mRNA_F-serratus_M_contig1330.2473.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A2R4QQ38_9PHAE (50S ribosomal protein L23 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ38_9PHAE) HSP 1 Score: 105 bits (261), Expect = 1.410e-27 Identity = 53/72 (73.61%), Postives = 59/72 (81.94%), Query Frame = 1
Query: 1 LTKTKLNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCNQTEKNVLSG 216
+ K KL+SII LIKYP+TTPKTLLLLE NQY FLVDPK NKLNIKKAI F+F+VKVIKVNSCN +K G
Sbjct: 1 MVKIKLSSIIDLIKYPVTTPKTLLLLENNQYTFLVDPKLNKLNIKKAIEFLFNVKVIKVNSCNLPKKKRRVG 72
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A141BSN9_9PHAE (50S ribosomal protein L23, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSN9_9PHAE) HSP 1 Score: 100 bits (250), Expect = 6.480e-26 Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 1
Query: 1 LTKTKLNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCNQTEKNVLSG 216
+ K KL+S+I LIKYP+TTPKTLLLLE NQY F+VDPK NK NIKK+I F+F+VKVIKVNSCN +K G
Sbjct: 1 MVKRKLSSLIDLIKYPVTTPKTLLLLENNQYTFMVDPKLNKFNIKKSIEFLFNVKVIKVNSCNLPKKKRRVG 72
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A0R6LUV2_UNDPI (50S ribosomal protein L23, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUV2_UNDPI) HSP 1 Score: 90.5 bits (223), Expect = 8.270e-22 Identity = 46/72 (63.89%), Postives = 54/72 (75.00%), Query Frame = 1
Query: 1 LTKTKLNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCNQTEKNVLSG 216
+ + K +S I LIKYP+TT KT LLLE NQY FLVDPK NK++IKKAI F+FDV VIKVNSCN +K G
Sbjct: 1 MARIKFSSSIDLIKYPVTTIKTNLLLENNQYTFLVDPKLNKVSIKKAIEFLFDVSVIKVNSCNLPKKKRRVG 72
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A8F0JZN8_9PHAE (Ribosomal protein L23 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZN8_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 6.750e-21 Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query: 1 LTKTKLNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCNQTEKNVLSGDLL 225
+ + K +S I LIKYPI+T KT LLLE NQY FLVDP K+N+KKAI F+F+VKVIKVNSCN +K G +
Sbjct: 1 MARIKFSSTIDLIKYPISTNKTSLLLENNQYTFLVDPVLTKINVKKAIEFLFNVKVIKVNSCNLPKKKRRVGQFI 75
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A1I9LVJ8_9PHAE (50S ribosomal protein L23, chloroplastic n=8 Tax=Ectocarpales TaxID=2877 RepID=A0A1I9LVJ8_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 2.740e-20 Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 1
Query: 19 NSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCNQTEKNVLSG 216
+S I LIKYP+ T KT LL E NQY FLVDP+ NK+NIKKAI F+FDVK+IK+NSCN +K G
Sbjct: 7 SSSIDLIKYPLITSKTNLLFEHNQYTFLVDPRLNKVNIKKAIEFLFDVKIIKINSCNLPKKKRRIG 72
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A8E5FAP4_9PHAE (Ribosomal protein L23 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E5FAP4_9PHAE) HSP 1 Score: 84.0 bits (206), Expect = 4.140e-19 Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 1
Query: 7 KTKLNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCN 189
K +LNS I LIKYP+ T K L+ KNQY FLVDP+ K+NIKKAI F+FD+K+IK+NSCN
Sbjct: 3 KMELNSSIDLIKYPLNTTKAKGLISKNQYTFLVDPRLTKINIKKAIEFLFDIKIIKINSCN 63
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A8F0F780_9PHAE (Ribosomal protein L23 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F780_9PHAE) HSP 1 Score: 82.0 bits (201), Expect = 1.820e-18 Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 1
Query: 16 LNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCNQTEKNVLSG 216
+NS I LIKYP+TT KT LLLE NQY FLVD K K+ IKKAI +F+VKVIK+NSCN +K G
Sbjct: 6 INSSIDLIKYPMTTDKTNLLLENNQYTFLVDRKMTKIAIKKAIELLFNVKVIKINSCNLPKKKRRVG 72
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A8F0JZQ2_9PHAE (Ribosomal protein L23 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZQ2_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 1.480e-17 Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = 1
Query: 19 NSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCNQTEKNVLSGDLLVF 231
+S I LIK P+ T KT LLLE NQY FLVDPK K+N+K+AI F+F+V VIK+NSCN +K G + F
Sbjct: 7 SSSIDLIKCPVITIKTNLLLENNQYTFLVDPKLTKVNVKQAIEFLFNVNVIKINSCNLPKKKRRMGKSIGF 77
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A2I4Q2I3_9PHAE (50S ribosomal protein L23, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2I3_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 6.650e-17 Identity = 39/74 (52.70%), Postives = 50/74 (67.57%), Query Frame = 1
Query: 1 LTKTKLNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCNQTEKNVLSGDL 222
+ K ++ + LIK P+TT KT L EKNQY FLVDPK +K IKKAI F+F VK+IK+N+CN +K G L
Sbjct: 1 MAKINFSTSLDLIKQPLTTLKTSQLFEKNQYTFLVDPKLDKPTIKKAIEFLFSVKIIKINTCNLPKKTRRVGQL 74
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A222AHH3_9CRYP (Ribosomal protein L23 n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A222AHH3_9CRYP) HSP 1 Score: 75.9 bits (185), Expect = 4.500e-16 Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 1
Query: 16 LNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*FVFDVKVIKVNSCNQTEKNVLSGDLL 225
L +I LIKYPI T K LLE NQY F VDPK NKL+IKKAI ++F+VKVI VN+ N K G +
Sbjct: 3 LKHLIDLIKYPIITDKATKLLELNQYTFAVDPKSNKLHIKKAIEYLFNVKVISVNTANPPAKQRRIGKFI 72 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1330.2473.1 >prot_F-serratus_M_contig1330.2473.1 ID=prot_F-serratus_M_contig1330.2473.1|Name=mRNA_F-serratus_M_contig1330.2473.1|organism=Fucus serratus male|type=polypeptide|length=49bp LTKTKLNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*back to top mRNA from alignment at F-serratus_M_contig1330:24113..24381- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1330.2473.1 ID=mRNA_F-serratus_M_contig1330.2473.1|Name=mRNA_F-serratus_M_contig1330.2473.1|organism=Fucus serratus male|type=mRNA|length=269bp|location=Sequence derived from alignment at F-serratus_M_contig1330:24113..24381- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1330:24113..24381- >mRNA_F-serratus_M_contig1330.2473.1 ID=mRNA_F-serratus_M_contig1330.2473.1|Name=mRNA_F-serratus_M_contig1330.2473.1|organism=Fucus serratus male|type=CDS|length=294bp|location=Sequence derived from alignment at F-serratus_M_contig1330:24113..24381- (Fucus serratus male)back to top |