mRNA_F-serratus_M_contig1336.2497.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1336.2497.1
Unique NamemRNA_F-serratus_M_contig1336.2497.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1336.2497.1 vs. uniprot
Match: A0A6H5KHR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR5_9PHAE)

HSP 1 Score: 265 bits (676), Expect = 2.240e-81
Identity = 130/180 (72.22%), Postives = 147/180 (81.67%), Query Frame = 1 
Query:  115 KKKPACPGKSQPRPLGRFSHASAYIESSGDSDSVHALFVFGGRENVDVLVPLGDLWMFDMSKMRWSEITSGSKK-APVNRFAHSLTVWQGGAGDGVASLVVFGGETITRTGQVAYMNDVWLYTPHTGAWREVSRSDCQQGASGIAKGGYWTAAIAFATMLVLLFLVQRVLHCICPHYVPP 651
            KKK  CPG S  RPLGR +HASAYIES   +D+++ALF+FGGREN+D L PLGDLWMFD + MRW EIT  S K AP NRF HSLTVWQGG GDGVASLVVFGGETITRTGQ  +MNDVWLYTP TGAWR+VSRSDC++GASGIA+GG WTA IA A+MLVL+ +VQ  LH +CP Y PP
Sbjct:  432 KKKAVCPGVSTSRPLGRHAHASAYIESK--TDNMNALFIFGGRENMDELTPLGDLWMFDFTTMRWREITPDSNKPAPCNRFYHSLTVWQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWRQVSRSDCKEGASGIARGGNWTALIALASMLVLVVVVQCFLHRVCPQYQPP 609
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BLAST of mRNA_F-serratus_M_contig1336.2497.1 vs. uniprot
Match: D7G1X6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X6_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 9.210e-54
Identity = 92/122 (75.41%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:  154 PLGRFSHASAYIESSGDSDSVHALFVFGGRENVDVLVPLGDLWMFDMSKMRWSEITSGSKK-APVNRFAHSLTVWQGGAGDGVASLVVFGGETITRTGQVAYMNDVWLYTPHTGAWREVSRS 516
            P  R  HASAYIES   +D+++ALF+FGGREN+D L PLGDLWMFD + MRWSEIT  SKK AP NRF HSLTVWQGG GDGVASLVVFGGETITRTGQ  +MNDVWLYTP TGAWREV  S
Sbjct:  295 PALRHGHASAYIESK--TDNMNALFIFGGRENMDDLTPLGDLWMFDFTTMRWSEITPDSKKPAPCNRFYHSLTVWQGGVGDGVASLVVFGGETITRTGQTVFMNDVWLYTPQTGAWREVRSS 414
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BLAST of mRNA_F-serratus_M_contig1336.2497.1 vs. uniprot
Match: UPI00192F711E (multiple epidermal growth factor-like domains protein 8 n=1 Tax=Crotalus tigris TaxID=88082 RepID=UPI00192F711E)

HSP 1 Score: 60.1 bits (144), Expect = 6.810e-7
Identity = 44/138 (31.88%), Postives = 69/138 (50.00%), Query Frame = 1 
Query:  163 RFSHASAYIESSGDSDSVHALFVFGGRENVDVLVPLGDLWMFDMSKMRWSE-ITSGSKKAPVNRFAHSLTVWQGGAGDGVASLVVFGGETITRTGQVAYMNDVWLYTPHTGAWREVSRSDCQQGASGIAKGGYWTAAI 573
            R + A A++ S+G       L++FGG   +D+   LGDL  ++ +   W + + S S   P  R +H+   W+G       SL++FGGE  T        NDVW+Y P  G WRE+   +  +   G+A  G+ +A I
Sbjct:  228 RTAAAGAFLPSTG------GLYIFGG---LDLNTALGDLVFYNFTTNTWHQRVLSPS---PTARHSHTAVAWEG-------SLILFGGELSTGF----LTNDVWMYLPREGYWRELVPVNTTKFPPGLA--GHASAVI 340
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BLAST of mRNA_F-serratus_M_contig1336.2497.1 vs. uniprot
Match: A0A1V9ZFM0_9STRA (RING-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZFM0_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.150e-6
Identity = 24/78 (30.77%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:  274 DLWMFDMSKMRWSEITSGSKKAPVNRFAHSLTVWQGGAGDGVASLVVFGGETITRTGQVAYMNDVWLYTPHTGAWREV 507
            D+W FD +  RW+++   +K+ P  RF+H  ++ +    +GV  + +FGG  +T+    A ++D+WL++  T  WR++
Sbjct:  189 DIWTFDYTTKRWTQLLIAAKRVPPPRFSHVASLVRV---NGVDHMAIFGGRQLTKDDGWALLDDLWLFSFETHVWRKL 263
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1336.2497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KHR5_9PHAE2.240e-8172.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1X6_ECTSI9.210e-5475.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI00192F711E6.810e-731.88multiple epidermal growth factor-like domains prot... [more]
A0A1V9ZFM0_9STRA3.150e-630.77RING-type domain-containing protein n=1 Tax=Achlya... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1336contigF-serratus_M_contig1336:137615..141922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue2.3e-07
Seed eggNOG ortholog112098.XP_008611722.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nitrile biosynthetic process
EggNOG OGsKOG0379@1,KOG0379@2759,KOG0800@1,KOG0800@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size658
Cds size657
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1336.2497.1prot_F-serratus_M_contig1336.2497.1Fucus serratus malepolypeptideF-serratus_M_contig1336 137616..141922 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929310.874354-CDS-F-serratus_M_contig1336:137615..1377681622929310.874354-CDS-F-serratus_M_contig1336:137615..137768Fucus serratus maleCDSF-serratus_M_contig1336 137616..137768 -
1690962793.2743387-CDS-F-serratus_M_contig1336:137615..1377681690962793.2743387-CDS-F-serratus_M_contig1336:137615..137768Fucus serratus maleCDSF-serratus_M_contig1336 137616..137768 -
1622929311.1271868-CDS-F-serratus_M_contig1336:138636..1387711622929311.1271868-CDS-F-serratus_M_contig1336:138636..138771Fucus serratus maleCDSF-serratus_M_contig1336 138637..138771 -
1690962793.2842686-CDS-F-serratus_M_contig1336:138636..1387711690962793.2842686-CDS-F-serratus_M_contig1336:138636..138771Fucus serratus maleCDSF-serratus_M_contig1336 138637..138771 -
1622929311.1380062-CDS-F-serratus_M_contig1336:139716..1398041622929311.1380062-CDS-F-serratus_M_contig1336:139716..139804Fucus serratus maleCDSF-serratus_M_contig1336 139717..139804 -
1690962793.2917306-CDS-F-serratus_M_contig1336:139716..1398041690962793.2917306-CDS-F-serratus_M_contig1336:139716..139804Fucus serratus maleCDSF-serratus_M_contig1336 139717..139804 -
1622929311.1537426-CDS-F-serratus_M_contig1336:140426..1406611622929311.1537426-CDS-F-serratus_M_contig1336:140426..140661Fucus serratus maleCDSF-serratus_M_contig1336 140427..140661 -
1690962793.298988-CDS-F-serratus_M_contig1336:140426..1406611690962793.298988-CDS-F-serratus_M_contig1336:140426..140661Fucus serratus maleCDSF-serratus_M_contig1336 140427..140661 -
1622929311.1681876-CDS-F-serratus_M_contig1336:141876..1419221622929311.1681876-CDS-F-serratus_M_contig1336:141876..141922Fucus serratus maleCDSF-serratus_M_contig1336 141877..141922 -
1690962793.3110247-CDS-F-serratus_M_contig1336:141876..1419221690962793.3110247-CDS-F-serratus_M_contig1336:141876..141922Fucus serratus maleCDSF-serratus_M_contig1336 141877..141922 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1336.2497.1

>prot_F-serratus_M_contig1336.2497.1 ID=prot_F-serratus_M_contig1336.2497.1|Name=mRNA_F-serratus_M_contig1336.2497.1|organism=Fucus serratus male|type=polypeptide|length=219bp
RLIKPESDADADACPTAPGEKSAGQHRHLSSDGKGSSGKKKPACPGKSQP
RPLGRFSHASAYIESSGDSDSVHALFVFGGRENVDVLVPLGDLWMFDMSK
MRWSEITSGSKKAPVNRFAHSLTVWQGGAGDGVASLVVFGGETITRTGQV
AYMNDVWLYTPHTGAWREVSRSDCQQGASGIAKGGYWTAAIAFATMLVLL
FLVQRVLHCICPHYVPPSA
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mRNA from alignment at F-serratus_M_contig1336:137615..141922-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1336.2497.1 ID=mRNA_F-serratus_M_contig1336.2497.1|Name=mRNA_F-serratus_M_contig1336.2497.1|organism=Fucus serratus male|type=mRNA|length=4308bp|location=Sequence derived from alignment at F-serratus_M_contig1336:137615..141922- (Fucus serratus male)
CGTTTGATCAAGCCCGAAAGCGACGCTGACGCTGATGCCTGCCCAAGTAA
GGAGGCGTTTTACCAAAATTAAAAGGCGTTTTTGTTGTTTTTGGGCGTGT
GGGGATTGGGGATCAACGCTAACGGCTGTGCAGGGAAAAACATGTTTTTG
GTGTTATTTTATTTTGTATTATTTTTCAAGAAAAAGCTCGAAGAGCGACA
CCGACAATTATTATTTATTATTATTATTATTTACGAATATGGAGGCTTTT
TTTTTCATTTTTTCTCTGCTTGTTCCCCCTTTTATTTTATTTAACTCTTT
AGTTTTGGGTCAAATAAGCACCCGAGAGCGCCAGACGCTGACGCCTGCAC
AAAAAAGGAGGCGTTTCTTTCTATTTATCTGTGTATGTATATATATATAT
CTACATTTATATATGATTGTTTTTTTCCAGTTGTTTTTTGTTGCCACGAA
ACAAAATATTTTGTGTTGTTTTGTCGAAGGCGACACGATATGTACATGTA
TTAATATATACCAGGTACTAATAGTATAAATCATGGAGTAAAACGCCCCT
TCGGTGGAAGGAAAACGCTCACCCAACACCCCCACACCTCTCATGCCTAC
AAGAAAACGCCCTACACAGGTACATGCTGCGGTTCTGGACGAAAATCCTG
TGGAGGGATCTCGACAGAATGTTATCCCTGTTTAATCTGCAAAGCCATTA
CATACTGCGGACAGAGTACCTTGCGTTACCTAGGGTGTGTGTTTTTTTTA
GTACCCCGCTTACGCGGCAGTTTCCGCTGTGACCCCTGTGTGCAGTTTCA
CAGCAGCTTTGTCTTGTGGGTGAAAACACGGCCGTTTTCTCCTGTGGGTG
CTTTGCTACAACGAGGCTGCGTGTGCCTGACTGAACACTTTTGGCGCATC
GTGTACAAGAGAAGAGCTGCCGTGAGGGAGAGATATAGCTATATGCCGTT
GTTCCAATAATTTTGCCTCCCCACACCGCGTTTGGACGCGGAATGCATCC
AAACGGAACGTCAGTAGAATGATGAATGAAAGAGACATGGATACCGATTC
TGGTACATGTATCTGTTACTGTCTTGTCCGTTTATCGAAACCGGCCATTC
TCAACTGACTGGTTCGGGTATACTCTTGCACCAGATACTTGACCTTCGAT
ACATGACCCGCCCTTACCCTCACCCTCACCCTCACCCCCCCATTCCTTCT
CTGGTCTCTTGTGGTCTCCTATTATCGTTTTTTGCTCCGTGTCGCATACC
GCATACCGCAGCCGCCCCGGGAGAAAAGAGCGCCGGCCAACACCGTCACC
TCTCAAGCGACGGCAAGGGAAGCAGCGGCAAGAAAAAGCCGGCGTGCCCG
GGGAAAAGCCAGCCGCGTCCGCTAGGTCGGTTCTCCCACGCCTCCGCGTA
CATCGAGTCCAGCGGCGACTCTGACTCTGTCCACGCGCTCTTCGTCTTCG
GAGGCCGAGAGAACGTGGACGTGCTCGTGCCGCTGGGGGACCTTTGGTGA
TGACGCGCGGGGGGGTGGGGGGGGTACGCAGAGTATATAAAGTACAAAGC
ACTGATAGTATGTTGTTATTTGGCCGTCTGTCTATGTCCCATTTATTACT
TCGGCTGTTTCTTATTCATGTGTTTATCCACCCCGCCCGCCCATGCCCAT
TCAGCCATCTAGTACTATAACTGTAACTATAACTTTAACTGTAACTGTAA
CTGTAACTCTTCCTGTAACTATAACTGTAACTGTAACTGTAACTGTAACT
CTAAGTCTAACTGTAACTGTAAATATAACTGTAACTCTTACTATAACTTT
TACTGTAACTGTAACTGCGGTCAACAGGCGAAATGGAGAAAAGCCGCAAC
ACCTCTCCCGGCTGCCTTGCTCGTGTTGTGGTGTGTTGTGTTGTGTTTTG
ATTGCTGTGTATTACTTTTTGTACTTTTTCTGCCGTTTTGGCCTTGAAAT
GAAAACGGCAAACTTCGAAAAAAAGTTGTGGATTTTGGTATTTTTGCCCT
CCGTCGTATGTTCGAATCATGGGTTCGTTTGAGGGGGGGGCGGGGGCGGG
GAGGCGATTGTTTTCTCTAATCAGCGTGCGCCCGTGCGTCTGCATGTGGT
GTTCGTTTTCTTTTAAAGGATGTTCGACATGAGCAAAATGCGTTGGAGCG
AGATCACGTCCGGGTCGAAGAAGGCTCCGGTCAACCGATTTGCCCACTCC
CTTACGGTGGGTTGATGTGGAAGATTCTCGTCTATTGAATAGTCTCGTCT
AGTCTGGCCTGATCTACCCCGATGGGATCTACATCTGGATTTAGAGCTCG
TCGCTTGTTCTCTCTTGAGGCCGTCGCGTTTACAGCGATGATACGTACTC
TATGCCTGCCCCCCCCCCTCTTGAGTTCGTTCGGAGGCGTGTTTCGTCAA
TGCAGATTATATCGTTGGATGCTAGAGGGAAGCGTGGATGTGGTGGCAAA
CATGACGTGCTTATGAAATGGTTTAAAATAGTATCTTGATGCAAAAATGA
TTTTGTCATGATAAAAAAAAGCTATAGCTGTACAACTATTAATACTGTAG
TGTAGTGAAATACTTAACGAGAAAAGCCCAAAACAACCGCTATTAATAGG
ACTCGAGTCGTCAGTTATATTTGATGCAGAAGTGCCCAGCAATCGGAAAA
CAAATGATTTGAATTATATATATATATATATATGATTCCCAAATGATGAT
AGCAACCAATGTGGTGATTTTGTTAATATAAAGAACTATTTAGTAACTGT
ACCCACCTGAAACCTCTCGATGCGTTCCTAAGGTTAGCGTATGCAGAAGT
TTTCAGAATAAAAAATGAAATGCCACGATTGCAAAAAAATCAGCCAGATT
TTTTTTTGGGGGGGTGGCGCGGTAGTACTGTACTATTTCAGTAATACAAC
AGTAGGACAGTGCTGTAACGTTTGAGCGTGCGCCGCGGCTGATGGTAGGG
GGAAAGGGCGCTACCCGACTCCAACTCTCTATGAGGCATGGGTAAGGGTG
TATATGCGTGCGTGTGTGTGTTTTGTGTCTAGAGCCGTCACGCCACACGG
GGAGCCGCTCTTTTCACACGCCAACCACGCGGCCGCCGCCTGCAGACGGG
CGGAAACCTTACGCCCGTGCACCTGTGGTACGACTGCGCCCCTCGCCGCA
GGTTTGGCAGGGTGGTGCGGGGGACGGTGTCGCTTCGCTCGTAGTGTTTG
GGGGCGAGACCATCACGAGGACGGGCCAGGTCGCCTACATGAACGACGTC
TGGCTTTACACCCCCCACACGGGCGCCTGGCGCGAGGTGGGTTCCGAAAT
CTGTATATCTCGTCACAGTTTACACCTGCTGTGCTCTCTCTGCCTTGGCA
CGAGTACTGAGATAACCACCCCTCTCCCTCGATCTCGACCGACATGGTCA
AATGTTTTTTAGCTTTCGTACATATTTTTAAGTCATAAGTTGAAATATTT
ACCAGGTATAAATTTCCACTTGCGCCCATATCCTGTAAAAGGGCTCTCTA
TCATAGTTGGGTATGAATTACGTCATGATCCTCTCGATCCTGTAACATGC
GTTGTTCGTCACCTGGTTTTATATTGTTTATTGAGGGGGTGGGGGGAGGA
AACCGTCGGGGGTGGATAAGCAAGTATAGCCGATGGGCTGGTGTCGATTG
TGTATTTGTAGCCGATCCTGCGAGGAAGCAAACGCTTATGCCCCCTCCCC
CGCGCGCCGCGAACTGCGTTATCGTGTGTACCTCGTAGCTTGTAGCCAAT
TAATATGAGCGACGTGCGATCGATACCTCATGCCTTTGACATCAAAGGCA
GAAAGTCTCCCTACAAAAAGCACATCAAGAATGTCTGTTGTGAGGGCTGT
TACATATGAAAGACCTGATTATATATATATGTGTATATATATTCCCGGCG
TGCGATCGATGCCTCATGCCTTTGGCATCAAAGGCAAAAAGTCTGCCTAC
AAAAAGAACGTCAAGAATGTCTGTTGTGAGGGCTGTTACAGGTGAAAGAC
CTAATATATGCTCATATATATATATATAGTCCCGGCCTCGTCAATTCTCG
AATCTCGTCGATACTGTTGTTATTGCCCCCCCATCGATACTGTTATTGCT
GTTATGATTCGGATCAGCACCCCCTCAAAAAAACAACCTTGTCCGCGACC
CCAGGTCAGCCGATCAGACTGCCAACAGGGCGCATCCGGCATCGCGAAAG
GGGGTTACTGGACGGCAGCGATTGCATTTGCCACGATGCTTGTCCTCCTC
TTTTTGGTGCAACGCGTGCTGCACTGTATTTGTCCTCACTACGTGCCACC
CTCCGCGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1336:137615..141922-

>mRNA_F-serratus_M_contig1336.2497.1 ID=mRNA_F-serratus_M_contig1336.2497.1|Name=mRNA_F-serratus_M_contig1336.2497.1|organism=Fucus serratus male|type=CDS|length=1314bp|location=Sequence derived from alignment at F-serratus_M_contig1336:137615..141922- (Fucus serratus male)
CGTTTGATCAAGCCCGAAAGCGACGCTGACGCTGATGCCTGCCCAACGTT
TGATCAAGCCCGAAAGCGACGCTGACGCTGATGCCTGCCCAACCGCCCCG
GGAGAAAAGAGCGCCGGCCAACACCGTCACCTCTCAAGCGACGGCAAGGG
AAGCAGCGGCAAGAAAAAGCCGGCGTGCCCGGGGAAAAGCCAGCCGCGTC
CGCTAGGTCGGTTCTCCCACGCCTCCGCGTACATCGAGTCCAGCGGCGAC
TCTGACTCTGTCCACGCGCTCTTCGTCTTCGGAGGCCGAGAGAACGTGGA
CGTGCTCGTGCCGCTGGGGGACCTTTGCCGCCCCGGGAGAAAAGAGCGCC
GGCCAACACCGTCACCTCTCAAGCGACGGCAAGGGAAGCAGCGGCAAGAA
AAAGCCGGCGTGCCCGGGGAAAAGCCAGCCGCGTCCGCTAGGTCGGTTCT
CCCACGCCTCCGCGTACATCGAGTCCAGCGGCGACTCTGACTCTGTCCAC
GCGCTCTTCGTCTTCGGAGGCCGAGAGAACGTGGACGTGCTCGTGCCGCT
GGGGGACCTTTGGATGTTCGACATGAGCAAAATGCGTTGGAGCGAGATCA
CGTCCGGGTCGAAGAAGGCTCCGGTCAACCGATTTGCCCACTCCCTTACG
GATGTTCGACATGAGCAAAATGCGTTGGAGCGAGATCACGTCCGGGTCGA
AGAAGGCTCCGGTCAACCGATTTGCCCACTCCCTTACGGTTTGGCAGGGT
GGTGCGGGGGACGGTGTCGCTTCGCTCGTAGTGTTTGGGGGCGAGACCAT
CACGAGGACGGGCCAGGTCGCCTACATGAACGACGTCTGGCTTTACACCC
CCCACACGGGCGCCTGGCGCGAGGTTTGGCAGGGTGGTGCGGGGGACGGT
GTCGCTTCGCTCGTAGTGTTTGGGGGCGAGACCATCACGAGGACGGGCCA
GGTCGCCTACATGAACGACGTCTGGCTTTACACCCCCCACACGGGCGCCT
GGCGCGAGGTCAGCCGATCAGACTGCCAACAGGGCGCATCCGGCATCGCG
AAAGGGGGTTACTGGACGGCAGCGATTGCATTTGCCACGATGCTTGTCCT
CCTCTTTTTGGTGCAACGCGTGCTGCACTGTATTTGTCCTCACTACGTGC
CACCCTCCGCGGTCAGCCGATCAGACTGCCAACAGGGCGCATCCGGCATC
GCGAAAGGGGGTTACTGGACGGCAGCGATTGCATTTGCCACGATGCTTGT
CCTCCTCTTTTTGGTGCAACGCGTGCTGCACTGTATTTGTCCTCACTACG
TGCCACCCTCCGCG
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