mRNA_F-serratus_M_contig133.2463.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig133.2463.1
Unique NamemRNA_F-serratus_M_contig133.2463.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig133.2463.1 vs. uniprot
Match: D7G8I9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I9_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 7.120e-67
Identity = 163/321 (50.78%), Postives = 205/321 (63.86%), Query Frame = 2
Query:   80 KRVKFCAFDLSTVDMPCEAIRDSEVPAKEVADCLTRVIDASGLLQKTLQKTAPRQGRGSVAA------VGQESFAMWRAFLRGVRTVS-VAPAASSPLVEAVKTACVGMGGEASADTVRGAAFLLLDELLPLE--RDEAPVDSPLRMRLAGFLSALIRFNLRVLLNPPPAKSSGVSLYSTHRLGSNHS--KVHEVIELTTDEIM-TKKRDDYNPTRDGATSAAVSRALRRLYGYSDEKAWGVIEEAEAFVEEVE--REDSLSAGQIVLRARQHSLETVDVVAAIRARKFVLELLSFSGVEEAIAEAQGWGEIERLSATLQR 1000
            K V+FCAFDLSTVDMP +AI DS+  AKEVA CL RV+ +S LLQ+ + K A   G    AA      +G    ++ +AF+RG++TV+ VA   S PLV + + AC  +G E S + V+ AA LLL+    LE   + A    PLR RLA  LSALIRFNLR LLNPPP KS    L S H   S     KVHEVI L ++E     K+D ++PTRDGA SA +SRALRRLY +SD  A  V+  AEAFV +++    D     +   RAR HS  TVD+VAAIRAR FVLELL F GVE A+++A+GWGE+ERLS  L++
Sbjct: 1018 KGVRFCAFDLSTVDMPTDAIEDSDAAAKEVAQCLARVVASSKLLQEGMPKRASGAGGAGKAAAVADGGIGGGLASVVKAFMRGLKTVAGVAEPDSCPLVASARGACRELGTEISTEVVKRAAALLLESFEALEGGAEVAATRCPLRQRLAIMLSALIRFNLRTLLNPPPHKS----LSSLHIADSTDKPRKVHEVILLVSEESKPASKKDAFDPTRDGAASAVLSRALRRLYEFSD--AVEVMSRAEAFVADMKGKNRDLYGDEEKASRARLHSQSTVDIVAAIRARNFVLELLEFPGVELAVSQARGWGELERLSTELRK 1332          
BLAST of mRNA_F-serratus_M_contig133.2463.1 vs. uniprot
Match: A0A6H5LA33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA33_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 1.950e-42
Identity = 117/232 (50.43%), Postives = 145/232 (62.50%), Query Frame = 2
Query:   77 RKRVKFCAFDLSTVDMPCEAIRDSEVPAKEVADCLTRVIDASGLLQKTLQKTAPRQGRGSVAA------VGQESFAMWRAFLRGVRTVS-VAPAASSPLVEAVKTACVGMGGEASADTVRGAAFLLLDELLPLERD-EAPVDS-PLRMRLAGFLSALIRFNLRVLLNPPPAKSSGVSLYSTHRLGSNHS--KVHEVIELTTDEIM-TKKRDDYNPTRDGATSAAVSRALRRL 736
            +K V+FCAFDLSTVDMP +AI DS+  AKEVA CL RV+ +S LLQ+ + K A   G    AA      +G    +  +AF+RG++TV+ VA   S PLV +V+ AC  +G E S   V+ AA LLL+    LE   E P    PLR RLA  LSALIRFNLR LLNPPP KS    L S H   S     KVHEVI+L ++E     K+D ++PTRDGA SA +SRALRR+
Sbjct: 1232 KKGVRFCAFDLSTVDMPTDAIEDSDAAAKEVAQCLARVVASSKLLQEGMPKRASGAGGAGKAAAVADGGIGGGLASAVKAFMRGLKTVAGVAEPDSCPLVSSVRAACRELGTEISTKVVKRAAALLLESFEALEGGAEVPATRCPLRQRLAIMLSALIRFNLRTLLNPPPHKS----LSSLHIADSTDKPRKVHEVIQLVSEESKPASKKDAFDPTRDGAASAVLSRALRRV 1459          
BLAST of mRNA_F-serratus_M_contig133.2463.1 vs. uniprot
Match: D7FV49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV49_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 4.130e-36
Identity = 135/389 (34.70%), Postives = 176/389 (45.24%), Query Frame = 2
Query:   44 RSTTAVGAG--GARKRVKFCAFDLSTVDMPCEAIRDSEVPAKEVADCLTRVIDASGLLQK-------TLQKTAPRQGRGSVAAVGQESFAMWRAFLRGVRTVSVAPAASSPLVEAVKTACVGMGGEASADTVRG--------AAFLLLDELLPLERD-EAPVDSPLRMRLAGFLSALIRFNLRVLLNPPPAK---------SSGVSLYSTHRLG------SNHSKVHEVIELTTDEIMTKKRDDYNPTRDGATSAAVSRALRRLYGYSDEKAWGVIEEAEAFVEE-----VEREDSLSAGQIVLRARQHSLETVDVVAAIRARKFVLELLSFSGVEEAIAEAQGWGEIERLSATLQRVRDCPDADAALSLLADVQGLKGWLGTASPWRH 1096
            R    VGAG  G  + V+ CAF+ STV MP +    SE+ A EV  CL  V+ A   ++         L+ T    G G  +         WRAF   VR  +                     G        G        A  +LL EL PLER  E  V SPLR RLA  LS+LIRF+LR+ L+ PP +         S G   Y+  +        S+ SKVH V++++                D    A+ S+AL RL G+S E A  V+  AEAF         ER+    A   V  A +    T DVV A+RARKFVL LL   GVEEAI EA GWG +E  +++L+ ++ C D D  L+LL+DV   K WL +   W H
Sbjct: 1463 RRGAVVGAGNAGPPRVVRLCAFNFSTVGMPLDTATGSELQALEVVRCLQGVVTALHKIENFHRRCNLVLKTTG---GSGDESNGNSHRLVAWRAFQHEVRAAAANXXXXXXXXXXXXXXXXXXRGRQGRRPSAGMKEKEMAKAGLVLLGELEPLERSPEGLVKSPLRDRLASMLSSLIRFHLRIRLDAPPERLTRAPEALPSCGDPSYAEAKRRAEVLPPSHFSKVHTVVDVSE--------------TDATLGASFSKALFRLEGFSCEMAVEVLSAAEAFAAADQTRLAERDGGCPAR--VESAGRLLSATADVVDAVRARKFVLSLLELEGVEEAIVEAGGWGNVEMWASSLKGLKGCADIDEPLTLLSDVGAFKAWLMSKPTWGH 1832          
BLAST of mRNA_F-serratus_M_contig133.2463.1 vs. uniprot
Match: A0A836CH73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH73_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.070e-13
Identity = 108/374 (28.88%), Postives = 154/374 (41.18%), Query Frame = 2
Query:   83 RVKFCAFDLSTVDMPCEAIRDSEVPAKEVA----------DCLTRVIDASGLLQKTLQKTAPRQGRGSVA-AVGQESFAMWRAFLRGVRTVSVAPAASSPLVEAV-KTACVGMGGEASADTVRGAAFLLLDEL----LPLERDEAPVDSP-------------LRMRLAGFLSALIRFNLRVLLNPPPA--------KSSGVSLYSTHRLGSNHSKVHEVIELTTDEIMTKKRDDYNPTRDGATSAAVSRALRRLYGYSDEKAWGVIEEAEAFVEEVEREDSLSAGQI---------------------VLRARQHSLETVDVVAAIRARKFVLELLSFSGVEEAIAEAQGWGEIERLSATLQRVRDCPDADAA 1030
            RV FCA+DLST+D PC+A  DS    + VA            L R +   G   + L   A  QG  +VA A G  S A            +V P   S  ++AV + AC  +G  A A    G A LLL E+    + +    AP D+              LR RL   LS+ +RF+LR LLN PP         + +GV+L +    GS+ + V   +     +++   R       + A S+ +++AL  L+      A   +  AEAF+++     +  A Q+                        A  H      V  A  A  FVL L+ + G  EAIA A GWG +E L++ L  V     A AA
Sbjct:  407 RVLFCAYDLSTIDPPCDARPDSAQHVEAVALLLMAVRRESMALCRAMGHGGSTSRELPMLALLQGLATVARAAGTGSAA--------TAGKAVLPLEQSGALKAVVEQACRDIGTAACARYAGGCATLLLAEISCLHMQVSAGGAPGDAQAQLSGPGVSSESFLRRRLLEILSSALRFHLRRLLNAPPQSPTAATDMERAGVALRAA--AGSSAAAVRSAVW----QLVRLARASDGAADESALSSVLTQALAMLWHAQRGAAQRSVAAAEAFLQQRGGGATAPAAQVRSTKAARPARVTKAGGGARSEYEAALVHLEHVSGVQGAAAASTFVLSLMDWPGAAEAIAVAGGWGPVETLASQLADVCGGETAGAA 766          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig133.2463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G8I9_ECTSI7.120e-6750.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LA33_9PHAE1.950e-4250.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV49_ECTSI4.130e-3634.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CH73_9STRA1.070e-1328.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig133contigF-serratus_M_contig133:507299..512436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons8
Model size2112
Cds size1131
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig133.2463.1prot_F-serratus_M_contig133.2463.1Fucus serratus malepolypeptideF-serratus_M_contig133 507420..511576 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929302.1933637-UTR-F-serratus_M_contig133:507298..5074191622929302.1933637-UTR-F-serratus_M_contig133:507298..507419Fucus serratus maleUTRF-serratus_M_contig133 507299..507419 +
1690962790.609139-UTR-F-serratus_M_contig133:507298..5074191690962790.609139-UTR-F-serratus_M_contig133:507298..507419Fucus serratus maleUTRF-serratus_M_contig133 507299..507419 +
1622929302.372777-UTR-F-serratus_M_contig133:511576..5124361622929302.372777-UTR-F-serratus_M_contig133:511576..512436Fucus serratus maleUTRF-serratus_M_contig133 511577..512436 +
1690962790.7035797-UTR-F-serratus_M_contig133:511576..5124361690962790.7035797-UTR-F-serratus_M_contig133:511576..512436Fucus serratus maleUTRF-serratus_M_contig133 511577..512436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929302.2137496-CDS-F-serratus_M_contig133:507419..5074561622929302.2137496-CDS-F-serratus_M_contig133:507419..507456Fucus serratus maleCDSF-serratus_M_contig133 507420..507456 +
1690962790.6187541-CDS-F-serratus_M_contig133:507419..5074561690962790.6187541-CDS-F-serratus_M_contig133:507419..507456Fucus serratus maleCDSF-serratus_M_contig133 507420..507456 +
1622929302.2310877-CDS-F-serratus_M_contig133:508610..5089181622929302.2310877-CDS-F-serratus_M_contig133:508610..508918Fucus serratus maleCDSF-serratus_M_contig133 508611..508918 +
1690962790.6280656-CDS-F-serratus_M_contig133:508610..5089181690962790.6280656-CDS-F-serratus_M_contig133:508610..508918Fucus serratus maleCDSF-serratus_M_contig133 508611..508918 +
1622929302.2507827-CDS-F-serratus_M_contig133:509333..5094861622929302.2507827-CDS-F-serratus_M_contig133:509333..509486Fucus serratus maleCDSF-serratus_M_contig133 509334..509486 +
1690962790.6392567-CDS-F-serratus_M_contig133:509333..5094861690962790.6392567-CDS-F-serratus_M_contig133:509333..509486Fucus serratus maleCDSF-serratus_M_contig133 509334..509486 +
1622929302.2704728-CDS-F-serratus_M_contig133:509719..5098331622929302.2704728-CDS-F-serratus_M_contig133:509719..509833Fucus serratus maleCDSF-serratus_M_contig133 509720..509833 +
1690962790.650077-CDS-F-serratus_M_contig133:509719..5098331690962790.650077-CDS-F-serratus_M_contig133:509719..509833Fucus serratus maleCDSF-serratus_M_contig133 509720..509833 +
1622929302.2915428-CDS-F-serratus_M_contig133:510074..5102251622929302.2915428-CDS-F-serratus_M_contig133:510074..510225Fucus serratus maleCDSF-serratus_M_contig133 510075..510225 +
1690962790.6596398-CDS-F-serratus_M_contig133:510074..5102251690962790.6596398-CDS-F-serratus_M_contig133:510074..510225Fucus serratus maleCDSF-serratus_M_contig133 510075..510225 +
1622929302.3129005-CDS-F-serratus_M_contig133:510479..5105941622929302.3129005-CDS-F-serratus_M_contig133:510479..510594Fucus serratus maleCDSF-serratus_M_contig133 510480..510594 +
1690962790.6697178-CDS-F-serratus_M_contig133:510479..5105941690962790.6697178-CDS-F-serratus_M_contig133:510479..510594Fucus serratus maleCDSF-serratus_M_contig133 510480..510594 +
1622929302.3330433-CDS-F-serratus_M_contig133:511087..5112681622929302.3330433-CDS-F-serratus_M_contig133:511087..511268Fucus serratus maleCDSF-serratus_M_contig133 511088..511268 +
1690962790.6776576-CDS-F-serratus_M_contig133:511087..5112681690962790.6776576-CDS-F-serratus_M_contig133:511087..511268Fucus serratus maleCDSF-serratus_M_contig133 511088..511268 +
1622929302.352921-CDS-F-serratus_M_contig133:511504..5115761622929302.352921-CDS-F-serratus_M_contig133:511504..511576Fucus serratus maleCDSF-serratus_M_contig133 511505..511576 +
1690962790.692101-CDS-F-serratus_M_contig133:511504..5115761690962790.692101-CDS-F-serratus_M_contig133:511504..511576Fucus serratus maleCDSF-serratus_M_contig133 511505..511576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig133.2463.1

>prot_F-serratus_M_contig133.2463.1 ID=prot_F-serratus_M_contig133.2463.1|Name=mRNA_F-serratus_M_contig133.2463.1|organism=Fucus serratus male|type=polypeptide|length=377bp
MPCEAIRDSEVPAKEVADCLTRVIDASGLLQKTLQKTAPRQGRGSVAAVG
QESFAMWRAFLRGVRTVSVAPAASSPLVEAVKTACVGMGGEASADTVRGA
AFLLLDELLPLERDEAPVDSPLRMRLAGFLSALIRFNLRVLLNPPPAKSS
GVSLYSTHRLGSNHSKVHEVIELTTDEIMTKKRDDYNPTRDGATSAAVSR
ALRRLYGYSDEKAWGVIEEAEAFVEEVEREDSLSAGQIVLRARQHSLETV
DVVAAIRARKFVLELLSFSGVEEAIAEAQGWGEIERLSATLQRVRDCPDA
DAALSLLADVQGLKGWLGTASPWRHVEQAKAVLTKLDRLMVACDKKEAKR
LSQEARRRMWFPRVKAASLPETADTS*
back to top

mRNA from alignment at F-serratus_M_contig133:507299..512436+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig133.2463.1 ID=mRNA_F-serratus_M_contig133.2463.1|Name=mRNA_F-serratus_M_contig133.2463.1|organism=Fucus serratus male|type=mRNA|length=5138bp|location=Sequence derived from alignment at F-serratus_M_contig133:507299..512436+ (Fucus serratus male)
AGGAGGGGGGGGGGACAAGTGCGCGAGAGCGGCTGGGCAGGGTCGGTCGA CAACGGCGGTTGGTGCGGGTGGGGCGAGGAAGAGAGTGAAGTTTTGTGCA TTCGACCTCTCCACCGTGGATATGCCGTGCGAAGCCATCCGAGATTCCGA GGTGCCAGGTAAGACGAGCCAAAGGTTTTGGAAACTTTGGGAGGTGGCGG TATTGAGGCGGGGCGGCGATGGTGCCTCGAGATTCGCGTTGCTCTTTCTC CCTGATGCGACAGAAACACCCTTGGCAGTGATGAAGGGGAGAAAATAGTT GTTTGTTGACTTGTTAACTGCTGATGGAACGGAACCGGAGCTGCTGTTGT TGTTGTTAGCACATTCAATGTGTTGTCCTTTCAGAACCAGTAGTATCATA GAAATACGGTGACGTATCATCTAAAGAGTACAGTAGAGTTACCTCGCAGC CGTTCATACCGCTTGTCACCTGAAAAAGAGGTCCGAGGATTCACGGGCTG AATGTATGGGTGCATGTCATGGTGTTAACTCGCTTGCACGAGTCACCAAA AGAAAATTCAGAAATTGCGGCAGATTATCGCGTGGAAGCGCCCGACTTCA GCTGCAAGCTTTCCCGTACATTTGGGGGGCGAACGGAAGCATATATGTTG TAACTTCCTGCTAGCCTCGGAACTAGAGAAGGAGATTGCAAAATGTTGTT CGGATTGGATTGGTTGTGTTGGTGGCCAACCCGAGAAACTACTTTGCACG GTGGCCACCCGCTCGTGGTCTGCTGAACAGGGAAAATAGAACAAAATATA AGTCTGTGTGTTAGATGTCTACCCTTGCGTTTTGCCCTCAGCGGTACGAG CCAAACATATCAATGACCTATCTCGTTTGTGGCAAAGAGTTACGAAAATA TTGTCAGAGAAAACCGCCTAACCACAGCCATAACCAGTATGGGGGGGTAA ACTGTCGCGTCTTCTGTCTGAAGATCTGCTCTTAGTTCAGAAAATGGTCC ACAGGCACAGAAAAGTCTCTGTCGGACTAGCGGTTTACAATCCGAAGAAC ACTGTTGTGTACTAAAATATGGGGTAGGAGGTTTGTGACAGGAGCCGTTC CAATAAACCCCGATGGAATAAATAGCGGGTACGTACGGGACTTTCCGTTG GATAGCCGCACTTTCCTCCAGTCGTTGCTGGCCTTGTCGGCGACCTTTTT CCGCATGGTCCGCTACTGCCTCCGTCGGAGATATGATATTAATAGTACCT CCGGTGTCGACGTGTGCCCCTGACGTCGGAAATTTCACGCACCGTGGTCC GTTGCGCTGCAGCCAAGGAAGTCGCGGACTGCCTGACGAGGGTGATCGAT GCCTCCGGACTCCTCCAGAAGACCCTGCAGAAGACCGCGCCCCGGCAAGG AAGGGGTTCGGTGGCGGCGGTTGGGCAAGAGAGCTTCGCGATGTGGAGGG CGTTCCTGCGCGGCGTGCGCACGGTTTCGGTCGCTCCCGCGGCGTCCTCT CCCTTGGTGGAGGCCGTCAAGACGGCGTGTGTTGGGATGGGTGGAGAGGC GTCGGCGGATACGGTTAGGGGTGCGGCGTTTCTACTGCTGGATGAGCTGC TGCCGCTGGAGAGGGACGAGGTGAGAGAAAAGGTGGAGGGAGGGGGGGGT ACGTGGTAAATGAAAGAATTTGATATCCAGAGACCAGCCGCGGGTTCGGT TGCGGTTCTGGGAGGGCGATCGTGCTCTCGGCGCGTAATTTCGCCGCGGT GCTATCAAATGTTTAGCTACTGAAATAGGCGCTGTTTGCGCCGGGTTTTT TTTGCTCTTCTCTGTCAAAGGCAGAGAAGTACCGATGTTGCTGCCAGACA GCGTATGGCACAGAACCGTTTGCCCCCCCCCCCGCCCCGACGAAACGTCG AATGGGGGTGCGACTTCGGAGCGGAGGCATACATACAGCCGTCGCATTTT ACTAACAAAACGTCTTTCCCAGCGATACTATAAACTGTTGGCCTTAGAGC ACCTCATGCCCTCTCCTCGTCTTCCTTTACCGCAGGCTCCCGTCGACTCT CCGCTGAGGATGAGGCTCGCCGGTTTCCTGTCCGCTTTGATTCGGTTCAA CCTAAGGGTCCTGCTCAACCCTCCGCCAGCGAAATCTTCCGGGGTCAGCC TGTACTCCACACATAGGCTCGGCTCGAACCACAGCAAGGTACTATTTAAT ATTCAACAAGGGTCGACGTTCACCAGAGCCTGCAAGAGTTCTGGCCTGCC TTGATGCTTATTCTGTAGCTCTGCGCTTGCACATGCTTGCGTTTTTCCCG GGTTCTTGCTTTTTTAGATGGGAAAATTATTACCTTCAATGATCGGTGCG TGCATTATTTTTTTTGGCGGCCGTGTTGTTGTCTGTCGTGATTTTCGGTC TCGACTCGCTGGCGCGGAAAGGTGCACGAGGTGATCGAGCTGACGACGGA CGAGATAATGACCAAAAAGAGGGATGATTACAATCCTACCCGGGACGGAG CCACGTCTGCCGCGGTCTCGAGGGCTCTTCGCAGGGTGAGAGAAAGGACA AGGTGCCTAGGAAAGTGATTAGTCTGTCCACGCACGAACTAAAAAGTGCG ACGAACGGCACAACATAAGGCCTCGTGAACTGTTGTAGGAAAGGAACCAG GCAACGTCGCCGAACAACCTGGGCGATTGCCAAGCGAGGTTCGAAGCTCG TAGCGGCAGTTCCTCGACATGGCGATCGATCCTGACTACCCCGTTTTTTT TTCTTGCGAACCTTTTCGTGTGCCAGCTGTACGGGTATTCGGACGAGAAA GCTTGGGGGGTGATAGAAGAGGCCGAGGCGTTTGTGGAGGAAGTGGAGAG GGAGGACAGCTTGTCCGCCGGCCAAATCGTCCTCCGTGCGCGCCAGCATT CCCTTGAGACGGTGGATGTTGTAGCCGGTGAGAGAATACACTTACGTGGA GGCGGACGAAAGATAATTGGTGAACTTCGGCGTCGCACGAGTGGTGGTTG TTGCCTTGTTGAGTAGATACACGCGACTTGGAGCTAGCGCCTCGACACGG GCGGTTGTGGTCAATGGCATCGAGGTTAGGGGCGCATCGCTTTTACTCCC TGATATTGGGTTTTTCATTGAAGGTGATCGGTAACGTCTCGTCGATTTAC CTCCTCCCCCATTGTTGCCCTTGTCGAGAAGCCATCCGCGCCAGAAAGTT CGTGCTTGAGCTGCTGAGCTTCTCGGGAGTCGAGGAAGCTATCGCGGAGG CACAGGGGTGGGGTGAAATAGAGCGGCTGTCGGCGACGCTCCAAAGGTAA GTAAGGTCGCCCGTTCGCCGAGAAAACTTTTTTTCTGTAAGGTCTCCCGG TGCTAGAGCCTGGGGCTCAACCGTCGTGCCAAAACCAGTAGTCAGCCGTC AGCAAACCAGTAGCAGCCAGGCAAAACAGCCTTCGATATTTTCAAACCGT TTCCAATCTGATCCCCTCCCCCCCTCCAGAAGTTATGTTCCTAAACGTTT TTTTTTTTTGTTTTTCCAACCCTTGCTCCTGTCACCTCCCTCATATTCAG ATAGAAAAGTCTTGTTATTTTTTTGCCGCGTGTCGCGCCCGCGTCAACTC CCGACAGAGTCGCGCACGGCGCAAGCATCGAGGCAATCCGGAGATTGAAA TTGAGCATGTCTGAGGTCGCCGCTCGTAGAGCTCGAACCTTTTCCACCCT TGAGAGCAAAGAAGCGCTGCCGTTCTACCATAATGCTTACAGCACTCTGC AGTTAACAAAACACTCCTTTGGCGTGTTTGCTTTCACAGGGTGAGGGATT GTCCGGACGCCGACGCGGCGCTCAGTCTTCTCGCCGACGTGCAAGGTCTC AAGGGTTGGCTGGGAACAGCTTCGCCGTGGCGCCACGTCGAACAAGCCAA GGCAGTGCTGACGAAGCTCGACAGGCTTATGGTCGCGTGTGACAAAAAAG AGGCCAAGCGCCTGTCTCAGGTGGGCGGGTAAAAAATGTAAAGTTTTGGA AAAAGAAAGGAAAACATTATAGAGTGAAACCTCGCCTGGTCTGAACCGTG TTGTAAAGGAGCGGAGAAGAAGCGATGAAATTTTCGGGGCCTTGTGCCTG AACGTAACGGTATACAGCTCGCCGCGTGGTATCAAATCGACGGGAAGCCT TACATCGGAGGATCGACCCCAAGGAACGCTTCCGAACCCCTATCGCGATA TCTCAGGAAGCTAGGCGACGCATGTGGTTCCCCCGAGTGAAGGCCGCCTC GCTACCGGAGACCGCCGATACGTCATAAGCAATGGAAACTACACTATGTG GCACCCAAAGACTCGACAGGGTGAATCATCTCCCCGCCCATTTTCTCCCC TTCCACCCCCCCAATATATATATATACACACATGCGTTCTTGTTTGGTTC TTGTGGAAGTGAGTCGTCTGCGAGAGAAACGCTTCGTTCGTCTCTCGGTC CATGTTGGTAGATCTTGAAGGTCAAGATAGATGCCCATGGACGTGACTGG TATCAGTACTTGGAGGTCCGTCAGCTGTCCATGAGACACATGTGTGTGTG TCTTTTTTTTTCAAGAGCTGGCCGATACTTTCCGGGTAAAGGTAAACGTT GTGATAAAGGTTCACGAATGGATTTGCCGGTTTGCCTTCTAGTCTCCAGA TGAGAACGCCTGTTATATCGTGGAAACCCGTGTTTCGTTTTCAGTCTTTG CTCGCAATTAAAGCGGCTCGTGGCTTGTATGCGGGGACTGCATTCGTATC TTGATATGTCTCAATACGGGGGGGTGTTGGTTGTAATGTACAATTTGGAC AAAACAGTAGCTGCTTTTCGTGTGATCTACTCAATTTGTGCTGGCTAAGT TCTCCCGGGTTTGGCGTGGGGAAAAAGTATACTATTAATGCACTTTTTCT GTCGTGGAGACGTAGTTCCATATGCCTTCGCGGCGTGACTCGTATTCTCC TGGGTACGTTTTGAGGGGTGGGAACTATTTGTCTATTAAAGGCGATGGAT CGAAGGCTCCGCGGCGTGCGCTCGTTCGGTTTGCTCAGTGCGCTCGGTGA AAGTCGCAGGGACCCGCGGTTGCCCCATTATGCGCACTCCCATCGAATGG ATTATGCGCATTCCCATCATTCAATGATATTATATCGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig133:507299..512436+

>mRNA_F-serratus_M_contig133.2463.1 ID=mRNA_F-serratus_M_contig133.2463.1|Name=mRNA_F-serratus_M_contig133.2463.1|organism=Fucus serratus male|type=CDS|length=2262bp|location=Sequence derived from alignment at F-serratus_M_contig133:507299..512436+ (Fucus serratus male)
ATGCCGTGCGAAGCCATCCGAGATTCCGAGGTGCCAGATGCCGTGCGAAG
CCATCCGAGATTCCGAGGTGCCAGCCAAGGAAGTCGCGGACTGCCTGACG
AGGGTGATCGATGCCTCCGGACTCCTCCAGAAGACCCTGCAGAAGACCGC
GCCCCGGCAAGGAAGGGGTTCGGTGGCGGCGGTTGGGCAAGAGAGCTTCG
CGATGTGGAGGGCGTTCCTGCGCGGCGTGCGCACGGTTTCGGTCGCTCCC
GCGGCGTCCTCTCCCTTGGTGGAGGCCGTCAAGACGGCGTGTGTTGGGAT
GGGTGGAGAGGCGTCGGCGGATACGGTTAGGGGTGCGGCGTTTCTACTGC
TGGATGAGCTGCTGCCGCTGGAGAGGGACGAGCCAAGGAAGTCGCGGACT
GCCTGACGAGGGTGATCGATGCCTCCGGACTCCTCCAGAAGACCCTGCAG
AAGACCGCGCCCCGGCAAGGAAGGGGTTCGGTGGCGGCGGTTGGGCAAGA
GAGCTTCGCGATGTGGAGGGCGTTCCTGCGCGGCGTGCGCACGGTTTCGG
TCGCTCCCGCGGCGTCCTCTCCCTTGGTGGAGGCCGTCAAGACGGCGTGT
GTTGGGATGGGTGGAGAGGCGTCGGCGGATACGGTTAGGGGTGCGGCGTT
TCTACTGCTGGATGAGCTGCTGCCGCTGGAGAGGGACGAGGCTCCCGTCG
ACTCTCCGCTGAGGATGAGGCTCGCCGGTTTCCTGTCCGCTTTGATTCGG
TTCAACCTAAGGGTCCTGCTCAACCCTCCGCCAGCGAAATCTTCCGGGGT
CAGCCTGTACTCCACACATAGGCTCGGCTCGAACCACAGCAAGGCTCCCG
TCGACTCTCCGCTGAGGATGAGGCTCGCCGGTTTCCTGTCCGCTTTGATT
CGGTTCAACCTAAGGGTCCTGCTCAACCCTCCGCCAGCGAAATCTTCCGG
GGTCAGCCTGTACTCCACACATAGGCTCGGCTCGAACCACAGCAAGGTGC
ACGAGGTGATCGAGCTGACGACGGACGAGATAATGACCAAAAAGAGGGAT
GATTACAATCCTACCCGGGACGGAGCCACGTCTGCCGCGGTCTCGAGGGC
TCTTCGCAGGGTGCACGAGGTGATCGAGCTGACGACGGACGAGATAATGA
CCAAAAAGAGGGATGATTACAATCCTACCCGGGACGGAGCCACGTCTGCC
GCGGTCTCGAGGGCTCTTCGCAGGCTGTACGGGTATTCGGACGAGAAAGC
TTGGGGGGTGATAGAAGAGGCCGAGGCGTTTGTGGAGGAAGTGGAGAGGG
AGGACAGCTTGTCCGCCGGCCAAATCGTCCTCCGTGCGCGCCAGCATTCC
CTTGAGACGGTGGATGTTGTAGCCGCTGTACGGGTATTCGGACGAGAAAG
CTTGGGGGGTGATAGAAGAGGCCGAGGCGTTTGTGGAGGAAGTGGAGAGG
GAGGACAGCTTGTCCGCCGGCCAAATCGTCCTCCGTGCGCGCCAGCATTC
CCTTGAGACGGTGGATGTTGTAGCCGCCATCCGCGCCAGAAAGTTCGTGC
TTGAGCTGCTGAGCTTCTCGGGAGTCGAGGAAGCTATCGCGGAGGCACAG
GGGTGGGGTGAAATAGAGCGGCTGTCGGCGACGCTCCAAAGCCATCCGCG
CCAGAAAGTTCGTGCTTGAGCTGCTGAGCTTCTCGGGAGTCGAGGAAGCT
ATCGCGGAGGCACAGGGGTGGGGTGAAATAGAGCGGCTGTCGGCGACGCT
CCAAAGGGTGAGGGATTGTCCGGACGCCGACGCGGCGCTCAGTCTTCTCG
CCGACGTGCAAGGTCTCAAGGGTTGGCTGGGAACAGCTTCGCCGTGGCGC
CACGTCGAACAAGCCAAGGCAGTGCTGACGAAGCTCGACAGGCTTATGGT
CGCGTGTGACAAAAAAGAGGCCAAGCGCCTGTCTCAGGGTGAGGGATTGT
CCGGACGCCGACGCGGCGCTCAGTCTTCTCGCCGACGTGCAAGGTCTCAA
GGGTTGGCTGGGAACAGCTTCGCCGTGGCGCCACGTCGAACAAGCCAAGG
CAGTGCTGACGAAGCTCGACAGGCTTATGGTCGCGTGTGACAAAAAAGAG
GCCAAGCGCCTGTCTCAGGAAGCTAGGCGACGCATGTGGTTCCCCCGAGT
GAAGGCCGCCTCGCTACCGGAGACCGCCGATACGTCATAAGAAGCTAGGC
GACGCATGTGGTTCCCCCGAGTGAAGGCCGCCTCGCTACCGGAGACCGCC
GATACGTCATAA
back to top