mRNA_F-serratus_M_contig133.2453.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig133.2453.1 vs. uniprot
Match: A0A6H5KTJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ7_9PHAE) HSP 1 Score: 394 bits (1012), Expect = 1.440e-114 Identity = 350/850 (41.18%), Postives = 460/850 (54.12%), Query Frame = 2
Query: 1244 AQVDADTSIGGPHVIQERLIN----ATKRMNIRLEEHRNKDK-RITFDSNLISSLILTQNNIIKEEL-RTLGINVSSLSPLLNIDHELKKRAEAAYMSVKERVDRAKRGIA---AANGKSAPP--------------------TSNGAVGSRIAKKEIKADASAPALAPAPLIPSIASAAAKANPTLMPAAVATPAQA--NHFQPQNHRAAQQQPEMPTLKATAQPVPLIQQAVAPPPVR--------PPLAPGPAPGSVSVLHAAPPXXXXXXXXXXAYTVXXXXXXXXXXXXXXXXXXR-----------AVEAPAPAHAXXXXXXXXXXXXXXXXXXXXXXXXAPEFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASTIFRPVPAPPQSYDGPRVRPNEDNR-GLKRLPSDNLETVKREAESVPGHDTLSAEERLLQNAPA-LAAAEEETSKPWFVTHVVTHRHAWCCLRDAAERDGMRQVLKERPWANPEDHSEGANQAVGSDVLEIMSVSTQYYLKNILRSLALIARQRKGGLSADLLAGIEFRLENFTDDTNSSQQELCRGMVPRLPPVSDMPRVLLKKEEQSHRNECQTREERWEAELKDKLKAAEELRKRLIRRGQRKLPTGGYKWWEDMEATSKSGWLSKEQLATSEFARRVAVKHGIGVVASLLKRKE-------------DQVRFSLSFDMLFEANKDQSHRGGGAMGGASSDPQLEAMAVGASSQFLDVSMEDLEAATSSLGVQPLDPYHNESPIDTVRNIRRRLTLKPAADTRGPQEMNGGAEALEKGTGE--GKVEINNVDLADLLRTMKPKGDRHGWARILYRAQNGLRRGHA 3592
A +A + GG +V +R+++ A KRMN+RL E R+ + +I +++ ++S LI TQN II +EL + LG+N++SL+P L+++ ELKKR++ AY++VK +VDRAKR A A SA P ++ PA P + PT++ +A PA A +H Q H A QQQ A P P+ V PP PL G +P S V AAPPXXXXXXXXXX XXXXXXXXXXXXXXXXXX A + P + XXXXXXXXXXXX AP A +Y P+V + D R GL++LP+D L++ K++ E + D ++ EE L++ P+ L E+ + WF+T+VV HRHAWCCLRDA E+ GMR+VLKERPW NP + EG +A GSDVL++MS + QYYLKNIL LA++A QRKGGLSA+LL+G+E RL + + EL + +VPRLP V ++PRV+L+K E++HR EC+ REERW+ EL D L AEE+RKRLIRRG +KLP G +KWWEDME +KSGWLSKEQLA SEFARRVAVKHGIGVVA+L+K+KE + D S R A+ G SS G SS+ + A + L +PLDP ++ ++TVRNIRRRL L A D + G E + E +EINN DLA+LLR+ KP+GD WAR+L RAQN + HA
Sbjct: 26 AAANAKANPGGVNVAPQRVVDHLKAAVKRMNVRLIELRSGNSTKIEYNTTIMSKLINTQNKIITDELEQKLGMNLTSLAPHLDLEGELKKRSDTAYLAVKNKVDRAKRSEAHKAAIKAASANPGXXXXXXXXXXXXXXXXXXXXXXXXXXPQVVAMPXXXXXXXPAAVPVKM--------EDVKPTVVTKPMAAPAAATSHHVVQQAHLAPQQQ-------AVVAPQPVAPAQVKLPPTSVAVAGTASAPLVIGASPDSTPVAAAAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVAQHSQTPVYGGQAPGAAXXXXXXXXXXXXRAAPQAPT---------------------------AHAPAXXXXXXXXXXXPAYTKPKVYNDVDPRTGLQKLPTDKLDSAKKQVEHINSSDVVAEEETRLRSTPSPLVPPEKPPASTWFLTNVVDHRHAWCCLRDAGEKAGMRRVLKERPWGNPREPLEGGKEAAGSDVLKLMSFAAQYYLKNILDELAVVAYQRKGGLSAELLSGVESRLRD--PSVKDPKAELRQSLVPRLPSVRNLPRVILEKTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGVVAALMKKKELASXXXXXXXXXXXXXXXXXXXXXXXDDPMDVSDR---AITGDSSSG-------GRSSKDSKGKAGNKRAPGTGLK-RPLDPLASDDAVETVRNIRRRLVLG-APDHGDDDDDIGSGEGSTPPSEEQEASLEINNADLAELLRSTKPRGDPRKWARVLLRAQNSRKGVHA 819
BLAST of mRNA_F-serratus_M_contig133.2453.1 vs. uniprot
Match: D8LCB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB6_ECTSI) HSP 1 Score: 367 bits (941), Expect = 3.200e-107 Identity = 211/455 (46.37%), Postives = 278/455 (61.10%), Query Frame = 2
Query: 2273 SYDGPRVRPNEDNR-GLKRLPSDNLETVKREAESVPGHDTLSAEERLLQNAPA-LAAAEEETSKPWFVTHVVTHRHAWCCLRDAAERDGMRQVLKERPWANPEDHSEGANQAVGSDVLEIMSVSTQYYLKNILRSLALIARQRKGGLSADLLAGIEFRLENFTDDTNSSQQELCRGMVPRLPPVSDMPRVLLKKEEQSHRNECQTREERWEAELKDKLKAAEELRKRLIRRGQRKLPTGGYKWWEDMEATSKSGWLSKEQLATSEFARRVAVKHGIGVVASLLKRKEDQVRFSLSFDMLFEANKDQSHRGGGAMGGASSDPQLEAMAVGASSQFLDVSMEDLEAA----TSSLGVQ-PLDPYHNESPIDTVRNIRRRLTLKPAADTRGPQEMNGGAEALEKGTG--------EGKVEINNVDLADLLRTMKPKGDRHGWARILYRAQNGLRRGHA 3592
+Y P+V + D R GL++LP+D L++ K++ E + D ++ EE L++ P+ L E+ + WF+T+VV HRHAWCCLRDA ER GMR+VLKERPW NP + EG +A GSDVL++MS++ QYYLKN+L LA++A QRKGGLSA+LL+G+E RL + + EL + +VPRLP V D+PRV L++ E++HR EC+ REERW+ EL D L AEE+RKRLIRRG +KLP G +KWWEDME +KSGWLSKEQLA SEFARRVAVKHGIGVVA+L+ + G SS S + A T G++ PLDP ++ ++TVRNIRRRL L D + +G G E +EINN DLA+LLR+ KP+GD WAR+L+RAQN + HA
Sbjct: 176 AYTKPKVYNDVDPRTGLQKLPTDKLDSAKKQVEHINSSDVVAEEETRLRSTPSPLVPPEKPPASTWFLTNVVDHRHAWCCLRDAGERAGMRRVLKERPWGNPREPLEGGKEAAGSDVLKLMSLAAQYYLKNMLDELAVVAYQRKGGLSAELLSGVESRLRD--PSVKDPKAELRQSLVPRLPRVQDLPRVTLERTEEAHRKECEEREERWDVELADTLTTAEEVRKRLIRRGTKKLPPGSFKWWEDMETRAKSGWLSKEQLAGSEFARRVAVKHGIGVVAALMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADDPMDVSDRPTTGDSSSXXXXSKDSNGKAGNKRTPGAGLKRPLDPLASDDAVETVRNIRRRLVLGAPDDG----DXXXXXXXXXRGVGATPPSEEQEAGLEINNADLAELLRSTKPRGDPRKWARVLFRAQNSRKGVHA 624
BLAST of mRNA_F-serratus_M_contig133.2453.1 vs. uniprot
Match: A0A6H5K4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4T0_9PHAE) HSP 1 Score: 142 bits (358), Expect = 1.250e-30 Identity = 111/328 (33.84%), Postives = 148/328 (45.12%), Query Frame = 2
Query: 2297 PNEDNRGLKRLPSDNLETVKREAESVPGHDTLSAEERLLQNA--------------------------------------PALAAAEEETSKPWFVTHVVTHRHAWCCLRDAAERDGMRQVLKERPWANPEDHSEGANQAVGSDVLEIMSVSTQYYLKNILRSLALIARQRKGGLSADLLAGIEFRLENFTDDTNSSQQELCRGMVPRL---------------------PPVSDMPRVLLKKEEQSHRNECQTREERWEAELKDKLKAAEELRK-RLIRRGQRKLPTGGYKWWEDMEATSKSGWLSKEQLATSEFARRVAVKHGIGV 3100
P ED +GL +LP D L+ V +A+ V EER + + A AAA +PWF +VV HR AWC LRDA R GMR+VL+ RPW + S G +A S VLE YLK +L L+++A QR+GGLS +LL G+E R+E+ + S L G+VPR E++HR C RE WEA + + + AA RK R RR P+ E + A S+SGWLS+EQ+A +EFARRV VK G+G+
Sbjct: 241 PEEDRKGLLKLPWDGLDVVSEQAKLVTDARVQLIEERRFRPSFVPPLSPRDYQYSSGTGGDSTEEPGSPQGHDDSEEAQEDAEAAARWREKQPWFARNVVDHRSAWCGLRDAGARAGMRKVLQPRPWGDALAPSGGGQEAANSQVLEA-------YLKRVLTELSVVAYQRRGGLSEELLQGLEERMED--PRSPGSALILYEGLVPRFRRYQPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAHRRSCLKREAGWEARVAEVMAAAHGGRKSRNKRRSLTNAPSRRV-GVESLSAWSESGWLSREQVAANEFARRVGVKRGVGL 558
BLAST of mRNA_F-serratus_M_contig133.2453.1 vs. uniprot
Match: D7FYX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYX3_ECTSI) HSP 1 Score: 137 bits (346), Expect = 3.550e-29 Identity = 101/327 (30.89%), Postives = 142/327 (43.43%), Query Frame = 2
Query: 2297 PNEDNRGLKRLPSDNLETVKREAESVPGHDTLSAEERLLQNA--------------------------------------PALAAAEEETSKPWFVTHVVTHRHAWCCLRDAAERDGMRQVLKERPWANPEDHSEGANQAVGSDVLEIMSVSTQYYLKNILRSLALIARQRKGGLSADLLAGIEFRLENFTDDTNSSQQELCRGMVPRLPPVS---------------------DMPRVLLKKEEQSHRNECQTREERWEAELKDKLKAAEELRKRLIRRGQRKLPTGGYKWWEDMEATSKSGWLSKEQLATSEFARRVAVKHGIGV 3100
P ED GL +LP D L+ V + + V EER L+ + A AAA +PWF +VV HR AWC LR+A R G+R+VL+ RPW +P S G +A S VLE++S +TQ YLK +L L+++A QR+GGLS +LL G+E R+E+ + S L G+VPR P + PR +L++EE +HR C RE WEA + + + AA + +A +EFARRV K G+G+
Sbjct: 276 PEEDRNGLLKLPWDGLDAVSEQVKLVTDARVQLIEERRLRPSYVPPLSPRDYQYSSGTGGDSTEEPGSPQGHDDSEEAEEDAEAAARRREKQPWFARNVVDHRSAWCGLRNAGARAGLRKVLQPRPWGDPLAPSGGGQEAANSQVLELISAATQAYLKRVLTELSVVAYQRRGGLSEELLQGLEERMED--PRSPGSALVLYEGLVPRFPRYESGGSXXXXXXXXXXXXXXXXXEDPREVLRREEGAHRRSCLEREAGWEARVAEVMAAA-------------------------------------DGVAANEFARRVGFKRGVGL 563 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig133.2453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig133.2453.1 >prot_F-serratus_M_contig133.2453.1 ID=prot_F-serratus_M_contig133.2453.1|Name=mRNA_F-serratus_M_contig133.2453.1|organism=Fucus serratus male|type=polypeptide|length=1190bp MSRNAPLSVPDDDDDDSLPEHLTNVLLREDSRLGILLRPPNPVTLAPGTLback to top mRNA from alignment at F-serratus_M_contig133:356079..372454- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig133.2453.1 ID=mRNA_F-serratus_M_contig133.2453.1|Name=mRNA_F-serratus_M_contig133.2453.1|organism=Fucus serratus male|type=mRNA|length=16376bp|location=Sequence derived from alignment at F-serratus_M_contig133:356079..372454- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig133:356079..372454- >mRNA_F-serratus_M_contig133.2453.1 ID=mRNA_F-serratus_M_contig133.2453.1|Name=mRNA_F-serratus_M_contig133.2453.1|organism=Fucus serratus male|type=CDS|length=7140bp|location=Sequence derived from alignment at F-serratus_M_contig133:356079..372454- (Fucus serratus male)back to top |