mRNA_F-serratus_M_contig1328.2433.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1328.2433.1 vs. uniprot
Match: B3VMZ8_FUCSE (Heat shock protein 20 n=2 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ8_FUCSE) HSP 1 Score: 225 bits (574), Expect = 1.350e-68 Identity = 117/134 (87.31%), Postives = 120/134 (89.55%), Query Frame = 3
Query: 285 PQYGP*RGLGMNLDFHETNNGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRKYHFVERSYGKTTRTVRLPDTADTSKARAAYVNGVLKLNFPKREPLSARRRQIHIGDGE*AAPSGN 686
P G GLGMNLDFHETN GYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRKYHF+ERSYGKTTR+VRLPDTA TSKA A YVNGVLK+NFPKREP SARR QI IGDGE AAPS N
Sbjct: 54 PSMGVEGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRKYHFLERSYGKTTRSVRLPDTAATSKASAEYVNGVLKINFPKREPPSARRLQIPIGDGEGAAPSEN 187
BLAST of mRNA_F-serratus_M_contig1328.2433.1 vs. uniprot
Match: D7FUU6_ECTSI (Small heat shock protein heat shock protein 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU6_ECTSI) HSP 1 Score: 154 bits (390), Expect = 4.760e-41 Identity = 75/120 (62.50%), Postives = 95/120 (79.17%), Query Frame = 3
Query: 303 RGLGMNLDFHETNNGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRKYHFVERSYGKTTRTVRLPDTADTSKARAAYVNGVLKLNFPKREPLSARRRQIHIGDG 662
R LGM+LDFHET +G+EL ADLPGMKKED+ +D+D ESGVLTV+GERK E+EEK +G + RKYHFVERSYGKT+R+VRLP+ ADT+ A A +GVL + FPK+E + R +I +G G
Sbjct: 61 RSLGMSLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSEKEEKGDGKDGDRKYHFVERSYGKTSRSVRLPEAADTATANADLTDGVLTITFPKKEAPVSSRFRIPLGGG 180
BLAST of mRNA_F-serratus_M_contig1328.2433.1 vs. uniprot
Match: A0A6H5KKF0_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF0_9PHAE) HSP 1 Score: 146 bits (369), Expect = 2.270e-38 Identity = 71/118 (60.17%), Postives = 93/118 (78.81%), Query Frame = 3
Query: 303 RGLGMNLDFHETNNGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRKYHFVERSYGKTTRTVRLPDTADTSKARAAYVNGVLKLNFPKREPLSARRRQIHIG 656
R L MNLDFHET +G+EL ADLPGMK+ED+ +D+D ESGVLTV+GERK +REEK + + RKYHFVERSYGKT+R+VRLP+ A+T+ A A +GVL + FPK+E ++ R +I +G
Sbjct: 31 RSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSKREEKRDDKDGDRKYHFVERSYGKTSRSVRLPEAANTANANADLTDGVLTITFPKKEAPASSRFRIPLG 148
BLAST of mRNA_F-serratus_M_contig1328.2433.1 vs. uniprot
Match: A0A6H5JFM4_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM4_9PHAE) HSP 1 Score: 148 bits (373), Expect = 3.170e-38 Identity = 72/118 (61.02%), Postives = 93/118 (78.81%), Query Frame = 3
Query: 303 RGLGMNLDFHETNNGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRKYHFVERSYGKTTRTVRLPDTADTSKARAAYVNGVLKLNFPKREPLSARRRQIHIG 656
R L MNLDFHET +G+EL ADLPGMK+ED+ +D+D ESGVLTV+GERK EREEK + + RKYHFVERSYGKT+R+VRLP+ A+T+ A A +GVL + FPK+E ++ R +I +G
Sbjct: 86 RSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSEREEKRDDKDGDRKYHFVERSYGKTSRSVRLPEAANTANANADLTDGVLTITFPKKEAPASSRFRIPLG 203
BLAST of mRNA_F-serratus_M_contig1328.2433.1 vs. uniprot
Match: A0A3C1Z549_9BACT (Heat-shock protein Hsp20 n=2 Tax=Nitrospira TaxID=1234 RepID=A0A3C1Z549_9BACT) HSP 1 Score: 100 bits (248), Expect = 2.180e-21 Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 3
Query: 321 LDFHETNNGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRKYHFVERSYGKTTRTVRLPDTADTSKARAAYVNGVLKLNFPKREPLSARRRQIHI 653
+D ET Y + A+LP +K+ED+KV + E GVLT+ GERKQE+EEK +KYH VERSYG+ RT LPDT D SK +A Y +G+L L+ PK E A+ +QI +
Sbjct: 48 VDISETEAEYAIKAELPEVKREDVKVTV--EDGVLTIQGERKQEKEEKG------KKYHRVERSYGRFVRTFTLPDTVDESKVKAEYADGILHLHLPKSE--KAKPKQIEV 148
BLAST of mRNA_F-serratus_M_contig1328.2433.1 vs. uniprot
Match: D8PFX6_9BACT (Heat shock protein, Hsp20 family n=5 Tax=Nitrospira TaxID=1234 RepID=D8PFX6_9BACT) HSP 1 Score: 97.1 bits (240), Expect = 2.830e-20 Identity = 59/142 (41.55%), Postives = 83/142 (58.45%), Query Frame = 3
Query: 258 KLRRLGLCRPQYGP*RGLGMNL----------DFHETNNGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRKYHFVERSYGKTTRTVRLPDTADTSKARAAYVNGVLKLNFPKREPLSARRRQIHI 653
+L R+ + RP G G G + D ET + Y + A+LP +KKED+KV + E VLT+ GERKQE+E+K +KYH +ERSYG+ R+ LPD+ D SK RA Y +G+L L+ PK E A+ +QI +
Sbjct: 18 RLNRM-IARPSTGTPAGQGKEVMTVADWTPTVDISETESEYAIKAELPEVKKEDVKVTV--EDAVLTIQGERKQEKEDKG------KKYHRIERSYGRFVRSFTLPDSVDESKVRAEYADGILHLHLPKSE--KAKPKQIDV 148
BLAST of mRNA_F-serratus_M_contig1328.2433.1 vs. uniprot
Match: A0A1F9FSV3_9DELT (SHSP domain-containing protein n=1 Tax=Deltaproteobacteria bacterium RBG_16_71_12 TaxID=1797848 RepID=A0A1F9FSV3_9DELT) HSP 1 Score: 96.7 bits (239), Expect = 3.500e-20 Identity = 56/112 (50.00%), Postives = 70/112 (62.50%), Query Frame = 3
Query: 321 LDFHETNNGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRKYHFVERSYGKTTRTVRLPDTADTSKARAAYVNGVLKLNFPKREPLSARRRQIHIG 656
+D ET Y L A+LP MKKEDIK+ + E GVLT+TGERK EREEK+ + YH VERSYG+ R+ LP D +K A+Y NGVL + PK P R ++I IG
Sbjct: 44 VDIAETPEAYTLHAELPAMKKEDIKLAV--EDGVLTLTGERKLEREEKN------KTYHRVERSYGRFQRSFTLPAAVDEAKVTASYDNGVLNVLIPKAAPPPPRSKEIKIG 147
BLAST of mRNA_F-serratus_M_contig1328.2433.1 vs. uniprot
Match: A0A7Y8HTY7_9BACT (Hsp20/alpha crystallin family protein n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7Y8HTY7_9BACT) HSP 1 Score: 95.9 bits (237), Expect = 7.000e-20 Identity = 48/113 (42.48%), Postives = 71/113 (62.83%), Query Frame = 3
Query: 318 NLDFHETNNGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRKYHFVERSYGKTTRTVRLPDTADTSKARAAYVNGVLKLNFPKREPLSARRRQIHIG 656
++D ET+ Y + A++P +KKED+KV + E GVLT+ GERKQE+EEK ++YH VERSYG+ R+ LPD D K +A + +G+L L PK E + ++ +G
Sbjct: 45 SVDVSETDGAYHIKAEIPDVKKEDVKVTL--EDGVLTIQGERKQEKEEKG------KRYHRVERSYGRFVRSFTLPDVVDEGKVKAEFKDGILNLELPKSEKAKPKAIEVKVG 149
BLAST of mRNA_F-serratus_M_contig1328.2433.1 vs. uniprot
Match: A0A532ENZ7_9BACT (Hsp20/alpha crystallin family protein n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A532ENZ7_9BACT) HSP 1 Score: 95.5 bits (236), Expect = 9.640e-20 Identity = 50/113 (44.25%), Postives = 70/113 (61.95%), Query Frame = 3
Query: 318 NLDFHETNNGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRKYHFVERSYGKTTRTVRLPDTADTSKARAAYVNGVLKLNFPKREPLSARRRQIHIG 656
++D ET+ Y++ A++P +KKED+KV + E GVLT+ GERK E+EEK +KYH VERSYG R+ LPD D K RA + +GVL L PK E + ++ +G
Sbjct: 45 SVDVSETDGEYQIKAEIPDVKKEDVKVTL--EDGVLTIQGERKHEKEEKG------KKYHRVERSYGSFARSFTLPDLVDEEKVRAEFKDGVLNLQLPKSEKAKPKAIEVKVG 149
BLAST of mRNA_F-serratus_M_contig1328.2433.1 vs. uniprot
Match: A0A0D2UFN1_CAPO3 (Small HspC2 heat shock protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UFN1_CAPO3) HSP 1 Score: 95.9 bits (237), Expect = 1.450e-19 Identity = 52/99 (52.53%), Postives = 73/99 (73.74%), Query Frame = 3
Query: 321 LDFHETNNGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRKYHFVERSYGKTTRTVRLPDTADTSKARAAYVNGVLKLNFPKR 617
+D HE+++GY +SADLPGMKK++I V+ E+G+LT++GE+KQE +EKS+ YH ERS G+ +RT+RLP AD+SKA A Y +GVL L+ KR
Sbjct: 76 VDVHESSDGYHISADLPGMKKDEISVNC--ENGILTISGEKKQE-QEKSDHT-----YHVFERSVGRVSRTLRLPRDADSSKANAKYTDGVLTLDIAKR 166 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1328.2433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1328.2433.1 >prot_F-serratus_M_contig1328.2433.1 ID=prot_F-serratus_M_contig1328.2433.1|Name=mRNA_F-serratus_M_contig1328.2433.1|organism=Fucus serratus male|type=polypeptide|length=118bp MNLDFHETNNGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKback to top mRNA from alignment at F-serratus_M_contig1328:19163..21537+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1328.2433.1 ID=mRNA_F-serratus_M_contig1328.2433.1|Name=mRNA_F-serratus_M_contig1328.2433.1|organism=Fucus serratus male|type=mRNA|length=2375bp|location=Sequence derived from alignment at F-serratus_M_contig1328:19163..21537+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1328:19163..21537+ >mRNA_F-serratus_M_contig1328.2433.1 ID=mRNA_F-serratus_M_contig1328.2433.1|Name=mRNA_F-serratus_M_contig1328.2433.1|organism=Fucus serratus male|type=CDS|length=708bp|location=Sequence derived from alignment at F-serratus_M_contig1328:19163..21537+ (Fucus serratus male)back to top |