mRNA_F-serratus_M_contig1331.2485.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1331.2485.1
Unique NamemRNA_F-serratus_M_contig1331.2485.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1331.2485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1331contigF-serratus_M_contig1331:236570..236923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size356
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929304.6669102-UTR-F-serratus_M_contig1331:236569..2366171622929304.6669102-UTR-F-serratus_M_contig1331:236569..236617Fucus serratus maleUTRF-serratus_M_contig1331 236570..236617 +
1690962791.4926069-UTR-F-serratus_M_contig1331:236569..2366171690962791.4926069-UTR-F-serratus_M_contig1331:236569..236617Fucus serratus maleUTRF-serratus_M_contig1331 236570..236617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929304.6830554-CDS-F-serratus_M_contig1331:236617..2369231622929304.6830554-CDS-F-serratus_M_contig1331:236617..236923Fucus serratus maleCDSF-serratus_M_contig1331 236618..236923 +
1690962791.506499-CDS-F-serratus_M_contig1331:236617..2369231690962791.506499-CDS-F-serratus_M_contig1331:236617..236923Fucus serratus maleCDSF-serratus_M_contig1331 236618..236923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1331.2485.1prot_F-serratus_M_contig1331.2485.1Fucus serratus malepolypeptideF-serratus_M_contig1331 236618..236923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1331.2485.1

>prot_F-serratus_M_contig1331.2485.1 ID=prot_F-serratus_M_contig1331.2485.1|Name=mRNA_F-serratus_M_contig1331.2485.1|organism=Fucus serratus male|type=polypeptide|length=102bp
MSKQISRSMRIDVGRDGGDAAMGIASHEGDCHSERKDSRRITVDSSSRNP
AIMLLVFLGLSLWTSPTSMTAEAFATLATASQWKRPQGIAVFNSNSCGDG
KS
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mRNA from alignment at F-serratus_M_contig1331:236570..236923+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1331.2485.1 ID=mRNA_F-serratus_M_contig1331.2485.1|Name=mRNA_F-serratus_M_contig1331.2485.1|organism=Fucus serratus male|type=mRNA|length=354bp|location=Sequence derived from alignment at F-serratus_M_contig1331:236570..236923+ (Fucus serratus male)
CAACGCAGGACTACAGTAGGACCCAAACATTACGCGTAACCGAGCTTGAT
GTCTAAACAGATATCACGCAGCATGCGTATCGACGTTGGTAGAGATGGAG
GAGACGCTGCGATGGGCATTGCTTCTCACGAAGGCGATTGCCACAGCGAA
CGTAAGGATTCTCGTAGAATCACCGTTGATTCCAGCAGCCGCAACCCGGC
AATCATGCTCCTAGTTTTCCTTGGTCTCTCACTATGGACATCACCCACCT
CCATGACTGCAGAGGCCTTTGCTACCTTAGCCACGGCTTCTCAGTGGAAG
CGACCGCAAGGTATCGCAGTTTTCAATAGCAACAGCTGCGGCGATGGCAA
ATCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1331:236570..236923+

>mRNA_F-serratus_M_contig1331.2485.1 ID=mRNA_F-serratus_M_contig1331.2485.1|Name=mRNA_F-serratus_M_contig1331.2485.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig1331:236570..236923+ (Fucus serratus male)
ATGTCTAAACAGATATCACGCAGCATGCGTATCGACGTTGGTAGAGATGG
AGGAGACGCTGCGATGGGCATTGCTTCTCACGAAGGCGATTGCCACAGCG
AACGTAAGGATTCTCGTAGAATCACCGTTGATTCCAGCAGCCGCAACCCG
GCAATCATGCTCCTAGTTTTCCTTGGTCTCTCACTATGGACATCACCCAC
CTCCATGACTGCAGAGGCCTTTGCTACCTTAGCCACGGCTTCTCAGTGGA
AGCGACCGCAAGGTATCGCAGTTTTCAATAGCAACAGCTGCGGCGATGGC
AAATCCATGTCTAAACAGATATCACGCAGCATGCGTATCGACGTTGGTAG
AGATGGAGGAGACGCTGCGATGGGCATTGCTTCTCACGAAGGCGATTGCC
ACAGCGAACGTAAGGATTCTCGTAGAATCACCGTTGATTCCAGCAGCCGC
AACCCGGCAATCATGCTCCTAGTTTTCCTTGGTCTCTCACTATGGACATC
ACCCACCTCCATGACTGCAGAGGCCTTTGCTACCTTAGCCACGGCTTCTC
AGTGGAAGCGACCGCAAGGTATCGCAGTTTTCAATAGCAACAGCTGCGGC
GATGGCAAATCC
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