mRNA_F-serratus_M_contig133.2472.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig133.2472.1
Unique Name	mRNA_F-serratus_M_contig133.2472.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

[Close]

BLAST of mRNA_F-serratus_M_contig133.2472.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.170e-31
Identity = 52/86 (60.47%), Postives = 70/86 (81.40%), Query Frame = 1

Query:    7 CYADDEEERIMSNMYASDDMTSAVCRDHCKDNNALYYATQFGNECWCGTSDVFADYEKHGKGTCHMRCAGDTSTACGGVYAFSLYR 264
            CY D++ +R++S+M +SDDMT+AVCR+HC D +A YY TQF +ECWCGTSD  ADYE+HG+G CHM C+GD + ACGG  A+SL++
Sbjct: 1251 CYTDNKGDRVLSDMISSDDMTAAVCREHCADKDAPYYGTQFSSECWCGTSDDDADYERHGEGVCHMACSGDGTVACGGYDAYSLFK 1336

[Close]

BLAST of mRNA_F-serratus_M_contig133.2472.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 4.790e-30
Identity = 50/86 (58.14%), Postives = 68/86 (79.07%), Query Frame = 1

Query:    7 CYADDEEERIMSNMYASDDMTSAVCRDHCKDNNALYYATQFGNECWCGTSDVFADYEKHGKGTCHMRCAGDTSTACGGVYAFSLYR 264
            CYAD + +R++ +M +SD+MT+ VCR+HC D +A YY TQF +ECWCGTSD  ADYE+HG+G CHM C+GD + ACGG  A+SL++
Sbjct:  905 CYADSKGDRVLFDMISSDNMTAGVCREHCADKDAPYYGTQFSSECWCGTSDDEADYERHGEGVCHMACSGDGTVACGGYDAYSLFK 990

[Close]

BLAST of mRNA_F-serratus_M_contig133.2472.1 vs. uniprot
Match: D8LGP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP4_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.620e-29
Identity = 52/95 (54.74%), Postives = 69/95 (72.63%), Query Frame = 1

Query:    7 CYADDEEERIMSNMYASDDMTSAVCRDHCKDNNALYYATQFGNECWCGTSDVFADYEKHGKGTCHMRCAGDTSTACGGVYAFSLYRL-IDESPEP 288
            C++D  E R+M +M   + MT+ +CRDHC+ ++A+YYATQ+GNEC+CG S    DYE HG GTCHM C GD+ +ACGG +AFSLY+   D  PEP
Sbjct:  149 CWSDANESRVMEDMLVDEGMTTDMCRDHCESSDAVYYATQYGNECFCGYSSDPEDYETHGLGTCHMHCGGDSGSACGGYWAFSLYQFGADGMPEP 243

[Close]

BLAST of mRNA_F-serratus_M_contig133.2472.1 vs. uniprot
Match: A0A6H5KBW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBW3_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.130e-29
Identity = 52/96 (54.17%), Postives = 71/96 (73.96%), Query Frame = 1

Query:    7 CYADDEEERIMSNMYASDDMTSAVCRDHCKDNNALYYATQFGNECWCGTSDVFADYEKHGKGTCHMRCAGDTSTACGGVYAFSLYRL-IDESPEPA 291
            C++D  E R+M +M   + MT+ +CRDHC+ ++A+YYATQ+GNEC+CG S    DYE HG GTCHM CAGD+ +ACGG +AFSL++   D  P+PA
Sbjct:  215 CWSDLGESRVMQDMLVDESMTTDMCRDHCESSDAVYYATQYGNECFCGYSSDPEDYETHGPGTCHMHCAGDSGSACGGYWAFSLFKFGADGMPDPA 310

[Close]

BLAST of mRNA_F-serratus_M_contig133.2472.1 vs. uniprot
Match: A0A6H5JLD0_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD0_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.870e-25
Identity = 44/87 (50.57%), Postives = 64/87 (73.56%), Query Frame = 1

Query:    7 CYADDEEERIMSN-MYASDDMTSAVCRDHCKDNNALYYATQFGNECWCGTSDVFADYEKHGKGTCHMRCAGDTSTACGGVYAFSLYR 264
            C+ADD E+R++ N +    DMT  VCR +C+  +A +YATQ+G+ECWCG S+   DY++HG G+C M C+GD++T CGG  AF+LY+
Sbjct:  108 CFADDPEDRLLGNEIKHQPDMTQVVCRVYCEGYDAQFYATQYGDECWCGMSNDEEDYKRHGSGSCLMECSGDSATVCGGFNAFNLYK 194

[Close]

BLAST of mRNA_F-serratus_M_contig133.2472.1 vs. uniprot
Match: D8LED5_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED5_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 2.700e-24
Identity = 46/91 (50.55%), Postives = 66/91 (72.53%), Query Frame = 1

Query:    7 CYADDEEERIMSN-MYASDDMTSAVCRDHCKDNNALYYATQFGNECWCGTSDVFADYEKHGKGTCHMRCAGDTSTACGGVYAFSLYRLIDE 276
            C+ADD E+R++ N +    DMT AVCR +C+  +A +YATQ+G+ECWCG S+   DY++HG G+C M C+GD  T CGG  AF+LY+ +D+
Sbjct:  362 CFADDPEDRLLGNEIKYQPDMTQAVCRTYCEGYDAHFYATQYGDECWCGMSNDEEDYKRHGSGSCLMECSGDPGTVCGGNDAFNLYKNMDK 452

[Close]

BLAST of mRNA_F-serratus_M_contig133.2472.1 vs. uniprot
Match: A0A6H5JN72_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN72_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 9.840e-24
Identity = 45/88 (51.14%), Postives = 66/88 (75.00%), Query Frame = 1

Query:    7 CYADDEEERIMSN-MYASDDMTSAVCRDHCKDNNALYYATQFGNECWCGTSDVFADYEKHGKGTCHMRCAGDTSTACGGVYAFSLYRL 267
            C+ADD ++R++ N +    DMT AVCR +C+   A +YATQ+G+ECWCGTSD   DY++HG G+C  +C+GD +TACGG  +F+L++L
Sbjct:  581 CFADDGDDRLLKNEIKYQPDMTQAVCRTYCEGFGAHFYATQYGDECWCGTSDDKEDYKRHGHGSCVAQCSGDPTTACGGFDSFNLFKL 668

[Close]

BLAST of mRNA_F-serratus_M_contig133.2472.1 vs. uniprot
Match: D8LED7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LED7_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 6.600e-23
Identity = 45/95 (47.37%), Postives = 68/95 (71.58%), Query Frame = 1

Query:    7 CYADDEEERIMSN-MYASDDMTSAVCRDHCKDNNALYYATQFGNECWCGTSDVFADYEKHGKGTCHMRCAGDTSTACGGVYAFSLYRLIDESPEP 288
            C+ADD E+R++ + +    DMT AVCR +C++ +A +YATQ+G+ECWCG S+   DY++HG+G+C   C+GD + ACGG  AF+L++  D   EP
Sbjct:  537 CFADDREDRLLGDEIKLQPDMTQAVCRTYCEERDAYFYATQYGDECWCGMSNDEEDYKRHGRGSCLAGCSGDPTVACGGFDAFNLFKF-DGIAEP 630

[Close]

BLAST of mRNA_F-serratus_M_contig133.2472.1 vs. uniprot
Match: D7FXK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK6_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.100e-22
Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = 1

Query:    7 CYADDEEERIMSNMYA-SDDMTSAVCRDHCKDNNALYYATQFGNECWCGTSDVFADYEKHGKGTCHMRCAGDTSTACGGVYAFSLYRLIDESPE 285
            C+ADD+E+R ++N     D+MT  VCR +C+   + +YATQ+G+ECWCG +D   +Y++HG G C   C GD + ACGG YAFSL+  +D+  +
Sbjct:  424 CFADDQEDRALANKIKFQDNMTQDVCRVYCERFGSSFYATQYGDECWCGATDDVEEYKRHGDGECIAGCFGDPAIACGGYYAFSLFEYLDDDDD 517

[Close]

BLAST of mRNA_F-serratus_M_contig133.2472.1 vs. uniprot
Match: A0A6H5JMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV6_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.530e-20
Identity = 38/87 (43.68%), Postives = 61/87 (70.11%), Query Frame = 1

Query:    7 CYADDEEERIMSN-MYASDDMTSAVCRDHCKDNNALYYATQFGNECWCGTSDVFADYEKHGKGTCHMRCAGDTSTACGGVYAFSLYR 264
            C+ADD E+R++ + +    DMT  VCR +C++ +A +YATQ+G+ECWCG S+   DY++HG+G+C   C+GD + ACG  +   +Y+
Sbjct:  115 CFADDREDRLLGDEIKLQPDMTQTVCRTYCEERDAYFYATQYGDECWCGMSEDEQDYKRHGRGSCLAGCSGDPTVACGRDFQVVIYK 201

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig133.2472.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig133.2472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FRE8_ECTSI	1.170e-31	60.47	EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288...	[more]
A0A6H5JJ37_9PHAE	4.790e-30	58.14	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LGP4_ECTSI	1.620e-29	54.74	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KBW3_9PHAE	2.130e-29	54.17	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JLD0_9PHAE	1.870e-25	50.57	WSC domain-containing protein n=1 Tax=Ectocarpus s...	[more]
D8LED5_ECTSI	2.700e-24	50.55	EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288...	[more]
A0A6H5JN72_9PHAE	9.840e-24	51.14	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
D8LED7_ECTSI	6.600e-23	47.37	EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288...	[more]
D7FXK6_ECTSI	1.100e-22	45.74	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JMV6_9PHAE	3.530e-20	43.68	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig133	contig	F-serratus_M_contig133:731932..732645 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	121.3
Seed ortholog evalue	3e-25
Seed eggNOG ortholog	2880.D8LGP4
KEGG ko	ko:K01315
KEGG Pathway	ko04080,ko04610,ko05150,ko05164,map04080,map04610,map05150,map05164
Hectar predicted targeting category	other localisation
EggNOG free text desc.	protein xylosyltransferase activity
EggNOG OGs	KOG4157@1,KOG4157@2759
EC	3.4.21.7
COG Functional cat.	U
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko01002,ko04147,ko04516
Exons	4
Model size	360
Cds size	360
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig133.2472.1	prot_F-serratus_M_contig133.2472.1	Fucus serratus male	polypeptide	F-serratus_M_contig133 731932..732645 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929304.3804822-CDS-F-serratus_M_contig133:731931..732057	1622929304.3804822-CDS-F-serratus_M_contig133:731931..732057	Fucus serratus male	CDS	F-serratus_M_contig133 731932..732057 +
1690962791.405425-CDS-F-serratus_M_contig133:731931..732057	1690962791.405425-CDS-F-serratus_M_contig133:731931..732057	Fucus serratus male	CDS	F-serratus_M_contig133 731932..732057 +
1622929304.3958812-CDS-F-serratus_M_contig133:732201..732310	1622929304.3958812-CDS-F-serratus_M_contig133:732201..732310	Fucus serratus male	CDS	F-serratus_M_contig133 732202..732310 +
1690962791.415529-CDS-F-serratus_M_contig133:732201..732310	1690962791.415529-CDS-F-serratus_M_contig133:732201..732310	Fucus serratus male	CDS	F-serratus_M_contig133 732202..732310 +
1622929304.411231-CDS-F-serratus_M_contig133:732508..732611	1622929304.411231-CDS-F-serratus_M_contig133:732508..732611	Fucus serratus male	CDS	F-serratus_M_contig133 732509..732611 +
1690962791.42334-CDS-F-serratus_M_contig133:732508..732611	1690962791.42334-CDS-F-serratus_M_contig133:732508..732611	Fucus serratus male	CDS	F-serratus_M_contig133 732509..732611 +
1622929304.426176-CDS-F-serratus_M_contig133:732623..732645	1622929304.426176-CDS-F-serratus_M_contig133:732623..732645	Fucus serratus male	CDS	F-serratus_M_contig133 732624..732645 +
1690962791.4311376-CDS-F-serratus_M_contig133:732623..732645	1690962791.4311376-CDS-F-serratus_M_contig133:732623..732645	Fucus serratus male	CDS	F-serratus_M_contig133 732624..732645 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig133:731932..732645+
coding sequence from alignment at F-serratus_M_contig133:731932..732645+

protein sequence of mRNA_F-serratus_M_contig133.2472.1

>prot_F-serratus_M_contig133.2472.1 ID=prot_F-serratus_M_contig133.2472.1|Name=mRNA_F-serratus_M_contig133.2472.1|organism=Fucus serratus male|type=polypeptide|length=120bp
MDCYADDEEERIMSNMYASDDMTSAVCRDHCKDNNALYYATQFGNECWCG
TSDVFADYEKHGKGTCHMRCAGDTSTACGGVYAFSLYRLIDESPEPAPAP
EPTPEPTPEPTSEPTSEPAS

mRNA from alignment at F-serratus_M_contig133:731932..732645+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig133.2472.1 ID=mRNA_F-serratus_M_contig133.2472.1|Name=mRNA_F-serratus_M_contig133.2472.1|organism=Fucus serratus male|type=mRNA|length=714bp|location=Sequence derived from alignment at F-serratus_M_contig133:731932..732645+ (Fucus serratus male)
ATGGATTGCTACGCTGACGACGAGGAGGAGAGGATCATGTCCAATATGTA
CGCCAGTGACGACATGACTTCGGCCGTATGCCGCGACCACTGCAAGGATA
ATAACGCCTTGTACTACGCCACCCAGGTACAGCGAAAAACTAATATTCTC
GGTTTCAGAGTGGGTCTTGGTATGTGGGAGACAGATTTTACTCGCGCTGC
CCAATATGCCCGTGCTTGTCTTCGAAACCCGACTTTGTTTTCCTCGCTAT
TCTGGGACAACGTTCCACAGTTTGGCAACGAGTGCTGGTGTGGAACTTCT
GACGTTTTCGCCGACTACGAAAAACACGGCAAAGGGACCTGTCACATGCG
ATGCGCAGGCGACACTTCGACTGCATGTGGTGAGTTCAGCTCTTACTATC
GTAGCATGTACCCCACTCCCGCTCACTGTTTCAAATCTAGGCTTATTTGT
TTTGCCTTGTATCGCCTGCTTTACTGAGCCCAGTCGAACATGCTCCCTGC
AGAGGCGTGCGAACCGTAAAGCTCATGCCGTTTGTGGATGCGAAACCTTT
ACATGCCCCATTCGTTTTACTTTTAAGGTGGAGTCTACGCCTTCAGCCTG
TACCGTTTAATCGACGAAAGCCCCGAGCCGGCGCCTGCCCCGGAGCCTAC
ACCCGAGCCGACCCCCGAGCCTACGTCCGAGTCGACCCCAAGGCCTACGT
CCGAGCCTGCTTCC

Coding sequence (CDS) from alignment at F-serratus_M_contig133:731932..732645+

>mRNA_F-serratus_M_contig133.2472.1 ID=mRNA_F-serratus_M_contig133.2472.1|Name=mRNA_F-serratus_M_contig133.2472.1|organism=Fucus serratus male|type=CDS|length=720bp|location=Sequence derived from alignment at F-serratus_M_contig133:731932..732645+ (Fucus serratus male)
ATGGATTGCTACGCTGACGACGAGGAGGAGAGGATCATGTCCAATATGTA
CGCCAGTGACGACATGACTTCGGCCGTATGCCGCGACCACTGCAAGGATA
ATAACGCCTTGTACTACGCCACCCAGATGGATTGCTACGCTGACGACGAG
GAGGAGAGGATCATGTCCAATATGTACGCCAGTGACGACATGACTTCGGC
CGTATGCCGCGACCACTGCAAGGATAATAACGCCTTGTACTACGCCACCC
AGTTTGGCAACGAGTGCTGGTGTGGAACTTCTGACGTTTTCGCCGACTAC
GAAAAACACGGCAAAGGGACCTGTCACATGCGATGCGCAGGCGACACTTC
GACTGCATGTGTTTGGCAACGAGTGCTGGTGTGGAACTTCTGACGTTTTC
GCCGACTACGAAAAACACGGCAAAGGGACCTGTCACATGCGATGCGCAGG
CGACACTTCGACTGCATGTGGTGGAGTCTACGCCTTCAGCCTGTACCGTT
TAATCGACGAAAGCCCCGAGCCGGCGCCTGCCCCGGAGCCTACACCCGAG
CCGACCCCCGAGCCTACGTCCGAGTGGAGTCTACGCCTTCAGCCTGTACC
GTTTAATCGACGAAAGCCCCGAGCCGGCGCCTGCCCCGGAGCCTACACCC
GAGCCGACCCCCGAGCCTACGTCCGAGCCTACGTCCGAGCCTGCTTCCGC
CTACGTCCGAGCCTGCTTCC