mRNA_F-serratus_M_contig1335.2491.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1335.2491.1
Unique NamemRNA_F-serratus_M_contig1335.2491.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1335.2491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1335contigF-serratus_M_contig1335:38559..38883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size326
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929310.1274395-CDS-F-serratus_M_contig1335:38558..388611622929310.1274395-CDS-F-serratus_M_contig1335:38558..38861Fucus serratus maleCDSF-serratus_M_contig1335 38559..38861 +
1690962792.8793077-CDS-F-serratus_M_contig1335:38558..388611690962792.8793077-CDS-F-serratus_M_contig1335:38558..38861Fucus serratus maleCDSF-serratus_M_contig1335 38559..38861 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929310.1413724-UTR-F-serratus_M_contig1335:38861..388831622929310.1413724-UTR-F-serratus_M_contig1335:38861..38883Fucus serratus maleUTRF-serratus_M_contig1335 38862..38883 +
1690962792.8877192-UTR-F-serratus_M_contig1335:38861..388831690962792.8877192-UTR-F-serratus_M_contig1335:38861..38883Fucus serratus maleUTRF-serratus_M_contig1335 38862..38883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1335.2491.1prot_F-serratus_M_contig1335.2491.1Fucus serratus malepolypeptideF-serratus_M_contig1335 38559..38861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1335.2491.1

>prot_F-serratus_M_contig1335.2491.1 ID=prot_F-serratus_M_contig1335.2491.1|Name=mRNA_F-serratus_M_contig1335.2491.1|organism=Fucus serratus male|type=polypeptide|length=101bp
IYRAICLPQCWDTVTRYHLKNRGVGKRTIRYRKLRYHIPYRLKNRGTPNL
TIFYHFLKALPCRTLIFLYHYYRFLFVWRVRRSFFLPDNVFPRCDHGLDF
*
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mRNA from alignment at F-serratus_M_contig1335:38559..38883+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1335.2491.1 ID=mRNA_F-serratus_M_contig1335.2491.1|Name=mRNA_F-serratus_M_contig1335.2491.1|organism=Fucus serratus male|type=mRNA|length=325bp|location=Sequence derived from alignment at F-serratus_M_contig1335:38559..38883+ (Fucus serratus male)
ATATACCGTGCCATTTGCTTACCGCAATGTTGGGATACCGTAACCAGATA
CCATTTGAAAAACCGTGGTGTGGGCAAACGTACTATCAGATACCGTAAAC
TCAGATACCATATACCGTACCGTTTGAAAAACCGTGGAACTCCAAACCTT
ACCATTTTCTACCATTTTTTAAAAGCGTTACCGTGTAGAACCCTGATATT
TTTGTACCATTATTACCGTTTCCTCTTTGTATGGAGAGTCCGTCGTAGTT
TTTTTCTTCCGGATAATGTTTTTCCACGTTGTGATCACGGGCTGGATTTT
TGACATCAGCTTATGTGAGAATTCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1335:38559..38883+

>mRNA_F-serratus_M_contig1335.2491.1 ID=mRNA_F-serratus_M_contig1335.2491.1|Name=mRNA_F-serratus_M_contig1335.2491.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig1335:38559..38883+ (Fucus serratus male)
ATATACCGTGCCATTTGCTTACCGCAATGTTGGGATACCGTAACCAGATA
CCATTTGAAAAACCGTGGTGTGGGCAAACGTACTATCAGATACCGTAAAC
TCAGATACCATATACCGTACCGTTTGAAAAACCGTGGAACTCCAAACCTT
ACCATTTTCTACCATTTTTTAAAAGCGTTACCGTGTAGAACCCTGATATT
TTTGTACCATTATTACCGTTTCCTCTTTGTATGGAGAGTCCGTCGTAGTT
TTTTTCTTCCGGATAATGTTTTTCCACGTTGTGATCACGGGCTGGATTTT
TGAATATACCGTGCCATTTGCTTACCGCAATGTTGGGATACCGTAACCAG
ATACCATTTGAAAAACCGTGGTGTGGGCAAACGTACTATCAGATACCGTA
AACTCAGATACCATATACCGTACCGTTTGAAAAACCGTGGAACTCCAAAC
CTTACCATTTTCTACCATTTTTTAAAAGCGTTACCGTGTAGAACCCTGAT
ATTTTTGTACCATTATTACCGTTTCCTCTTTGTATGGAGAGTCCGTCGTA
GTTTTTTTCTTCCGGATAATGTTTTTCCACGTTGTGATCACGGGCTGGAT
TTTTGA
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