mRNA_F-serratus_M_contig1331.2477.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1331.2477.1 vs. uniprot
Match: D8LQS3_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQS3_ECTSI) HSP 1 Score: 273 bits (699), Expect = 9.270e-86 Identity = 154/255 (60.39%), Postives = 192/255 (75.29%), Query Frame = 3
Query: 201 KLEEKVALVTGAASGMGKATAIAFAREGAKVVLADRKQDVF-DVAKEIRAAGGEAVAVIFDASKESDCKHVVDTALESFGGLHVAFNNHGVTWFGKYATAVEEDITATLDINLKSHVFCFKYQIPAMANS-GGKGSIIVNTSVAGTRVSLGGDIGHSGVYAASKAGADMLMKYAAIEGAASGIRVNAVAPGFTDTPMFNTLPPEIAEAVIKSTHVIQRVIKPEEIAKLVVFLASDDAAMATGSVYPMDGGFGIKA 959
KLE VALVTGA+ G+GK+TAIAFA+EGAKVV+A R++D +VA EI+AAGG+ + DASKE+DCK +VDTA+E FGGLHVAFNN GV +A E+ I L+IN+KS +CFKYQIPAM N+ GGKGSIIVNTS R + + G+Y+ASKA A+MLMKYAAIEGAASG+RVN+V+PG +TP++ +P E AV +T +I R IKPEEIA +V+FLAS+DAAM TGS Y MDGG+ IKA
Sbjct: 2 KLEGCVALVTGASGGIGKSTAIAFAKEGAKVVIAARREDKLKEVADEIKAAGGDVALAVGDASKEADCKKMVDTAIEKFGGLHVAFNNAGVFRAVPFADITEDTIDDLLNINVKSLAWCFKYQIPAMKNTAGGKGSIIVNTSSTALRTTALPGMAGGGMYSASKAAAEMLMKYAAIEGAASGVRVNSVSPGHVETPIYGEMPRETLVAVTGTTQLIARPIKPEEIANVVIFLASEDAAMVTGSTYTMDGGWAIKA 256
BLAST of mRNA_F-serratus_M_contig1331.2477.1 vs. uniprot
Match: D8LQS1_ECTSI (Short-chain dehydrogenase/reductase SDR n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQS1_ECTSI) HSP 1 Score: 264 bits (675), Expect = 3.920e-82 Identity = 151/258 (58.53%), Postives = 188/258 (72.87%), Query Frame = 3
Query: 192 MTGKLEEKVALVTGAASGMGKATAIAFAREGAKVVLADRKQDVFD-VAKEIRAAGGEAVAVIFDASKESDCKHVVDTALESFGGLHVAFNNHGVTWFGKYATAVEEDITATLDINLKSHVFCFKYQIPAMANS-GGKGSIIVNTSVAGTRVSLGGDIGHSGVYAASKAGADMLMKYAAIEGAASGIRVNAVAPGFTDTPMFNTLPPEIAEAVIKSTHVIQRVIKPEEIAKLVVFLASDDAAMATGSVYPMDGGFGIKA 959
M KLE VALVTGA+SG+GKATA AFA+EGAKVV+A R++ D VA EI++AGGE V+ D SKE DCK +VDTA+E FGGLHVAFNN GV + E+ I L+ N+KS +C KYQIPAM ++ GGKGSIIVNTSV G R S + +G+Y+ASKA A+MLMKYAAIEGAASG+RVN+VAPG +TP+F +P + A +T ++ R PEEIAK+V+FLAS+DA M TGS Y MDGG+ +KA
Sbjct: 1 MAMKLEGCVALVTGASSGIGKATATAFAKEGAKVVIAARREVKLDEVAAEIKSAGGEVAVVVGDVSKEMDCKKMVDTAIEKFGGLHVAFNNAGVFKTVPFVDITEDTIDDILNTNVKSIAWCLKYQIPAMKDTAGGKGSIIVNTSVTGLRPSALPGLTGAGMYSASKAAAEMLMKYAAIEGAASGVRVNSVAPGLVETPIFGDMPVDTLVAFAGATQLVPRPCAPEEIAKVVIFLASEDATMVTGSTYTMDGGWAMKA 258
BLAST of mRNA_F-serratus_M_contig1331.2477.1 vs. uniprot
Match: A0A835YRJ1_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRJ1_9STRA) HSP 1 Score: 200 bits (508), Expect = 2.640e-57 Identity = 122/259 (47.10%), Postives = 168/259 (64.86%), Query Frame = 3
Query: 198 GKLEEKVALVTGAASGMGKATAIAFAREGAKVVLADRKQDVFDVA-KEIRAAGGEAVAVIFDASKESDCKHVVDTALESFGGLHVAFNNHGVTWFGKYATAVEEDITATL-----DINLKSHVFCFKYQIPAMANSGGKGSIIVNTSVAGTRVSLGGDIGHSGVYAASKAGADMLMKYAAIEGAASGIRVNAVAPGFTDTPMFNTLPPEIAEAVIKSTHVIQRVIKPEEIAKLVVFLASDDAAMATGSVYPMDGGFGIK 956
G+ +KVA+VTGA+SG+G ATA A EGAKVVLA R Q+ D A I+AAGGEA+ V DAS + D K +VD ALE++G ++V+F N G+ Y TAV ++T T+ D N+K + KYQ+ A+ SGGKGS+++N+S AG V+ +G YA++KA AD+LMKYAAIE G RVN++APG T + P + + + K+ H++ R +PEEIA+ V FLASDDA+ TG+V DGGF +K
Sbjct: 2 GRFTDKVAIVTGASSGIGLATAQQMAAEGAKVVLAARGQEKLDKAVASIKAAGGEAIGVTMDASVDEDNKRLVDKALETYGAVNVSFINAGI-----YRTAVAAEVTKTILDELYDTNVKGVAYALKYQLAAIEKSGGKGSVVINSSCAGGNVTAFPVFRSNGPYASTKAAADILMKYAAIEAIDHGTRVNSIAPGVVATGL-GDFPEDAFDEMGKTVHLMPRAGRPEEIARCVCFLASDDASFVTGTVLYADGGFSLK 254
BLAST of mRNA_F-serratus_M_contig1331.2477.1 vs. uniprot
Match: A0A835YQ90_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ90_9STRA) HSP 1 Score: 190 bits (483), Expect = 1.240e-53 Identity = 117/250 (46.80%), Postives = 164/250 (65.60%), Query Frame = 3
Query: 213 KVALVTGAASGMGKATAIAFAREGAKVVLADRKQDVFDVAKE-IRAAGGEAVAVIFDASKESDCKHVVDTALESFGGLHVAFNNHGVTWFGKYATAVEEDITATL-DINLKSHVFCFKYQIPAMANSGGKGSIIVNTSVAGTRVSLGGDIGHSGVYAASKAGADMLMKYAAIEGAASGIRVNAVAPGFTDTPMFNTLPPEIAEAVIKSTHVIQRVIKPEEIAKLVVFLASDDAAMATGSVYPMDGGFGIK 956
KVA++TGA+SG+G A A A EGAKVVLA R QD A + I+AAGGEA+ V+ DAS + D K +VDT LE++G L+++F N GV K + V+ + L D+N+K + KYQ+PA+ SGGKGS+++N+S AG+ V+ +G YA++KA D+LMKYAAIE G RVN++APG T + P E+ +++ K H++ R +PEEIA+ V FLASDDA+ TG+V DGG +K
Sbjct: 6 KVAIITGASSGIGLAAAQQMAAEGAKVVLAARGQDRLGKAVDSIKAAGGEAIGVVMDASIDEDNKRLVDTTLETYGSLNLSFINAGVH-LAKPISEVDGSMLDKLYDVNVKGVAYALKYQLPAIEKSGGKGSVVINSSCAGSTVTAFPIFKGNGPYASTKAAVDILMKYAAIEAIDHGTRVNSIAPGAIYTSLVEA-PEEVFDSIGKMVHLMPRAGRPEEIARCVCFLASDDASFVTGTVMIADGGASLK 253
BLAST of mRNA_F-serratus_M_contig1331.2477.1 vs. uniprot
Match: A0A835ZCI5_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCI5_9STRA) HSP 1 Score: 184 bits (468), Expect = 2.220e-51 Identity = 113/255 (44.31%), Postives = 154/255 (60.39%), Query Frame = 3
Query: 201 KLEEKVALVTGAASGMGKATAIAFAREGAKVVLADRKQDVFDVAK-EIRAAGGEAVAVIFDASKESDCKHVVDTALESFGGLHVAFNNHGVTWFGKYATAVEEDITATLDINLKSHVFCFKYQIPAMANSGGKGSIIVNTSVAGTRVSLGGDIGHSGVYAASKAGADMLMKYAAIEGAASGIRVNAVAPGFTDTPMFNT-LPPEIAEAVIKSTHVIQRVIKPEEIAKLVVFLASDDAAMATGSVYPMDGGFGIKA 959
+ E +VA+VTGA+SGMG ATA A EGAKVV+ R +D + A +I+A GG+ +AV D SK++ K +VD AL ++G LH+AF N G EE D+N+KS F K+ +PA+ SGG GS+I+N+S R + G+Y+ASKA ADM+MKYAAIE + RVN++APG T + + E A ++ RV PEEIA V FLASD+A TGSV+ +DGG+G+KA
Sbjct: 5 RFEGRVAVVTGASSGMGLATAAQLAAEGAKVVMVARTKDKLEAAAADIKAKGGDVLAVAADVSKDAANKEIVDAALSAYGKLHIAFLNAGTYGGAPVDQVTEELFDKIFDVNVKSVAFGLKHVLPAIEKSGGGGSVIINSSGMALRATANPAFAGGGLYSASKAAADMVMKYAAIEASKHKTRVNSIAPGIVQTAIMGEGMTDESYNAFAAPVSLVGRVGTPEEIAPFVCFLASDEATFITGSVHEVDGGWGLKA 259
BLAST of mRNA_F-serratus_M_contig1331.2477.1 vs. uniprot
Match: A0A835ZEC4_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC4_9STRA) HSP 1 Score: 181 bits (459), Expect = 5.680e-50 Identity = 117/261 (44.83%), Postives = 153/261 (58.62%), Query Frame = 3
Query: 201 KLEEKVALVTGAASGMGKATAIAFAREGAKVVLADRKQDVFDVA-KEIRAAGGEAVAVIFDASKESDCKHVVDTALESFGGLHVAFNNHGVTWFGKYATA-----VEEDITATLDINLKSHVFCFKYQIPAMANSGGKGSIIVNTSVAGTRVSLGGDIGHSGVYAASKAGADMLMKYAAIEGAASGIRVNAVAPGFTDTPMFNTL----PPEIAEAVIKSTHVIQRVIKPEEIAKLVVFLASDDAAMATGSVYPMDGGFGI 953
+ E KVA+VTGA++G+G AT REGAKVVL R QD D A EI+A G+ + D SKE+ K +VD A+ +G L VAF N G +A A E + +D N KS VF FKY +PA+ SGG GSI+VN+S AG+ S YAASKA DML+KYAA+E A RV +VAPG TP+F E+ + + K+ ++QR +PEE+A+ V FL SDDA+ TGSV+ +DGG I
Sbjct: 5 RFEGKVAIVTGASTGIGLATTAQLVREGAKVVLVSRSQDKLDAAVAEIKAKDGQVTTLAADVSKEATNKAMVDLAMSKYGRLDVAFFNAGTFAGAPFAEASLGHVTNEMVDTVMDTNFKSVVFGFKYALPAIEKSGGHGSIVVNSSAAGSTASAKSVCAGIAPYAASKAAVDMLVKYAAVEAAPHNTRVTSVAPGTVLTPIFQLFGDMKDSEVTD-MAKAIQLMQRAGRPEEVARFVCFLLSDDASFVTGSVHSVDGGASI 264
BLAST of mRNA_F-serratus_M_contig1331.2477.1 vs. uniprot
Match: A0A836CAF4_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAF4_9STRA) HSP 1 Score: 178 bits (451), Expect = 5.590e-49 Identity = 110/255 (43.14%), Postives = 158/255 (61.96%), Query Frame = 3
Query: 198 GKLEEKVALVTGAASGMGKATAIAFAREGAKVVLADRKQDVFDVAKE-IRAAGGEAVAVIFDASKESDCKHVVDTALESFGGLHVAFNNHGVTWFGKYATAVEEDITATLDINLKSHVFCFKYQIPAMANSGGKGSIIVNTSVAGTRVSLGGDIGHSGVYAASKAGADMLMKYAAIEGAASGIRVNAVAPGFTDTPMFNTLPPEIAEAVIKSTHVIQRVIKPEEIAKLVVFLASDDAAMATGSVYPMDGGFGIKA 959
G+ +V +VTG +SG+G ATA AREG KVVLA R ++ + A + I+A+GGEA V+ DASKE D K +VD L+ + L V+F N G+ K +E + L N+KS KYQ+PA+A SGG G+I++N+S+AG+ V + +G YAA+KA ADMLM++AA+E + G ++N++APG T + + LP + E K +V+ R +PEEIA FL SDDA+ G+V DGG +KA
Sbjct: 2 GRFTGRVCVVTGGSSGIGLATAEQLAREGGKVVLAARGKERLEKAVDGIKASGGEAFGVVADASKEDDNKRLVDAVLDKYHRLDVSFINAGIHRAAKAVDVTDEMLDELLAANVKSVALGLKYQLPAIAKSGGGGAIVINSSIAGSNVKTRKEFVGNGPYAATKAAADMLMRHAAVEASKQGTQINSIAPGVVKTNLLD-LPDDAYEEFGKGANVMHRTGRPEEIAH---FLLSDDASFVMGTVLTADGGHALKA 252
BLAST of mRNA_F-serratus_M_contig1331.2477.1 vs. uniprot
Match: A0A835ZCX6_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCX6_9STRA) HSP 1 Score: 178 bits (451), Expect = 7.700e-49 Identity = 113/252 (44.84%), Postives = 151/252 (59.92%), Query Frame = 3
Query: 213 KVALVTGAASGMGKATAIAFAREGAKVVLADRKQDVFDVA-KEIRAAGGEAVAVIFDASKESDCKHVVDTALESFGGLHVAFNNHGVTWFGKYATAVEEDITATLDINLKSHVFCFKYQIPAMANSGGKGSIIVNTSVAGTRVSLGGDIGHSGVYAASKAGADMLMKYAAIEGAASGIRVNAVAPGFTDTPMFNTLPPEIAEAVI----KSTHVIQRVIKPEEIAKLVVFLASDDAAMATGSVYPMDGGFGI 953
KVA+VTGA++GMG AT REGAKVV+ R QD D A EI+A G+ + D S+E+ K +V+ A+ +G L + F N G A A+ L N KS VF FKY +PA+ SGG+GSI+VN+SVAG+ V + VY+ASKA DML+KYAA+E A RVN++APG TP + P + ++ I K +IQR PEE+AK V FLASD+A+ TGSV+ +DGG +
Sbjct: 17 KVAIVTGASTGMGLATTAQLVREGAKVVMVSRSQDKLDAAVAEIKAKVGQVTTLAADVSQEATNKAMVELAMAKYGRLDIVFFNAGTFEGALLAQAI-------LATNFKSAVFGFKYALPAIEKSGGQGSIVVNSSVAGSAVCALPRAAGAAVYSASKAAVDMLVKYAAVEAAPHNTRVNSIAPGTVRTPFLQGVHPGLQDSDIDRGAKGIQLIQRAASPEEVAKFVCFLASDEASFVTGSVHLVDGGAAV 261
BLAST of mRNA_F-serratus_M_contig1331.2477.1 vs. uniprot
Match: A0A836C9I6_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9I6_9STRA) HSP 1 Score: 176 bits (447), Expect = 2.030e-48 Identity = 111/249 (44.58%), Postives = 153/249 (61.45%), Query Frame = 3
Query: 213 KVALVTGAASGMGKATAIAFAREGAKVVLADRKQDVFDVAKEI-RAAGGEAVAVIFDASKESDCKHVVDTALESFGGLHVAFNNHGVTWFGKYATAVEEDITATLDINLKSHVFCFKYQIPAMANSGGKGSIIVNTSVAGTRVSLGGDIGHSGVYAASKAGADMLMKYAAIEGAASGIRVNAVAPGFTDTPMFNTLPPEIAEAVIKSTHVIQRVIKPEEIAKLVVFLASDDAAMATGSVYPMDGGFGIK 956
KV +VTG +SG+G ATA A++G VVLA R QD + A +I +A+GGEA VI DASK+ D K +VD LE + L V+F N G+ E + N+K F KYQ+PA+ SGG GSI++N+SVAG V+ + G +G ++ASKAGADMLM++AAIE + G RVN++APG T N + E+ + + + ++ R +PEEIA V FL SD+A+ TG+V DGG IK
Sbjct: 2 KVCVVTGGSSGIGLATAQLLAKQGGAVVLAARGQDRLNKAVDIIKASGGEAFGVIADASKDEDNKQLVDAVLEKYHRLDVSFINAGIYRPATLTEVTEATVDELFATNVKGVAFALKYQLPAIEKSGGHGSIVINSSVAGRVVAEMPEFGGNGPFSASKAGADMLMRHAAIEASRHGTRVNSIAPGIVHTGAAN-MSQEVWDVLGTTMSLMARAGRPEEIAACVCFLLSDEASFVTGTVMVADGGVSIK 249
BLAST of mRNA_F-serratus_M_contig1331.2477.1 vs. uniprot
Match: A0A7S8HE06_9HYPH (SDR family oxidoreductase n=1 Tax=Kaustia mangrovi TaxID=2593653 RepID=A0A7S8HE06_9HYPH) HSP 1 Score: 176 bits (446), Expect = 3.380e-48 Identity = 117/257 (45.53%), Postives = 156/257 (60.70%), Query Frame = 3
Query: 204 LEEKVALVTGAASGMGKATAIAFAREGAKVVLADRKQDVFD-VAKEIRAAGGEAVAVIFDASKESDCKHVVDTALESFGGLHVAFNNHGVTWFGKYA---TAVEEDITATLDINLKSHVFCFKYQIPAMANSGGKGSIIVNTSVAGTRVSLGGDIGHSGVYAASKAGADMLMKYAAIEGAASGIRVNAVAPGFTDTPMFNTLPPEIAE---AVIKSTHVIQRVIKPEEIAKLVVFLASDDAAMATGSVYPMDGGFGI 953
L+ K A+VTGA+SG+G+ATA FAREGA+VV+A R+Q D + EI GGEAVA+ D +E+ K +V+TAL+ FGGL +AFNN G+ G+ A T ED TLD NL C K+Q+PAMA GG GS+I+ +S G + G YAASKAG LMK A+E A G+RVNA+ PG TDTP T P A ++ H ++R+ +PEEIA + LASD ++ TG+ + DGG +
Sbjct: 4 LQGKTAIVTGASSGIGRATARLFAREGARVVVAARRQAELDTLVSEIATRGGEAVAIAGDIREEATAKALVETALDRFGGLDIAFNNAGMV--GETAGIDTLSAEDWHTTLDTNLTGAFLCAKHQLPAMAQRGG-GSLILTSSFVGYSAGMPG----MAAYAASKAGMIGLMKVLAVEYGAKGVRVNALLPGGTDTPASVTNAPGATPELLAFVEGLHALKRLARPEEIAHSALHLASDASSFVTGATFLADGGVSV 253 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1331.2477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1331.2477.1 >prot_F-serratus_M_contig1331.2477.1 ID=prot_F-serratus_M_contig1331.2477.1|Name=mRNA_F-serratus_M_contig1331.2477.1|organism=Fucus serratus male|type=polypeptide|length=257bp MTGKLEEKVALVTGAASGMGKATAIAFAREGAKVVLADRKQDVFDVAKEIback to top mRNA from alignment at F-serratus_M_contig1331:111915..119910- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1331.2477.1 ID=mRNA_F-serratus_M_contig1331.2477.1|Name=mRNA_F-serratus_M_contig1331.2477.1|organism=Fucus serratus male|type=mRNA|length=7996bp|location=Sequence derived from alignment at F-serratus_M_contig1331:111915..119910- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1331:111915..119910- >mRNA_F-serratus_M_contig1331.2477.1 ID=mRNA_F-serratus_M_contig1331.2477.1|Name=mRNA_F-serratus_M_contig1331.2477.1|organism=Fucus serratus male|type=CDS|length=1542bp|location=Sequence derived from alignment at F-serratus_M_contig1331:111915..119910- (Fucus serratus male)back to top |