mRNA_F-serratus_M_contig1333.2488.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1333.2488.1
Unique NamemRNA_F-serratus_M_contig1333.2488.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1333.2488.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 8.520e-27
Identity = 69/149 (46.31%), Postives = 87/149 (58.39%), Query Frame = 1
Query:   16 VPGLVEAGTRTTVSVKANAFDSRTSGGGCTPIG---CVEANTRD---SSLSSRWSCKRDLLDGE-TCEITFNFDEPQHIVRIDIAFYKGTERTRLLEIEVNGSRSSLIES-SGTTYGLEYFELDADEVETVTLKSLGLGGNEWISLAEV 438
            V G VE GT+T V V + A D R    GC  +G   C  ANTRD   S + SRWSC   L+D E  C+I F F EPQ IV I +AF+KG ERTR LE+ +NG  +   ES +  T+      + A +V TV L+S+ L  +EWISL EV
Sbjct:   85 VDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADATFNT--LGVTATDVSTVMLESVALLSDEWISLIEV 231          
BLAST of mRNA_F-serratus_M_contig1333.2488.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 3.230e-25
Identity = 69/149 (46.31%), Postives = 87/149 (58.39%), Query Frame = 1
Query:   16 VPGLVEAGTRTTVSVKANAFDSRTSGGGCTPIG---CVEANTRD---SSLSSRWSCKRDLLDGE-TCEITFNFDEPQHIVRIDIAFYKGTERTRLLEIEVNGSRSSLIES-SGTTYGLEYFELDADEVETVTLKSLGLGGNEWISLAEV 438
            V G VE GT+T V V + A D R    GC  +G   C  ANTRD   S + SRWSC   L+D E  C+I F F EPQ IV I +AF+KG ERTR LE+ +NG  +   ES +  T+      + A +V TV L+S+ L  +EWISL EV
Sbjct:  336 VDGAVEVGTKTEVGVSSTAHDVRPGDDGCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADATFNT--LGVTATDVSTVMLESVALLSDEWISLIEV 482          
BLAST of mRNA_F-serratus_M_contig1333.2488.1 vs. uniprot
Match: A0A6H5J8U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8U9_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 7.670e-25
Identity = 64/149 (42.95%), Postives = 91/149 (61.07%), Query Frame = 1
Query:   25 LVEAGTRTTVSVKANAFDSRT--SGG--GCTPIGCVEANTRDS----SLSSRWSCKRDLL-DGETCEITFNFDEPQHIVRIDIAFYKGTERTRLLEIEVNGSRSSLIES-SGTTYGLEYFELDADEVETVTLKSLGLGGNEWISLAEVR 441
             VEAG++TTV V A A+D R   S G  GC  +GC+     D        SRWSC  +++ DG  CEI+F FD PQ I  + +AF+KG ERTR L++++NG +    ES  G+T+    F +  + V TVT++S+G+  ++WISL EVR
Sbjct:  251 FVEAGSKTTVGVTATAYDDRPGESAGDVGCGEMGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEISFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGSTFNS--FGIQENGVHTVTMESVGIDRDDWISLLEVR 397          
BLAST of mRNA_F-serratus_M_contig1333.2488.1 vs. uniprot
Match: D7FI77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI77_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 1.240e-24
Identity = 72/161 (44.72%), Postives = 92/161 (57.14%), Query Frame = 1
Query:    1 SIPSPVPGLVEAGTRTTVSVKANAFDSR---TSGG-GCTPIG---CVEANTRD---SSLSSRWSCKRDLLDGE-TCEITFNFDEPQHIVRIDIAFYKGTERTRLLEIEVNG----SRSSLIESSGTTYGLEYFELDADEVETVTLKSLGLGGNEWISLAEV 438
            S+P+ V G VE GT+  V V A A D+R   +SG  GC  +G   C   NTRD   S + SRWSC   L+  E  C+I F F EPQHIV I +AF+KG +RTR L + VNG    +  S  +S+  T G+      A+E  TV L+S  L  +EWISL EV
Sbjct:   13 SLPT-VDGAVEVGTKIEVGVSATAHDTRPGNSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVPDEGPCQIEFTFAEPQHIVDIQVAFWKGNDRTRTLGVHVNGELTHTHESYTDSTFNTLGVT-----ANEASTVMLESTALLSDEWISLIEV 167          
BLAST of mRNA_F-serratus_M_contig1333.2488.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 1.520e-23
Identity = 71/157 (45.22%), Postives = 89/157 (56.69%), Query Frame = 1
Query:   16 VPGLVEAGTRTTVSVKANAFDSRTSGGGCTPIGCVEA--------NTRD---SSLSSRWSCKRDLLDGE-TCEITFNFDEPQHIVRIDIAFYKGTERTRLLEIEVNG----SRSSLIESSGTTYGLEYFELDADEVETVTLKSLGLGGNEWISLAEV 438
            V   VE GT+T VSV A A D R +G     +GC EA        N RD   + + SRWSC   LLD E  C+I F+F EPQ+IV I +AF+KG ER R LE+ VNG    +  S  +S+  T G+      A+E  TV L+S+ L  NEWISL EV
Sbjct:  150 VDDAVEVGTKTEVSVSATAHDVR-AGRSSGEVGCGEAGGNGCAANNARDGISTEIESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTLEVYVNGELTHTHESYADSTFNTLGVT-----ANEANTVMLESVSLLSNEWISLIEV 300          
BLAST of mRNA_F-serratus_M_contig1333.2488.1 vs. uniprot
Match: A0A6H5JFX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX1_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 5.090e-23
Identity = 61/146 (41.78%), Postives = 85/146 (58.22%), Query Frame = 1
Query:   25 LVEAGTRTTVSVKANAFDSR---TSGG-GCTPIGCVEANTRDS---SLSSRWSCKRDLL-DGETCEITFNFDEPQHIVRIDIAFYKGTERTRLLEIEVNGSRSSLIESSGTTYGLEYFELDADEVETVTLKSLGLGGNEWISLAEV 438
            LV A T T ++  A  FD R    SG  GC   GC+     D     + SRWSC  D++ DG  CEI F F  PQ++ ++ + F+KG ERTR L++++NG +    +S   +    YF++ A +V TVTL+SLGL  +EWISL EV
Sbjct:  191 LVNAATITAIAASATGFDERPGQASGDHGCGKYGCLPVLATDGITDDVESRWSCAEDIVPDGGQCEIEFTFSHPQNLKQLQVDFWKGEERTRTLKVKINGEKFGEFDSHPGSV-TSYFDVIAYDVHTVTLESLGLDTDEWISLLEV 335          
BLAST of mRNA_F-serratus_M_contig1333.2488.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 8.480e-23
Identity = 69/153 (45.10%), Postives = 89/153 (58.17%), Query Frame = 1
Query:   16 VPGLVEAGTRTTVSVKANAFDSR---TSG-GGCTPIG---CVEANTRD---SSLSSRWSCKRDLLDGE-TCEITFNFDEPQHIVRIDIAFYKGTERTRLLEIEVNGSRSSLIES-SGTTYGLEYFELDADEVETVTLKSLGLGGNEWISLAEV 438
            V G VE GT+T V V + A D R   +SG  GC  +G   C   NTRD   S + SRWSC   L+D E  C+I F F EPQ I+ I +AF+KG ERTR LE+ +NG  +   ES +  T+      + A +V TV L+S+ L  +EWISL EV
Sbjct:  359 VDGAVEVGTKTEVGVSSTAHDVRPGMSSGDAGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVHINGEMTHTHESYADATFNT--LGVTATDVSTVMLESVALLSDEWISLIEV 509          
BLAST of mRNA_F-serratus_M_contig1333.2488.1 vs. uniprot
Match: A0A6H5L4E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E8_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.960e-21
Identity = 61/143 (42.66%), Postives = 84/143 (58.74%), Query Frame = 1
Query:   25 LVEAGTRTTVSVKANAFDSRTSG-GGCTPIGCVEANTRDSSLS--SRWSCKRDLLDGETCEITFNFDEPQHIVRIDIAFYKGTERTRLLEIEVNGSRSSLIESSGTTYGLEYFELDADEVETVTLKSLGLGGNEWISLAEVRL 444
            LV+A  RT V   ANA+D RTS  GGC P GC  + TRD S    SRWSC   L D + C IT+NF+EPQ IVRI                ++NG    +I SSGT+   E ++++ DE + +++++L L  +EWIS+ EVR+
Sbjct:  608 LVDARKRTAVKKWANAYDDRTSEYGGCDPDGCKASFTRDRSWKDESRWSCSEKLEDAQ-CNITYNFEEPQDIVRI----------------KINGEFKKIITSSGTSSTYETWDINTDETKWLSMEALNLDDDEWISITEVRI 733          
BLAST of mRNA_F-serratus_M_contig1333.2488.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.130e-20
Identity = 66/152 (43.42%), Postives = 84/152 (55.26%), Query Frame = 1
Query:   28 VEAGTRTTVSVKANAFDSRTSGG----GCTPIG---CVEANTRD---SSLSSRWSCKRDLLDGE-TCEITFNFDEPQHIVRIDIAFYKGTERTRLLEIEVNG----SRSSLIESSGTTYGLEYFELDADEVETVTLKSLGLGGNEWISLAEV 438
            VE GT+T V V A A D R        GC  +G   C   NTRD   S + SRWSC   L+  E  C+I F+F EPQ++V I +AF+KG ERTR L + VNG    +  S  +S+  T G+      A E  TV L+S+ L  +EWISL EV
Sbjct:  459 VEVGTKTEVGVSATAHDVRPRSSSDDVGCGQVGGLGCTATNTRDGIVSDIESRWSCATILVPDEGACQIEFSFAEPQNVVDIQVAFWKGNERTRTLWVHVNGELTHTHESYADSTFNTLGVT-----ATEASTVMLESVALLSDEWISLLEV 605          
BLAST of mRNA_F-serratus_M_contig1333.2488.1 vs. uniprot
Match: D8LCQ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ5_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 2.760e-20
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  151 SRWSCKRDLL-DGETCEITFNFDEPQHIVRIDIAFYKGTERTRLLEIEVNGSRSSLIES-SGTTYGLEYFELDADEVETVTLKSLGLGGNEWISLAEVR 441
            SRWSC  +++ DG  CEITF FD PQ I  + +AF+KG ERTR L++++NG +    ES  G+T+    F +  + V TV ++S+G+  ++WISL EVR
Sbjct:   19 SRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGSTFNS--FGIQENGVHTVAMESVGIDADDWISLLEVR 115          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1333.2488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5F4_ECTSI8.520e-2746.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4F9_ECTSI3.230e-2546.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8U9_9PHAE7.670e-2542.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI77_ECTSI1.240e-2444.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S3_ECTSI1.520e-2345.22LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JFX1_9PHAE5.090e-2341.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G3F4_ECTSI8.480e-2345.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4E8_9PHAE1.960e-2142.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI87_ECTSI1.130e-2043.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCQ5_ECTSI2.760e-2045.45Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1333contigF-serratus_M_contig1333:60970..61428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue1.4e-14
Seed eggNOG ortholog2880.D7FL48
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size459
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929309.5722246-CDS-F-serratus_M_contig1333:60969..614281622929309.5722246-CDS-F-serratus_M_contig1333:60969..61428Fucus serratus maleCDSF-serratus_M_contig1333 60970..61428 +
1690962792.733488-CDS-F-serratus_M_contig1333:60969..614281690962792.733488-CDS-F-serratus_M_contig1333:60969..61428Fucus serratus maleCDSF-serratus_M_contig1333 60970..61428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1333.2488.1prot_F-serratus_M_contig1333.2488.1Fucus serratus malepolypeptideF-serratus_M_contig1333 60970..61428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1333.2488.1

>prot_F-serratus_M_contig1333.2488.1 ID=prot_F-serratus_M_contig1333.2488.1|Name=mRNA_F-serratus_M_contig1333.2488.1|organism=Fucus serratus male|type=polypeptide|length=153bp
SIPSPVPGLVEAGTRTTVSVKANAFDSRTSGGGCTPIGCVEANTRDSSLS
SRWSCKRDLLDGETCEITFNFDEPQHIVRIDIAFYKGTERTRLLEIEVNG
SRSSLIESSGTTYGLEYFELDADEVETVTLKSLGLGGNEWISLAEVRLKA
WR*
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mRNA from alignment at F-serratus_M_contig1333:60970..61428+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1333.2488.1 ID=mRNA_F-serratus_M_contig1333.2488.1|Name=mRNA_F-serratus_M_contig1333.2488.1|organism=Fucus serratus male|type=mRNA|length=459bp|location=Sequence derived from alignment at F-serratus_M_contig1333:60970..61428+ (Fucus serratus male)
TCGATACCTTCACCGGTACCTGGACTTGTTGAGGCCGGGACTAGGACCAC GGTTTCAGTCAAAGCGAATGCCTTCGACAGCAGGACGTCTGGTGGTGGTT GCACTCCAATCGGGTGCGTTGAGGCTAACACTCGCGACAGCAGTCTGTCC TCGCGATGGTCGTGTAAAAGAGACCTCCTTGATGGTGAAACTTGTGAGAT TACTTTCAACTTCGACGAGCCTCAGCATATCGTGCGTATCGATATAGCCT TCTACAAGGGCACTGAGAGAACGCGTCTGCTCGAGATCGAGGTGAATGGA TCTAGGAGTTCTTTGATCGAGTCCAGTGGCACCACATACGGTTTGGAATA TTTCGAGCTGGATGCAGATGAGGTGGAGACCGTCACACTCAAGAGTCTTG GTCTCGGCGGCAATGAGTGGATCAGCTTGGCGGAGGTACGTTTGAAGGCT TGGAGGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1333:60970..61428+

>mRNA_F-serratus_M_contig1333.2488.1 ID=mRNA_F-serratus_M_contig1333.2488.1|Name=mRNA_F-serratus_M_contig1333.2488.1|organism=Fucus serratus male|type=CDS|length=918bp|location=Sequence derived from alignment at F-serratus_M_contig1333:60970..61428+ (Fucus serratus male)
TCGATACCTTCACCGGTACCTGGACTTGTTGAGGCCGGGACTAGGACCAC
GGTTTCAGTCAAAGCGAATGCCTTCGACAGCAGGACGTCTGGTGGTGGTT
GCACTCCAATCGGGTGCGTTGAGGCTAACACTCGCGACAGCAGTCTGTCC
TCGCGATGGTCGTGTAAAAGAGACCTCCTTGATGGTGAAACTTGTGAGAT
TACTTTCAACTTCGACGAGCCTCAGCATATCGTGCGTATCGATATAGCCT
TCTACAAGGGCACTGAGAGAACGCGTCTGCTCGAGATCGAGGTGAATGGA
TCTAGGAGTTCTTTGATCGAGTCCAGTGGCACCACATACGGTTTGGAATA
TTTCGAGCTGGATGCAGATGAGGTGGAGACCGTCACACTCAAGAGTCTTG
GTCTCGGCGGCAATGAGTGGATCAGCTTGGCGGAGGTACGTTTGAAGGCT
TGGAGGTGATCGATACCTTCACCGGTACCTGGACTTGTTGAGGCCGGGAC
TAGGACCACGGTTTCAGTCAAAGCGAATGCCTTCGACAGCAGGACGTCTG
GTGGTGGTTGCACTCCAATCGGGTGCGTTGAGGCTAACACTCGCGACAGC
AGTCTGTCCTCGCGATGGTCGTGTAAAAGAGACCTCCTTGATGGTGAAAC
TTGTGAGATTACTTTCAACTTCGACGAGCCTCAGCATATCGTGCGTATCG
ATATAGCCTTCTACAAGGGCACTGAGAGAACGCGTCTGCTCGAGATCGAG
GTGAATGGATCTAGGAGTTCTTTGATCGAGTCCAGTGGCACCACATACGG
TTTGGAATATTTCGAGCTGGATGCAGATGAGGTGGAGACCGTCACACTCA
AGAGTCTTGGTCTCGGCGGCAATGAGTGGATCAGCTTGGCGGAGGTACGT
TTGAAGGCTTGGAGGTGA
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