGGGCCTCGCTCCCCCGGCTTACATGGACCT
GCCCTTCCCGTTCCCGCTTACCTCAGACTCCTCCGATGATAATGAGGCGT
TGGCGGGGGACGGGGTGGAGGGCGAGCCAAACCTCCAGCCTGATCCGATC
GGGAGGAAACCGCTGTTACAACGACGACGATGATCAAGGACGAGCGCGGG
GGTCAATCCGATGCCGCGCGACGACCAAGATGGGCATGCTCAGGCGGGGG
CGCAGGGGGACGGAAGTAGTATCACTGCTGCCGATGGCTGACGACAGCGA
TAGCGACAGGGGCGACCACAGCGTCGTGGAGGTCGATGAGGTGGACGGGA
GGGGGGAGAGAAAGAGAGAAGTTCACGACGCGTTGACGGAAGTGGAACAG
GGAGTAGCGCAGGTTCAGGACGCGTTGACGGAAGCGGAACAGGGAGTAGC
GCTGGCAACAGAGGTGGCGGTAGAGGCAGTTATGTCGGCGGCGGAAGAGG
CGGAATCAACGAGGCAAACCTACACCGCGGCTGCCCTGCGGGGGCTCAAG
CGGGCCCGCGTGGCGCTGGAGGAGGCCCTCGACGAGCTCGGCAGATCGAC
CGGGGACGAGCTGGGCCTCGCTCCCCCGGCTTACATGGACCTGCCCTTCC
CGTTCCCGCTTACCTCAGACTCCTCCGATGATAATGAGGCGTTGGCGGGG
GACGGGGTGGAGGGCGAG
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