mRNA_F-serratus_M_contig1336.2495.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1336.2495.1
Unique NamemRNA_F-serratus_M_contig1336.2495.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1336.2495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1336contigF-serratus_M_contig1336:91242..91618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size377
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929310.4328732-UTR-F-serratus_M_contig1336:91241..913091622929310.4328732-UTR-F-serratus_M_contig1336:91241..91309Fucus serratus maleUTRF-serratus_M_contig1336 91242..91309 +
1690962792.951729-UTR-F-serratus_M_contig1336:91241..913091690962792.951729-UTR-F-serratus_M_contig1336:91241..91309Fucus serratus maleUTRF-serratus_M_contig1336 91242..91309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929310.4467144-CDS-F-serratus_M_contig1336:91309..916181622929310.4467144-CDS-F-serratus_M_contig1336:91309..91618Fucus serratus maleCDSF-serratus_M_contig1336 91310..91618 +
1690962792.9624715-CDS-F-serratus_M_contig1336:91309..916181690962792.9624715-CDS-F-serratus_M_contig1336:91309..91618Fucus serratus maleCDSF-serratus_M_contig1336 91310..91618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1336.2495.1prot_F-serratus_M_contig1336.2495.1Fucus serratus malepolypeptideF-serratus_M_contig1336 91310..91618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1336.2495.1

>prot_F-serratus_M_contig1336.2495.1 ID=prot_F-serratus_M_contig1336.2495.1|Name=mRNA_F-serratus_M_contig1336.2495.1|organism=Fucus serratus male|type=polypeptide|length=103bp
MLLLPLGEGGKGSGSAEGGVMTVRASEDTRAASRARSACDSMLNPGDADS
GDLDLDAFQAALRESLSVAGESSPSTSSRRATWVRRSARSVSANPSASPP
ASS
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mRNA from alignment at F-serratus_M_contig1336:91242..91618+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1336.2495.1 ID=mRNA_F-serratus_M_contig1336.2495.1|Name=mRNA_F-serratus_M_contig1336.2495.1|organism=Fucus serratus male|type=mRNA|length=377bp|location=Sequence derived from alignment at F-serratus_M_contig1336:91242..91618+ (Fucus serratus male)
CACCGTGACCCTCAACCTGCACCTTTGTCCCCTGCTGTCCTCCCAAGGTA
GCGGTTGTTGTCTGGTCGATGTTGCTGTTGCCCCTAGGCGAGGGAGGCAA
GGGAAGCGGGAGCGCCGAGGGAGGGGTGATGACCGTCCGCGCCAGTGAGG
ACACGAGGGCCGCCAGCCGGGCGAGGAGTGCTTGCGATTCAATGCTCAAC
CCCGGCGACGCCGACTCCGGTGACCTCGACCTCGACGCCTTCCAGGCCGC
TCTACGAGAGTCACTCTCCGTGGCGGGAGAAAGCTCACCAAGCACCTCTT
CGAGAAGAGCTACATGGGTTCGTCGCAGCGCTCGGAGCGTGTCGGCGAAT
CCCTCTGCGTCTCCACCAGCGTCCTCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1336:91242..91618+

>mRNA_F-serratus_M_contig1336.2495.1 ID=mRNA_F-serratus_M_contig1336.2495.1|Name=mRNA_F-serratus_M_contig1336.2495.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig1336:91242..91618+ (Fucus serratus male)
ATGTTGCTGTTGCCCCTAGGCGAGGGAGGCAAGGGAAGCGGGAGCGCCGA
GGGAGGGGTGATGACCGTCCGCGCCAGTGAGGACACGAGGGCCGCCAGCC
GGGCGAGGAGTGCTTGCGATTCAATGCTCAACCCCGGCGACGCCGACTCC
GGTGACCTCGACCTCGACGCCTTCCAGGCCGCTCTACGAGAGTCACTCTC
CGTGGCGGGAGAAAGCTCACCAAGCACCTCTTCGAGAAGAGCTACATGGG
TTCGTCGCAGCGCTCGGAGCGTGTCGGCGAATCCCTCTGCGTCTCCACCA
GCGTCCTCCATGTTGCTGTTGCCCCTAGGCGAGGGAGGCAAGGGAAGCGG
GAGCGCCGAGGGAGGGGTGATGACCGTCCGCGCCAGTGAGGACACGAGGG
CCGCCAGCCGGGCGAGGAGTGCTTGCGATTCAATGCTCAACCCCGGCGAC
GCCGACTCCGGTGACCTCGACCTCGACGCCTTCCAGGCCGCTCTACGAGA
GTCACTCTCCGTGGCGGGAGAAAGCTCACCAAGCACCTCTTCGAGAAGAG
CTACATGGGTTCGTCGCAGCGCTCGGAGCGTGTCGGCGAATCCCTCTGCG
TCTCCACCAGCGTCCTCC
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