mRNA_F-serratus_M_contig1331.2479.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig1331.2479.1
Unique Name	mRNA_F-serratus_M_contig1331.2479.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig1331.2479.1 vs. uniprot
Match: A0A6H5LBB4_9PHAE (TsaA-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LBB4_9PHAE)

HSP 1 Score: 587 bits (1514), Expect = 5.090e-202
Identity = 331/578 (57.27%), Postives = 412/578 (71.28%), Query Frame = 1

Query:    4 NLIVLSLALACGFVAGHLSARRYKQHQPQENCWPHSRGRKKRRARIRKSAEKSAKGASG-PEKSFPTSVEGSSGKLTRQTRKRNKKLAPKDLALDVFVKVASSQAESIGAGNYGSLLLLPRATFIAAGRFLAYSDCQEHLVSLGQARAAMTRVDELRILYVSCSWSNYVRGEKC-WDTTDFETTRAFLQSNPTVVFVYVGRSCMVGDPDNP--LKTSQLRHVPCVLMRADFMLILPPQLAMVG--DSSASRWHQHSDFSLHARGAWARMELALAAVGQAKVYVAFRAGPYPDCVCELEPGKSDVRDMVKKASDALKNAASSLKNDMQRSSEALASVVRSACDNWLDSDLNPLKALEEARAVVTAAEKNGNVRVLESIRSMHPISPSDESISGVRAALGEDHIEGAGETALCLLLFSVFCSRPKGRGTYTDAFVDAAAEMEITYRPIALVRSPYRERFGTPRQPQVTASVLNGGAQQGQIVFLKEHGYEEALQDLEGFDMIWVLSHMHLNRGWSRKVRPPRLPEERKGLFSTRSPHRPNPVALSSLRVDRVDASGGVIYVHGLDLLDGTPVLDIKPYIG 1719
            N++ LS AL  G+  G       K+   Q  C    RG  KRRARI+KS + S   A+G                    TR R KKLAP+ LALD + +VA S  +SIG G+Y SLLLLPR  FI AGRF+ Y++C++ LVSLGQARAA   V++LR+LYVSCSW++   GE   W   DFETTRA+LQ NP + FVYVGRSC+VG   +   ++++QLRHV   L+R+D +L+LP      G  + S S   +++DF   ARG+ +RM LA+AAVGQAKV+VAFRAG YP+ V ELE GKS+VR   K+A DAL+ AA+      +R  ++ A+VV  AC+NWL +DLNPL ALE+ARAVV  A+++ +   LE+I+SM P +PS    +  RAALG++ I    E AL +LLF+V CS+ K R TYT+ FV+   +MEI+Y P+A+VRSPYRERFGTPRQPQVTASVL+GGAQ+GQIVFL+  GYEEALQDL GFDMIWVL+HMHLN+GW+ KVRPPRLPEERKGLFSTRSPHRPN +ALSSLRV RVDA+ GVIYVHGLDLLDGTPVLDIKPYIG
Sbjct:   11 NILALSSALVVGYAVGRFEGGGGKKETQQHPC--SVRG-AKRRARIKKSEDNSRARAAGLASXXXXXXXXXXXXXXXXXTRSRKKKLAPRCLALDAWTRVARSYIKSIGEGDYESLLLLPRECFIVAGRFVPYAECRDQLVSLGQARAATAGVEQLRVLYVSCSWASAGGGEGTGWAVQDFETTRAYLQRNPDLSFVYVGRSCVVGSSSSTGHVRSTQLRHVAPALLRSDAVLVLPRLAKSPGGEEGSGSTGTRYTDFECSARGSRSRMVLAIAAVGQAKVFVAFRAGSYPESVVELELGKSNVRATAKQAVDALRAAAA------KRPQKSTAAVVEEACENWLGADLNPLSALEQARAVVEEAQRSDDGEALENIQSMRP-APS--FAANARAALGDEFIGEERELALSMLLFAVLCSQRKERATYTENFVEDVGKMEISYCPVAVVRSPYRERFGTPRQPQVTASVLHGGAQEGQIVFLRGRGYEEALQDLSGFDMIWVLTHMHLNKGWNPKVRPPRLPEERKGLFSTRSPHRPNAIALSSLRVGRVDAANGVIYVHGLDLLDGTPVLDIKPYIG 576

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BLAST of mRNA_F-serratus_M_contig1331.2479.1 vs. uniprot
Match: A0A835YNQ9_9STRA (TsaA-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNQ9_9STRA)

HSP 1 Score: 182 bits (463), Expect = 3.730e-51
Identity = 83/132 (62.88%), Postives = 106/132 (80.30%), Query Frame = 1

Query: 1321 IALVRSPYRERFGTPRQPQVTASVLNGGAQQGQIVFLKEHGYEEALQDLEGFDMIWVLSHMHLNRGWSRKVRPPRLPEERKGLFSTRSPHRPNPVALSSLRVDRVDASGGVIYVHGLDLLDGTPVLDIKPYI 1716
            I +VRSPY+ERFGTPRQ  VTA VL G AQ GQ+VF +   +E AL+DL+GFD +WV+S+MHLN+GW+ KV+PPR P  ++GLFSTRSPHRPN +ALS++++  VD  G  + V GLDLLDGTP+LDIKPY+
Sbjct:    6 IGVVRSPYKERFGTPRQANVTAGVLEGKAQHGQLVFSRGRNFEVALEDLDGFDYVWVISYMHLNQGWNPKVKPPRGPRVKRGLFSTRSPHRPNSIALSAVKIVSVDPKGLTVTVEGLDLLDGTPILDIKPYV 137

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BLAST of mRNA_F-serratus_M_contig1331.2479.1 vs. uniprot
Match: A0A7S3XP01_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XP01_HETAK)

HSP 1 Score: 176 bits (447), Expect = 8.050e-48
Identity = 85/151 (56.29%), Postives = 110/151 (72.85%), Query Frame = 1

Query: 1267 YTDAFVDAAAEMEITYRPIALVRSPYRERFGTPRQPQVTASVLNGGAQQGQIVFLKEHGYEEALQDLEGFDMIWVLSHMHLNRGWSRKVRPPRLPEERK-GLFSTRSPHRPNPVALSSLRVDRVDASGGVIYVHGLDLLDGTPVLDIKPYI 1716
            YT+ F    +   ++   IA+VRSPY+ERFGTPRQP VT   L G AQ G+IVF K   +E ALQDLEGF+  W++++ HLN+GW+ KV+PPR   + K GLF+TRSPHRPNP+ LS+ ++  VD   GV+ V GLDLLDGTPVLD+KPY+
Sbjct:   60 YTEQFTTPES---VSMETIAVVRSPYKERFGTPRQPVVTKGTLGGSAQIGEIVFKKNRNFEIALQDLEGFEYCWLITYFHLNKGWNPKVKPPRGKHDAKLGLFATRSPHRPNPIGLSACKIHSVDHRQGVVRVAGLDLLDGTPVLDLKPYV 207

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BLAST of mRNA_F-serratus_M_contig1331.2479.1 vs. uniprot
Match: R1DL83_EMIHU (TsaA-like domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DL83_EMIHU)

HSP 1 Score: 173 bits (438), Expect = 6.190e-46
Identity = 86/151 (56.95%), Postives = 106/151 (70.20%), Query Frame = 1

Query: 1267 YTDAFVDAAAEMEITYRPIALVRSPYRERFGTPRQPQVTASVLNGGAQQGQIVFLKEHGYEEALQDLEGFDMIWVLSHMHLNRGWSRKVRPPRLPEERK-GLFSTRSPHRPNPVALSSLRVDRVDASGGVIYVHGLDLLDGTPVLDIKPYI 1716
            YTDAF D AA   +T  PI ++RSPY+ERFGTPRQP VT  V  GGAQ+G I    + G +  L+ L GFD  W ++ MHLN GW   VRPPR P   K G+F+TR+PHRPNP+ALS+L+V  VD +   + V GLDLLDGTPVLD+KPY+
Sbjct:   32 YTDAFADHAAA-PVTLTPIGVIRSPYKERFGTPRQPTVTTQVSGGGAQRGCIELRPDAGLDHTLRGLAGFDYCWAITLMHLNAGWKPLVRPPRGPRRAKQGVFATRAPHRPNPIALSALKVVEVDEAALRVTVEGLDLLDGTPVLDLKPYV 181

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BLAST of mRNA_F-serratus_M_contig1331.2479.1 vs. uniprot
Match: A0A6N6JQK0_9BACT (tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO n=3 Tax=Bacteria TaxID=2 RepID=A0A6N6JQK0_9BACT)

HSP 1 Score: 166 bits (420), Expect = 8.130e-45
Identity = 81/145 (55.86%), Postives = 108/145 (74.48%), Query Frame = 1

Query: 1288 AAAEMEITYRPIAL--VRSPYRERFGTPRQPQVTASVLNGGAQQGQIVFLKEHGYEEALQDLEGFDMIWVLSHMHLNRGWSRKVRPPRLPEERKGLFSTRSPHRPNPVALSSLRVDRVDASGGVIYVHGLDLLDGTPVLDIKPYI 1716
            A  +   T+  +A+  VRSPY+ERFGTPRQP VTA  L   A   +I  L    +E+ALQDLEGF+ IWVL+ +HLN GW+ +V PPR P+ ++GLF+TR+PHRPNP+ LS+LR+ RV+  G V++V G+DLLDGTPVLD+KPY+
Sbjct:   12 AGQKAPATFTCVAIGHVRSPYKERFGTPRQPVVTAQTLEDRALDARIELLPAMNFEQALQDLEGFEYIWVLAWLHLNSGWNPQVMPPRGPKVKRGLFATRAPHRPNPIGLSALRLIRVE--GRVLHVRGIDLLDGTPVLDVKPYV 154

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BLAST of mRNA_F-serratus_M_contig1331.2479.1 vs. uniprot
Match: A0A7S1WEL1_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WEL1_ALECA)

HSP 1 Score: 166 bits (421), Expect = 1.800e-44
Identity = 80/152 (52.63%), Postives = 109/152 (71.71%), Query Frame = 1

Query: 1267 YTDAFVDAAAEMEITYRPIALVRSPYRERFGTPRQPQVTASVLNGGAQQGQIVFLK--EHGYEEALQDLEGFDMIWVLSHMHLNRGWSRKVRPPRLPEERKGLFSTRSPHRPNPVALSSLRVDRVDASGGVIYVHGLDLLDGTPVLDIKPYI 1716
            +TDAF      +++T R I +VRSPY+ERFG PRQP ++  VL G AQ+G I FL   +     AL+DLEGF+ IW++ ++HLN GWS +V PPR   +++GLF+TRSPHRPN ++LS+ ++  VDA    + V GLDLLDGTPVLD+KPY+
Sbjct:   31 HTDAF---PTPLQVTLRTIGVVRSPYKERFGCPRQPPISKGVLGGSAQEGTIQFLDNPDGDIALALKDLEGFERIWIVGYLHLNEGWSPRVTPPRGARQKRGLFATRSPHRPNHISLSACQLLSVDAKAKTLTVRGLDLLDGTPVLDVKPYV 179

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BLAST of mRNA_F-serratus_M_contig1331.2479.1 vs. uniprot
Match: A0A0G4F040_VITBC (TsaA-like domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F040_VITBC)

HSP 1 Score: 167 bits (424), Expect = 2.680e-44
Identity = 84/150 (56.00%), Postives = 107/150 (71.33%), Query Frame = 1

Query: 1273 DAFVDAAAEMEITYRPIALVRSPYRERFGTPRQPQVTASVLNGGAQQGQIVFLKEHGYEEALQDLEGFDMIWVLSHMHLNRGWSRKVR--PPRLPEERKGLFSTRSPHRPNPVALSSLRVDRVDASGGVIYVHGLDLLDGTPVLDIKPYI 1716
            DA V  A EM     PI +VRSPY+ERFGTPRQP VT   L G  Q   +  L+ HGYE  L+D+EGF+ +W++++MHLN+GW  KVR  P +LP  R GLF+TR+PHRPN +ALS++ V  VD   G +++ GLDLLDGTPVLDIKPY+
Sbjct:   80 DADVPEAIEMH----PIGVVRSPYKERFGTPRQPVVTEGTLGGVKQNATVQLLRGHGYEACLEDVEGFERVWLITYMHLNQGWRSKVRVYPRKLPR-RLGLFATRAPHRPNQLALSAVEVVGVDVDAGQLHILGLDLLDGTPVLDIKPYV 224

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BLAST of mRNA_F-serratus_M_contig1331.2479.1 vs. uniprot
Match: A0A7V8E2B3_9BACT (TsaA-like domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V8E2B3_9BACT)

HSP 1 Score: 163 bits (413), Expect = 8.280e-44
Identity = 80/132 (60.61%), Postives = 100/132 (75.76%), Query Frame = 1

Query: 1321 IALVRSPYRERFGTPRQPQVTASVLNGGAQQGQIVFLKEHGYEEALQDLEGFDMIWVLSHMHLNRGWSRKVRPPRLPEERKGLFSTRSPHRPNPVALSSLRVDRVDASGGVIYVHGLDLLDGTPVLDIKPYI 1716
            I  VRSPY+ERFGTPRQP VT   L   A +  I  L    +E+AL+DLEGFD IWVL+ +HLN GWS +V PPR PE ++GLF+TR+PHRPNP++LS+LR+  ++  G V+ V G+DLLDGTPVLDIKPYI
Sbjct:   25 IGHVRSPYKERFGTPRQPPVTEQTLEDRALEASIELLPGRNFEQALKDLEGFDYIWVLAWLHLNEGWSPQVIPPRGPEVKRGLFATRAPHRPNPISLSALRLLGIE--GRVLKVRGIDLLDGTPVLDIKPYI 154

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BLAST of mRNA_F-serratus_M_contig1331.2479.1 vs. uniprot
Match: A0A7S2IIV7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IIV7_9EUKA)

HSP 1 Score: 164 bits (416), Expect = 1.510e-43
Identity = 77/150 (51.33%), Postives = 108/150 (72.00%), Query Frame = 1

Query: 1267 YTDAFVDAAAEMEITYRPIALVRSPYRERFGTPRQPQVTASVLNGGAQQGQIVFLKEHGYEEALQDLEGFDMIWVLSHMHLNRGWSRKVRPPRLPEERKGLFSTRSPHRPNPVALSSLRVDRVDASGGVIYVHGLDLLDGTPVLDIKPYI 1716
            YT+AF ++A  +++   PI  V SPY+ERFGTPRQP V+A    G    G +V   +    +AL DLEGF  +W++S++HLNRGW  +V+PPR P++R+GLF+TR+PHRPN + +S++ +  VD  GG ++V GLDLLD TPVLD+KPYI
Sbjct:   66 YTEAFRESA-HLDVNLSPIGFVESPYKERFGTPRQPVVSALTAGGAMLDGCVVLRPD--LADALVDLEGFSHMWIVSYLHLNRGWKLRVKPPRGPKQRRGLFATRAPHRPNQLGMSAVEITAVDHIGGRVHVRGLDLLDHTPVLDLKPYI 212

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BLAST of mRNA_F-serratus_M_contig1331.2479.1 vs. uniprot
Match: A0A812QIS2_9DINO (TrmO protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812QIS2_9DINO)

HSP 1 Score: 162 bits (409), Expect = 5.060e-42
Identity = 81/155 (52.26%), Postives = 107/155 (69.03%), Query Frame = 1

Query: 1267 YTDAFVDAAAEMEITYRPIALVRSPYRERFGTPRQPQVTASVLNGGAQQGQIVFLK-----EHGYEEALQDLEGFDMIWVLSHMHLNRGWSRKVRPPRLPEERKGLFSTRSPHRPNPVALSSLRVDRVDASGGVIYVHGLDLLDGTPVLDIKPYI 1716
            +TDAF      ME++ + +A+VRSPY+ERFG PRQP VT  VL G A  G +  +      E     AL++L GF+ IWV+S++H+N GWS  V PPR P  ++GLF+TR+PHRPN + LS+ R+  VDA+   + VHGLDLLDGTPVLDIKPY+
Sbjct:   74 HTDAF---PTPMEVSMQTLAVVRSPYKERFGCPRQPTVTEGVLGGEAGAGFLELVPSDQNPEEKLRMALRELSGFEFIWVISYLHMNEGWSASVTPPRGPRRKRGLFATRAPHRPNHIGLSACRLLGVDAAKLQVSVHGLDLLDGTPVLDIKPYV 225

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1331.2479.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1331.2479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5LBB4_9PHAE	5.090e-202	57.27	TsaA-like domain-containing protein n=2 Tax=Ectoca...	[more]
A0A835YNQ9_9STRA	3.730e-51	62.88	TsaA-like domain-containing protein n=1 Tax=Tribon...	[more]
A0A7S3XP01_HETAK	8.050e-48	56.29	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
R1DL83_EMIHU	6.190e-46	56.95	TsaA-like domain-containing protein n=1 Tax=Emilia...	[more]
A0A6N6JQK0_9BACT	8.130e-45	55.86	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyl...	[more]
A0A7S1WEL1_ALECA	1.800e-44	52.63	Hypothetical protein n=1 Tax=Alexandrium catenella...	[more]
A0A0G4F040_VITBC	2.680e-44	56.00	TsaA-like domain-containing protein n=2 Tax=Vitrel...	[more]
A0A7V8E2B3_9BACT	8.280e-44	60.61	TsaA-like domain-containing protein n=1 Tax=Planct...	[more]
A0A7S2IIV7_9EUKA	1.510e-43	51.33	Hypothetical protein (Fragment) n=1 Tax=Haptolina ...	[more]
A0A812QIS2_9DINO	5.060e-42	52.26	TrmO protein n=1 Tax=Symbiodinium sp. CCMP2456 Tax...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1331	contig	F-serratus_M_contig1331:164972..167378 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	597.8
Seed ortholog evalue	5.3e-168
Seed eggNOG ortholog	2880.D7FI01
Hectar predicted targeting category	signal peptide
EggNOG free text desc.	tRNA (adenine-N6-)-methyltransferase activity
EggNOG OGs	COG1720@1,KOG2942@2759
Ec32 ortholog description	TsaA-like domain
Ec32 ortholog	Ec-12_006540.1
COG Functional cat.	V
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Exons	4
Model size	1722
Cds size	1722
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1331.2479.1	prot_F-serratus_M_contig1331.2479.1	Fucus serratus male	polypeptide	F-serratus_M_contig1331 164972..167378 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929308.2229338-CDS-F-serratus_M_contig1331:164971..165009	1622929308.2229338-CDS-F-serratus_M_contig1331:164971..165009	Fucus serratus male	CDS	F-serratus_M_contig1331 164972..165009 -
1690962792.012587-CDS-F-serratus_M_contig1331:164971..165009	1690962792.012587-CDS-F-serratus_M_contig1331:164971..165009	Fucus serratus male	CDS	F-serratus_M_contig1331 164972..165009 -
1622929308.234924-CDS-F-serratus_M_contig1331:165394..165631	1622929308.234924-CDS-F-serratus_M_contig1331:165394..165631	Fucus serratus male	CDS	F-serratus_M_contig1331 165395..165631 -
1690962792.0237255-CDS-F-serratus_M_contig1331:165394..165631	1690962792.0237255-CDS-F-serratus_M_contig1331:165394..165631	Fucus serratus male	CDS	F-serratus_M_contig1331 165395..165631 -
1622929308.2478297-CDS-F-serratus_M_contig1331:165856..166351	1622929308.2478297-CDS-F-serratus_M_contig1331:165856..166351	Fucus serratus male	CDS	F-serratus_M_contig1331 165857..166351 -
1690962792.0394945-CDS-F-serratus_M_contig1331:165856..166351	1690962792.0394945-CDS-F-serratus_M_contig1331:165856..166351	Fucus serratus male	CDS	F-serratus_M_contig1331 165857..166351 -
1622929308.2591593-CDS-F-serratus_M_contig1331:166426..167378	1622929308.2591593-CDS-F-serratus_M_contig1331:166426..167378	Fucus serratus male	CDS	F-serratus_M_contig1331 166427..167378 -
1690962792.0505543-CDS-F-serratus_M_contig1331:166426..167378	1690962792.0505543-CDS-F-serratus_M_contig1331:166426..167378	Fucus serratus male	CDS	F-serratus_M_contig1331 166427..167378 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig1331:164972..167378-
coding sequence from alignment at F-serratus_M_contig1331:164972..167378-

protein sequence of mRNA_F-serratus_M_contig1331.2479.1

>prot_F-serratus_M_contig1331.2479.1 ID=prot_F-serratus_M_contig1331.2479.1|Name=mRNA_F-serratus_M_contig1331.2479.1|organism=Fucus serratus male|type=polypeptide|length=574bp
TNLIVLSLALACGFVAGHLSARRYKQHQPQENCWPHSRGRKKRRARIRKS
AEKSAKGASGPEKSFPTSVEGSSGKLTRQTRKRNKKLAPKDLALDVFVKV
ASSQAESIGAGNYGSLLLLPRATFIAAGRFLAYSDCQEHLVSLGQARAAM
TRVDELRILYVSCSWSNYVRGEKCWDTTDFETTRAFLQSNPTVVFVYVGR
SCMVGDPDNPLKTSQLRHVPCVLMRADFMLILPPQLAMVGDSSASRWHQH
SDFSLHARGAWARMELALAAVGQAKVYVAFRAGPYPDCVCELEPGKSDVR
DMVKKASDALKNAASSLKNDMQRSSEALASVVRSACDNWLDSDLNPLKAL
EEARAVVTAAEKNGNVRVLESIRSMHPISPSDESISGVRAALGEDHIEGA
GETALCLLLFSVFCSRPKGRGTYTDAFVDAAAEMEITYRPIALVRSPYRE
RFGTPRQPQVTASVLNGGAQQGQIVFLKEHGYEEALQDLEGFDMIWVLSH
MHLNRGWSRKVRPPRLPEERKGLFSTRSPHRPNPVALSSLRVDRVDASGG
VIYVHGLDLLDGTPVLDIKPYIG*

mRNA from alignment at F-serratus_M_contig1331:164972..167378-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig1331.2479.1 ID=mRNA_F-serratus_M_contig1331.2479.1|Name=mRNA_F-serratus_M_contig1331.2479.1|organism=Fucus serratus male|type=mRNA|length=2407bp|location=Sequence derived from alignment at F-serratus_M_contig1331:164972..167378- (Fucus serratus male)
ACCAATTTGATAGTGTTGTCCTTGGCTTTGGCCTGTGGATTCGTGGCCGG
TCACCTCTCCGCCCGTCGATACAAGCAGCACCAACCACAGGAGAATTGCT
GGCCACACAGCCGAGGGCGAAAGAAGCGCAGAGCGCGGATTCGCAAGAGC
GCAGAGAAAAGCGCGAAGGGAGCGTCTGGACCTGAGAAATCATTCCCGAC
GTCCGTCGAAGGCAGTTCGGGTAAGCTTACTCGACAAACGCGTAAGCGCA
ACAAGAAGCTGGCGCCTAAAGATCTAGCTCTCGATGTTTTCGTAAAAGTT
GCAAGCTCTCAAGCTGAGTCTATCGGCGCCGGTAACTATGGATCTCTCCT
GCTCCTACCTAGAGCAACCTTCATCGCCGCCGGACGCTTCTTGGCCTACT
CGGACTGCCAGGAGCATCTGGTTTCCCTTGGACAAGCACGTGCGGCGATG
ACCAGGGTTGATGAACTGCGCATACTCTACGTGAGCTGCTCCTGGTCAAA
CTATGTTCGTGGGGAGAAATGCTGGGATACGACGGACTTCGAAACCACCC
GTGCTTTTCTCCAGAGCAATCCTACCGTGGTGTTCGTTTACGTGGGCCGG
TCGTGCATGGTGGGCGACCCCGACAACCCTTTGAAGACCTCGCAACTTCG
GCACGTTCCGTGTGTGCTCATGCGAGCTGACTTCATGTTGATCCTCCCAC
CCCAACTAGCAATGGTAGGAGACTCGTCCGCGAGCAGATGGCATCAGCAC
AGCGATTTCAGCCTGCACGCTCGAGGAGCTTGGGCACGAATGGAATTGGC
GCTGGCTGCTGTTGGTCAGGCGAAAGTCTACGTTGCATTTCGTGCAGGAC
CATATCCCGACTGTGTGTGCGAGCTAGAGCCAGGAAAGAGCGATGTACGG
GACATGGTTAAGAAGGCTTCGGACGCTCTGAAGAACGCCGCATCATCACT
GAGTACTGGCGAGGCCAATGCTGGGACAGGCGACGTCTCCTTCGGTATCG
ATGCTTCGACGAAGGTGGGAACGCAAGAAAATGATATGCAGAGGAGTTCG
GAGGCGTTGGCGTCGGTGGTGAGGTCTGCCTGCGACAATTGGCTGGATTC
AGACCTAAACCCGCTCAAAGCGCTAGAAGAAGCGCGGGCGGTTGTGACGG
CGGCCGAAAAAAACGGCAACGTCAGGGTGCTAGAGAGCATCCGAAGCATG
CATCCAATATCACCCTCGGATGAGTCGATCTCGGGCGTGCGGGCTGCGTT
GGGGGAAGATCATATCGAGGGAGCCGGAGAAACAGCCTTGTGTTTGCTCT
TGTTCTCCGTGTTTTGCTCCCGACCGAAGGGTCGAGGAACGTACACTGAC
GCCTTCGTTGACGCCGCCGCTGAAATGGAGATAACATATCGCCCCATTGC
GTTGGTTAGAAGCCCGTATCGAGAGCGTTTCGGGACTCCGCGGCAGCCGC
AGGTGACCGCTTCGGTTCTGAACGGTGGAGCTCAACAGGGGCAGATTGTT
TTCCTCAAGGAGCACGGCTATGGTAAGTGCGCGTGCCGAATCAGAACGCG
TCTTTATCGCCGTTCTCGTCCAAGGACAGTTGTCGACCCAATATTTCCGC
ATGTTATTATCGACGAGAGAACGCTAGCGCTGGCGCTACAGTATCGTCTA
TACATGATCGTCTACATATACAGTCTAGTATTTCCCATTATGCCAAAAGA
GCACATTCTCCCACTGTTCGTTGTACTTGTTTCCCCCTTCGCCCCAGAGG
AAGCATTGCAAGACCTGGAGGGGTTTGACATGATATGGGTATTATCTCAC
ATGCACCTCAACAGGGGCTGGAGCCGCAAGGTTCGACCGCCGCGACTGCC
CGAGGAACGCAAGGGGCTTTTCTCCACCCGGAGCCCACATCGACCAAACC
CCGTAGCGCTTTCATCTCTCCGGGTAGACAGGGTTGACGCCTCAGGGGGC
GTGATCTACGTGCACGGTCTCGACCTGCTTGATGGTGAGCCACGAATCAC
ACGAGCGTGTATTCGATACACATACTGGTATTATTATTGATGATTCCGAA
GCCGAAAAAAGTTTTTGATAATGTAACAGAGTAACAATCAAGTGCAGCAC
CGTGTTACTCACTCGTACACTGTAGACACCATAGACTGGAGGTGTTTTTG
GACATAACGAACGTTGTGCAACTGTACTATAATAAATACTGTACCTCAGG
ATTCACGCAACAACATGAAGTGTCTCAGCAGGCTTTCCTCGTTTGCTTCT
TGAGAATGCCTGCAGAACTAAATGGTGTGCCAGACTATTGTCAGTAGTTT
GCGATCTGATGCCCCTCTACGGCACTCGTCGGAAACAAACTCCGCGACGG
TCTCCGCGGGGATCGACAGGCACGCCCGTGCTGGACATCAAACCGTACAT
CGGGTGA

Coding sequence (CDS) from alignment at F-serratus_M_contig1331:164972..167378-

>mRNA_F-serratus_M_contig1331.2479.1 ID=mRNA_F-serratus_M_contig1331.2479.1|Name=mRNA_F-serratus_M_contig1331.2479.1|organism=Fucus serratus male|type=CDS|length=3444bp|location=Sequence derived from alignment at F-serratus_M_contig1331:164972..167378- (Fucus serratus male)
ACCAATTTGATAGTGTTGTCCTTGGCTTTGGCCTGTGGATTCGTGGCCGG
TCACCTCTCCGCCCGTCGATACAAGCAGCACCAACCACAGGAGAATTGCT
GGCCACACAGCCGAGGGCGAAAGAAGCGCAGAGCGCGGATTCGCAAGAGC
GCAGAGAAAAGCGCGAAGGGAGCGTCTGGACCTGAGAAATCATTCCCGAC
GTCCGTCGAAGGCAGTTCGGGTAAGCTTACTCGACAAACGCGTAAGCGCA
ACAAGAAGCTGGCGCCTAAAGATCTAGCTCTCGATGTTTTCGTAAAAGTT
GCAAGCTCTCAAGCTGAGTCTATCGGCGCCGGTAACTATGGATCTCTCCT
GCTCCTACCTAGAGCAACCTTCATCGCCGCCGGACGCTTCTTGGCCTACT
CGGACTGCCAGGAGCATCTGGTTTCCCTTGGACAAGCACGTGCGGCGATG
ACCAGGGTTGATGAACTGCGCATACTCTACGTGAGCTGCTCCTGGTCAAA
CTATGTTCGTGGGGAGAAATGCTGGGATACGACGGACTTCGAAACCACCC
GTGCTTTTCTCCAGAGCAATCCTACCGTGGTGTTCGTTTACGTGGGCCGG
TCGTGCATGGTGGGCGACCCCGACAACCCTTTGAAGACCTCGCAACTTCG
GCACGTTCCGTGTGTGCTCATGCGAGCTGACTTCATGTTGATCCTCCCAC
CCCAACTAGCAATGGTAGGAGACTCGTCCGCGAGCAGATGGCATCAGCAC
AGCGATTTCAGCCTGCACGCTCGAGGAGCTTGGGCACGAATGGAATTGGC
GCTGGCTGCTGTTGGTCAGGCGAAAGTCTACGTTGCATTTCGTGCAGGAC
CATATCCCGACTGTGTGTGCGAGCTAGAGCCAGGAAAGAGCGATGTACGG
GACATGGTTAAGAAGGCTTCGGACGCTCTGAAGAACGCCGCATCATCACT
GAACCAATTTGATAGTGTTGTCCTTGGCTTTGGCCTGTGGATTCGTGGCC
GGTCACCTCTCCGCCCGTCGATACAAGCAGCACCAACCACAGGAGAATTG
CTGGCCACACAGCCGAGGGCGAAAGAAGCGCAGAGCGCGGATTCGCAAGA
GCGCAGAGAAAAGCGCGAAGGGAGCGTCTGGACCTGAGAAATCATTCCCG
ACGTCCGTCGAAGGCAGTTCGGGTAAGCTTACTCGACAAACGCGTAAGCG
CAACAAGAAGCTGGCGCCTAAAGATCTAGCTCTCGATGTTTTCGTAAAAG
TTGCAAGCTCTCAAGCTGAGTCTATCGGCGCCGGTAACTATGGATCTCTC
CTGCTCCTACCTAGAGCAACCTTCATCGCCGCCGGACGCTTCTTGGCCTA
CTCGGACTGCCAGGAGCATCTGGTTTCCCTTGGACAAGCACGTGCGGCGA
TGACCAGGGTTGATGAACTGCGCATACTCTACGTGAGCTGCTCCTGGTCA
AACTATGTTCGTGGGGAGAAATGCTGGGATACGACGGACTTCGAAACCAC
CCGTGCTTTTCTCCAGAGCAATCCTACCGTGGTGTTCGTTTACGTGGGCC
GGTCGTGCATGGTGGGCGACCCCGACAACCCTTTGAAGACCTCGCAACTT
CGGCACGTTCCGTGTGTGCTCATGCGAGCTGACTTCATGTTGATCCTCCC
ACCCCAACTAGCAATGGTAGGAGACTCGTCCGCGAGCAGATGGCATCAGC
ACAGCGATTTCAGCCTGCACGCTCGAGGAGCTTGGGCACGAATGGAATTG
GCGCTGGCTGCTGTTGGTCAGGCGAAAGTCTACGTTGCATTTCGTGCAGG
ACCATATCCCGACTGTGTGTGCGAGCTAGAGCCAGGAAAGAGCGATGTAC
GGGACATGGTTAAGAAGGCTTCGGACGCTCTGAAGAACGCCGCATCATCA
CTGAAAAATGATATGCAGAGGAGTTCGGAGGCGTTGGCGTCGGTGGTGAG
GTCTGCCTGCGACAATTGGCTGGATTCAGACCTAAACCCGCTCAAAGCGC
TAGAAGAAGCGCGGGCGGTTGTGACGGCGGCCGAAAAAAACGGCAACGTC
AGGGTGCTAGAGAGCATCCGAAGCATGCATCCAATATCACCCTCGGATGA
GTCGATCTCGGGCGTGCGGGCTGCGTTGGGGGAAGATCATATCGAGGGAG
CCGGAGAAACAGCCTTGTGTTTGCTCTTGTTCTCCGTGTTTTGCTCCCGA
CCGAAGGGTCGAGGAACGTACACTGACGCCTTCGTTGACGCCGCCGCTGA
AATGGAGATAACATATCGCCCCATTGCGTTGGTTAGAAGCCCGTATCGAG
AGCGTTTCGGGACTCCGCGGCAGCCGCAGGTGACCGCTTCGGTTCTGAAC
GGTGGAGCTCAACAGGGGCAGATTGTTTTCCTCAAGGAGCACGGCTATGA
AAATGATATGCAGAGGAGTTCGGAGGCGTTGGCGTCGGTGGTGAGGTCTG
CCTGCGACAATTGGCTGGATTCAGACCTAAACCCGCTCAAAGCGCTAGAA
GAAGCGCGGGCGGTTGTGACGGCGGCCGAAAAAAACGGCAACGTCAGGGT
GCTAGAGAGCATCCGAAGCATGCATCCAATATCACCCTCGGATGAGTCGA
TCTCGGGCGTGCGGGCTGCGTTGGGGGAAGATCATATCGAGGGAGCCGGA
GAAACAGCCTTGTGTTTGCTCTTGTTCTCCGTGTTTTGCTCCCGACCGAA
GGGTCGAGGAACGTACACTGACGCCTTCGTTGACGCCGCCGCTGAAATGG
AGATAACATATCGCCCCATTGCGTTGGTTAGAAGCCCGTATCGAGAGCGT
TTCGGGACTCCGCGGCAGCCGCAGGTGACCGCTTCGGTTCTGAACGGTGG
AGCTCAACAGGGGCAGATTGTTTTCCTCAAGGAGCACGGCTATGAGGAAG
CATTGCAAGACCTGGAGGGGTTTGACATGATATGGGTATTATCTCACATG
CACCTCAACAGGGGCTGGAGCCGCAAGGTTCGACCGCCGCGACTGCCCGA
GGAACGCAAGGGGCTTTTCTCCACCCGGAGCCCACATCGACCAAACCCCG
TAGCGCTTTCATCTCTCCGGGTAGACAGGGTTGACGCCTCAGGGGGCGTG
ATCTACGTGCACGGTCTCGACCTGCTTGATGAGGAAGCATTGCAAGACCT
GGAGGGGTTTGACATGATATGGGTATTATCTCACATGCACCTCAACAGGG
GCTGGAGCCGCAAGGTTCGACCGCCGCGACTGCCCGAGGAACGCAAGGGG
CTTTTCTCCACCCGGAGCCCACATCGACCAAACCCCGTAGCGCTTTCATC
TCTCCGGGTAGACAGGGTTGACGCCTCAGGGGGCGTGATCTACGTGCACG
GTCTCGACCTGCTTGATGGCACGCCCGTGCTGGACATCAAACCGTACATC
GGGTGAGCACGCCCGTGCTGGACATCAAACCGTACATCGGGTGA