mRNA_F-serratus_M_contig1337.2503.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1337.2503.1 vs. uniprot
Match: A0A6H5L7K0_9PHAE (Ribosomal_L12 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7K0_9PHAE) HSP 1 Score: 214 bits (544), Expect = 4.570e-61 Identity = 118/161 (73.29%), Postives = 134/161 (83.23%), Query Frame = 3
Query: 324 DDHPLASIPDDDGDPGPPPPLDPSIVTGPSPKVLKVMEDIDSLNFVEMAMLIDVFKDKLGLDEVPSLSFGGGDG-FGDEEGGDSAPEAAKEKSTFSVKVTGFGDKAKIKVIKEIRAITGLGLREAKELVESLPQVVKEDLKPEDAESMKAALEGAGAVAEL 803
D++PL + DDDGDPGPPPPLDPSIVT PSPKVL+VM I+SLNFVEMAMLID+FK+KLGLDE+P+LSFGG DG + AP AA EK+ F VKVTGFGDKAKIKVIKE+R ITGLGLREAKE+VESLPQVVKEDLK ++AE+MKA LE GA EL
Sbjct: 139 DENPLGGMVDDDGDPGPPPPLDPSIVTEPSPKVLEVMASIESLNFVEMAMLIDLFKNKLGLDELPTLSFGGADGGXXXXXXXEDAPAAAAEKTIFKVKVTGFGDKAKIKVIKEVRVITGLGLREAKEMVESLPQVVKEDLKEDEAEAMKAKLEAVGATVEL 299
BLAST of mRNA_F-serratus_M_contig1337.2503.1 vs. uniprot
Match: A0A7C1ATE0_9PROT (50S ribosomal protein L7/L12 n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7C1ATE0_9PROT) HSP 1 Score: 101 bits (252), Expect = 1.540e-21 Identity = 62/131 (47.33%), Postives = 85/131 (64.89%), Query Frame = 3
Query: 411 SPKVLKVMEDIDSLNFVEMAMLIDVFKDKLGLDEVPSLSFGGGDGFGDEEGGDSAPEAAKEKSTFSVKVTGFGDKAKIKVIKEIRAITGLGLREAKELVESLPQVVKEDLKPEDAESMKAALEGAGAVAEL 803
S K+ K+++ + L +E++ L+ +DK G+ + F G G +A EA +E+S FSV +T FG+K KI+VIKE+RA+T LGL+EAKELVES P VKE L EDAE++K LE AGA AEL
Sbjct: 33 SSKLQKIIDTVSELTVLELSELVTALEDKFGVTAAAPMGFAVGPG-------QAAAEAEEEQSEFSVILTSFGEK-KIQVIKEVRAVTDLGLKEAKELVESAPVPVKEGLSKEDAEAVKVKLEAAGASAEL 155
BLAST of mRNA_F-serratus_M_contig1337.2503.1 vs. uniprot
Match: A0A7S3PWR8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWR8_9STRA) HSP 1 Score: 103 bits (257), Expect = 2.730e-21 Identity = 57/131 (43.51%), Postives = 85/131 (64.89%), Query Frame = 3
Query: 411 SPKVLKVMEDIDSLNFVEMAMLIDVFKDKLGLDEVPSLSFGGGDGFGDEEGGDSAPEAAKEKSTFSVKVTGFGDKAKIKVIKEIRAITGLGLREAKELVESLPQVVKEDLKPEDAESMKAALEGAGAVAEL 803
SP + ++ ++I ++N +E+ L+D D L++ F GG G G E E +EK+ F +K+TGF K+KIKVIKE+RA++GLGL+EAKE+VE P+ +K D+K E+AE +KA LE GA E+
Sbjct: 115 SPLLHELADEIVTMNMLEVKELVDRIGDHFDLEDGDDFEFSGGAGEGAAE-----EEVKEEKTAFDLKLTGFDAKSKIKVIKEVRAMSGLGLKEAKEMVEGAPKTIKSDIKMEEAEELKAKLEAVGATVEI 240
BLAST of mRNA_F-serratus_M_contig1337.2503.1 vs. uniprot
Match: A0A7S2SJD4_9STRA (Hypothetical protein n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SJD4_9STRA) HSP 1 Score: 102 bits (254), Expect = 4.670e-21 Identity = 62/136 (45.59%), Postives = 89/136 (65.44%), Query Frame = 3
Query: 411 SPKVLKVMEDIDSLNFVEMAMLIDVFKDKLGL---DEVPSLSFGGGDGFGDEEGGDSAPEAAKE--KSTFSVKVTGFGDKAKIKVIKEIRAITGLGLREAKELVESLPQVVKEDLKPEDAESMKAALEGAGAVAEL 803
SP+V ++ + + L+FVE+ +L ++ DK+G+ D + S GGG G SA E KE K+ F +K+TG+ K+KIKVIKE+R+ITGLGLR+AK +VE P VVK+D+K E+AE +K LE GA E+
Sbjct: 93 SPRVKEIFQKVLQLDFVEIHLLGELVYDKMGMSISDAMRQASVGGG-----SAAGASAKEETKEEVKTAFDLKLTGWDAKSKIKVIKEVRSITGLGLRDAKAMVEGFPNVVKKDIKMEEAEELKKKLESIGATVEI 223
BLAST of mRNA_F-serratus_M_contig1337.2503.1 vs. uniprot
Match: A0A3M6VRL1_9STRA (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VRL1_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.840e-20 Identity = 62/135 (45.93%), Postives = 85/135 (62.96%), Query Frame = 3
Query: 411 SPKVLKVMEDIDSLNFVEMAMLIDVFKDKLGLDEVP-SLSFGGGDGFGDEEGGDSAP---EAAKEKSTFSVKVTGFGDKAKIKVIKEIRAITGLGLREAKELVESLPQVVKEDLKPEDAESMKAALEGAGAVAEL 803
+PKV V++ I LN +E+A L + K G+ E + GGG GG++AP E +EK+ F VK+ F K+KIKVIKE+RAITGLGL+EAKELVE P +K+D+K E+A+ + L+ GAV EL
Sbjct: 50 TPKVQTVLDQILELNMIEIAELSHAIQTKFGIAESAFQVGMGGG------AGGNAAPAAEEPKEEKTAFDVKLASFDAKSKIKVIKEVRAITGLGLKEAKELVEGAPSTLKKDVKKEEADELIEKLKAVGAVVEL 178
BLAST of mRNA_F-serratus_M_contig1337.2503.1 vs. uniprot
Match: A0A8K1FI50_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI50_PYTOL) HSP 1 Score: 99.0 bits (245), Expect = 2.150e-20 Identity = 63/134 (47.01%), Postives = 86/134 (64.18%), Query Frame = 3
Query: 411 SPKVLKVMEDIDSLNFVEMAMLIDVFKDKLGLDEVPSLSFGGGDGFGDEEGGDSAP---EAAKEKSTFSVKVTGFGDKAKIKVIKEIRAITGLGLREAKELVESLPQVVKEDLKPEDAESMKAALEGAGAVAEL 803
+PKV V++ I LN VE+ L + K +P +F G G GG +AP E +EK+ F VK+ F K+KIKVIKE+RAITGLGL+EAKELVE +P V+K+D+K E+AE++ A L+ GAV E+
Sbjct: 47 TPKVQNVLDQILELNMVEIFELSGAIQQKF---NIPDAAFAMGAG-----GGAAAPAAEEVKEEKTQFDVKLASFDAKSKIKVIKEVRAITGLGLKEAKELVEGVPSVLKKDVKKEEAEALIAQLKEVGAVLEM 172
BLAST of mRNA_F-serratus_M_contig1337.2503.1 vs. uniprot
Match: A0A432IKQ8_9FIRM (50S ribosomal protein L7/L12 n=2 Tax=Bacteria TaxID=2 RepID=A0A432IKQ8_9FIRM) HSP 1 Score: 97.8 bits (242), Expect = 2.370e-20 Identity = 64/136 (47.06%), Postives = 82/136 (60.29%), Query Frame = 3
Query: 408 PSPKVLKVMEDIDSLNFVEMAMLIDVFKDKLGLDEVPSLSFG----GGDGFGDEEGGDSAPEAAKEKSTFSVKVTGFGDKAKIKVIKEIRAITGLGLREAKELVESLPQVVKEDLKPEDAESMKAALEGAGAVAEL 803
PS KV +ME I LN +E+ L DV +D+ G+ V ++ G G DG G E A E++ F V +T GDK KI VIK +R+ITGLGL+EAKE+VES P+ +KE EDAE +K LE AGA EL
Sbjct: 14 PSEKVGSIMESIKVLNVMELVELKDVLEDEFGVSAVAAMPMGMPAAGADGAG-------GAEEAAEQTEFDVILTSIGDK-KIPVIKAVRSITGLGLKEAKEMVESAPKAIKEGASKEDAEKVKKELEDAGASVEL 141
BLAST of mRNA_F-serratus_M_contig1337.2503.1 vs. uniprot
Match: A0A5D6YIZ0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YIZ0_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 3.510e-20 Identity = 59/131 (45.04%), Postives = 81/131 (61.83%), Query Frame = 3
Query: 411 SPKVLKVMEDIDSLNFVEMAMLIDVFKDKLGLDEVPSLSFGGGDGFGDEEGGDSAPEAAKEKSTFSVKVTGFGDKAKIKVIKEIRAITGLGLREAKELVESLPQVVKEDLKPEDAESMKAALEGAGAVAEL 803
SPKV V++ I LN +E+ L ++K +P +F G G E +EK+ F VK+ F K+KIKVIKE+RAITGLGL+EAKELVE P V+K+D+K ++AE++ A L+ GAV EL
Sbjct: 52 SPKVQTVLDQILDLNMIEIVELSSAIQEKF---NIPESAFSGNFGGXXXXXXXXXXEVKEEKTQFDVKLASFDAKSKIKVIKEVRAITGLGLKEAKELVEGAPSVLKKDVKKDEAEALVAQLKEVGAVVEL 179
BLAST of mRNA_F-serratus_M_contig1337.2503.1 vs. uniprot
Match: A0A7S1EUI7_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EUI7_9RHOD) HSP 1 Score: 99.0 bits (245), Expect = 8.200e-20 Identity = 63/136 (46.32%), Postives = 90/136 (66.18%), Query Frame = 3
Query: 411 SPKVLKVMEDIDSLNFVEMAMLIDVFKDKLGLDEVPSLSFGGGDGF--GDEEGGDSAPEAA---KEKSTFSVKVTGFGDKAKIKVIKEIRAITGLGLREAKELVESLPQVVKEDLKPEDAESMKAALEGAGAVAEL 803
SPKV K++++I LN +E+ L KD+LGL ++PS+ GG + D AP AA +EK++F+V++TGF KI +IKEIR +TGLGL+EAK LV+S P VVKE+L +DA +++ L AGA +EL
Sbjct: 93 SPKVSKLLDEIVQLNMLEVKELSSGLKDRLGLADLPSMPMGGMMAMPAAPAQAAD-APAAAPKVEEKTSFTVRLTGFDAAKKIGIIKEIRTLTGLGLKEAKALVDSAPVVVKENLTKDDAAALQEKLTAAGATSEL 227
BLAST of mRNA_F-serratus_M_contig1337.2503.1 vs. uniprot
Match: A0A3B0TTP6_9ZZZZ (LSU ribosomal protein L7p/L12p (P1/P2) n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0TTP6_9ZZZZ) HSP 1 Score: 95.5 bits (236), Expect = 9.270e-20 Identity = 58/126 (46.03%), Postives = 80/126 (63.49%), Query Frame = 3
Query: 426 KVMEDIDSLNFVEMAMLIDVFKDKLGLDEVPSLSFGGGDGFGDEEGGDSAPEAAKEKSTFSVKVTGFGDKAKIKVIKEIRAITGLGLREAKELVESLPQVVKEDLKPEDAESMKAALEGAGAVAEL 803
K+++D+ SL +E + L + +DK G+ ++ GG A EAA+EK+ F V +T FG+K KI VIKE+RAITGLGL+EAK+LVE P+ +KE + DAE +K LEGAGA EL
Sbjct: 6 KLVDDLSSLTVLEASELSKLLEDKWGVSAAAPVAVAAA-------GGGDAGEAAEEKTEFDVILTSFGEK-KINVIKEVRAITGLGLKEAKDLVEGAPKPIKEGIAKADAEEIKTKLEGAGASVEL 123 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1337.2503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1337.2503.1 >prot_F-serratus_M_contig1337.2503.1 ID=prot_F-serratus_M_contig1337.2503.1|Name=mRNA_F-serratus_M_contig1337.2503.1|organism=Fucus serratus male|type=polypeptide|length=202bp MPDDGHATGEKTGGEAPTPSVEASSVGADVKQDETDGVQGDDHPLASIPDback to top mRNA from alignment at F-serratus_M_contig1337:159701..163714- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1337.2503.1 ID=mRNA_F-serratus_M_contig1337.2503.1|Name=mRNA_F-serratus_M_contig1337.2503.1|organism=Fucus serratus male|type=mRNA|length=4014bp|location=Sequence derived from alignment at F-serratus_M_contig1337:159701..163714- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1337:159701..163714- >mRNA_F-serratus_M_contig1337.2503.1 ID=mRNA_F-serratus_M_contig1337.2503.1|Name=mRNA_F-serratus_M_contig1337.2503.1|organism=Fucus serratus male|type=CDS|length=1212bp|location=Sequence derived from alignment at F-serratus_M_contig1337:159701..163714- (Fucus serratus male)back to top |