mRNA_F-serratus_M_contig133.2455.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig133.2455.1
Unique NamemRNA_F-serratus_M_contig133.2455.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig133.2455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig133contigF-serratus_M_contig133:375909..376371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size465
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929298.392846-CDS-F-serratus_M_contig133:375908..3762351622929298.392846-CDS-F-serratus_M_contig133:375908..376235Fucus serratus maleCDSF-serratus_M_contig133 375909..376235 +
1690962788.7536426-CDS-F-serratus_M_contig133:375908..3762351690962788.7536426-CDS-F-serratus_M_contig133:375908..376235Fucus serratus maleCDSF-serratus_M_contig133 375909..376235 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929298.4088485-UTR-F-serratus_M_contig133:376235..3763711622929298.4088485-UTR-F-serratus_M_contig133:376235..376371Fucus serratus maleUTRF-serratus_M_contig133 376236..376371 +
1690962788.7626727-UTR-F-serratus_M_contig133:376235..3763711690962788.7626727-UTR-F-serratus_M_contig133:376235..376371Fucus serratus maleUTRF-serratus_M_contig133 376236..376371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig133.2455.1prot_F-serratus_M_contig133.2455.1Fucus serratus malepolypeptideF-serratus_M_contig133 375909..376235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig133.2455.1

>prot_F-serratus_M_contig133.2455.1 ID=prot_F-serratus_M_contig133.2455.1|Name=mRNA_F-serratus_M_contig133.2455.1|organism=Fucus serratus male|type=polypeptide|length=109bp
KFDLTVDEGKKRPNPSREKNKGVRRRRKVGKKYPVSPSSCVTPAGAGTSN
KPDVQNKWKENTENGRYWYSYCTTDIRKEKSGQGDAQSTNQDTNSYYSQY
STAVHVGV*
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mRNA from alignment at F-serratus_M_contig133:375909..376371+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig133.2455.1 ID=mRNA_F-serratus_M_contig133.2455.1|Name=mRNA_F-serratus_M_contig133.2455.1|organism=Fucus serratus male|type=mRNA|length=463bp|location=Sequence derived from alignment at F-serratus_M_contig133:375909..376371+ (Fucus serratus male)
AAATTCGACCTCACGGTCGACGAGGGAAAGAAACGGCCGAATCCTTCTCG
CGAGAAAAATAAAGGTGTGCGCCGCAGAAGGAAGGTGGGTAAGAAATATC
CGGTGTCACCTTCCTCCTGTGTGACCCCGGCTGGTGCTGGTACATCCAAC
AAACCTGACGTCCAGAATAAATGGAAAGAAAACACAGAAAACGGAAGGTA
CTGGTACTCGTACTGTACTACAGATATCAGAAAGGAAAAAAGTGGACAGG
GAGACGCGCAGAGTACCAATCAAGATACAAACTCGTACTACAGCCAGTAC
AGTACAGCTGTACACGTTGGCGTGTAGGCCGAATGGGTGTGTAGTTTGCT
GTTTTCGTTCATCTCGCATCGAGTGATCCACTACGAATCGAGCCGTGATT
ACGAGATAGAGGGAACCAAATCGGGAACATGGTCGGAAAAAAAAACAGGG
AAAGTTAATGGAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig133:375909..376371+

>mRNA_F-serratus_M_contig133.2455.1 ID=mRNA_F-serratus_M_contig133.2455.1|Name=mRNA_F-serratus_M_contig133.2455.1|organism=Fucus serratus male|type=CDS|length=654bp|location=Sequence derived from alignment at F-serratus_M_contig133:375909..376371+ (Fucus serratus male)
AAATTCGACCTCACGGTCGACGAGGGAAAGAAACGGCCGAATCCTTCTCG
CGAGAAAAATAAAGGTGTGCGCCGCAGAAGGAAGGTGGGTAAGAAATATC
CGGTGTCACCTTCCTCCTGTGTGACCCCGGCTGGTGCTGGTACATCCAAC
AAACCTGACGTCCAGAATAAATGGAAAGAAAACACAGAAAACGGAAGGTA
CTGGTACTCGTACTGTACTACAGATATCAGAAAGGAAAAAAGTGGACAGG
GAGACGCGCAGAGTACCAATCAAGATACAAACTCGTACTACAGCCAGTAC
AGTACAGCTGTACACGTTGGCGTGTAGAAATTCGACCTCACGGTCGACGA
GGGAAAGAAACGGCCGAATCCTTCTCGCGAGAAAAATAAAGGTGTGCGCC
GCAGAAGGAAGGTGGGTAAGAAATATCCGGTGTCACCTTCCTCCTGTGTG
ACCCCGGCTGGTGCTGGTACATCCAACAAACCTGACGTCCAGAATAAATG
GAAAGAAAACACAGAAAACGGAAGGTACTGGTACTCGTACTGTACTACAG
ATATCAGAAAGGAAAAAAGTGGACAGGGAGACGCGCAGAGTACCAATCAA
GATACAAACTCGTACTACAGCCAGTACAGTACAGCTGTACACGTTGGCGT
GTAG
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