mRNA_F-serratus_M_contig1338.2514.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1338.2514.1
Unique NamemRNA_F-serratus_M_contig1338.2514.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1338.2514.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.300e-15
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 2 
Query:    5 AMFVDGDGNCMWRSVGKALWDSDQFWPQLKLVVLGWAAANAETLVGDEGVLF 160
            A++V+GDGNC WRS+ KALW +D++W QLKL VL W+A N E LVG+ G LF
Sbjct:  104 ALWVEGDGNCFWRSMAKALWGTDEYWRQLKLAVLAWSAVNVEALVGEGGALF 155
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BLAST of mRNA_F-serratus_M_contig1338.2514.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.430e-15
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 2 
Query:    5 AMFVDGDGNCMWRSVGKALWDSDQFWPQLKLVVLGWAAANAETLVGDEGVLFRCKKFYSQDV 190
            A++V GDGNC WRS+ K LW+SD++W QLKLVVL WAAA+AE LV +  VL      +S D+
Sbjct:    8 ALWVRGDGNCCWRSLAKCLWESDEYWSQLKLVVLAWAAAHAEELVSEGRVLSDFSLHFSDDI 69
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1338.2514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJS4_9PHAE1.300e-1561.54SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K454_9PHAE2.430e-1556.45SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1338contigF-serratus_M_contig1338:249174..249369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size197
Cds size189
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929313.5859697-UTR-F-serratus_M_contig1338:249173..2491801622929313.5859697-UTR-F-serratus_M_contig1338:249173..249180Fucus serratus maleUTRF-serratus_M_contig1338 249174..249180 +
1690962794.5168698-UTR-F-serratus_M_contig1338:249173..2491801690962794.5168698-UTR-F-serratus_M_contig1338:249173..249180Fucus serratus maleUTRF-serratus_M_contig1338 249174..249180 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929313.6045582-CDS-F-serratus_M_contig1338:249180..2493691622929313.6045582-CDS-F-serratus_M_contig1338:249180..249369Fucus serratus maleCDSF-serratus_M_contig1338 249181..249369 +
1690962794.5269163-CDS-F-serratus_M_contig1338:249180..2493691690962794.5269163-CDS-F-serratus_M_contig1338:249180..249369Fucus serratus maleCDSF-serratus_M_contig1338 249181..249369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1338.2514.1prot_F-serratus_M_contig1338.2514.1Fucus serratus malepolypeptideF-serratus_M_contig1338 249181..249369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1338.2514.1

>prot_F-serratus_M_contig1338.2514.1 ID=prot_F-serratus_M_contig1338.2514.1|Name=mRNA_F-serratus_M_contig1338.2514.1|organism=Fucus serratus male|type=polypeptide|length=63bp
MFVDGDGNCMWRSVGKALWDSDQFWPQLKLVVLGWAAANAETLVGDEGVL
FRCKKFYSQDVVQ
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mRNA from alignment at F-serratus_M_contig1338:249174..249369+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1338.2514.1 ID=mRNA_F-serratus_M_contig1338.2514.1|Name=mRNA_F-serratus_M_contig1338.2514.1|organism=Fucus serratus male|type=mRNA|length=196bp|location=Sequence derived from alignment at F-serratus_M_contig1338:249174..249369+ (Fucus serratus male)
GAAAGCTATGTTCGTGGATGGCGACGGAAACTGTATGTGGCGTTCTGTCG
GCAAGGCCTTGTGGGATTCCGACCAGTTCTGGCCCCAGTTAAAGCTTGTG
GTATTAGGATGGGCCGCGGCCAACGCGGAAACACTTGTAGGAGACGAGGG
TGTCCTTTTTCGCTGTAAGAAATTCTACTCCCAGGATGTCGTTCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1338:249174..249369+

>mRNA_F-serratus_M_contig1338.2514.1 ID=mRNA_F-serratus_M_contig1338.2514.1|Name=mRNA_F-serratus_M_contig1338.2514.1|organism=Fucus serratus male|type=CDS|length=378bp|location=Sequence derived from alignment at F-serratus_M_contig1338:249174..249369+ (Fucus serratus male)
ATGTTCGTGGATGGCGACGGAAACTGTATGTGGCGTTCTGTCGGCAAGGC
CTTGTGGGATTCCGACCAGTTCTGGCCCCAGTTAAAGCTTGTGGTATTAG
GATGGGCCGCGGCCAACGCGGAAACACTTGTAGGAGACGAGGGTGTCCTT
TTTCGCTGTAAGAAATTCTACTCCCAGGATGTCGTTCAAATGTTCGTGGA
TGGCGACGGAAACTGTATGTGGCGTTCTGTCGGCAAGGCCTTGTGGGATT
CCGACCAGTTCTGGCCCCAGTTAAAGCTTGTGGTATTAGGATGGGCCGCG
GCCAACGCGGAAACACTTGTAGGAGACGAGGGTGTCCTTTTTCGCTGTAA
GAAATTCTACTCCCAGGATGTCGTTCAA
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