mRNA_F-serratus_M_contig1327.2426.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1327.2426.1 vs. uniprot
Match: D8LLZ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLZ1_ECTSI) HSP 1 Score: 741 bits (1912), Expect = 4.920e-235 Identity = 566/1551 (36.49%), Postives = 755/1551 (48.68%), Query Frame = 1
Query: 151 NRP-PDRPSTQ--TARGPRTENLASRGRHSSETKDGNCIGKERLELTSLQQKVAERDLAKNQGQEQFKRQDAEVAKLEYYIRQLVDERGGIDENIMKSIVSDLEKSALVRRTQKQFADLKDELIRKEEQLSSLKAMLNSNHVLRTVEANDSLVDKSEKLIAQSNQHATRD--GNSEVLRSLHENTRPERAE--------LEKLWAQNSAMRAEIARLRSELHAVHSREKKSNNHSGEGGDSRSFSSASEIERTGSCRRSRDHASNGEVVQRTFNPKSRHESNNGPMFYEGQTVECRTVGSGTWKPAVVDSVHLLSDTAGSSR------------DRGS-KAYAYTVWFDNG--GSEDNVPEVRIRSARGYELDDGGSPGAAHQ------SGGTIIRMRAFRPGEIVFARDSGS------KGKWSRAEVVRKDTKGMYCVLFDG-KTEEHVLHPTMLRSTNDLKQNTAGGHHIDGGDVIGIDEDSRGEYTKSVMASPAEKAELRYAEQRETRLEAARSALPEPVKVGHEVLARYLGREAWGAGTVVGQGKDELHLSVDFDSGNFTENLPFIFTTPRLTGNLSSDQTHVFPGDAVLAQK---DDTSSSD--DWYPARFKRYENDGY--CSLVFVGEGAITSIRAERAQLLHGKTMNGGLVEIPGVPPPP----------TKPVRAKKHREGDLVLACIPKIKAWTPALVTGSKGRGRYSVEWADGEKSDSLLFMFMATLGYCGKGDRSTTVAGRHPSSRDRHGGSSSVRHNDGALEGDNVVEGAPNVLNPQSRVEGDVDDGTSKSAKTYVRLRQPQLKVGEPVLAKSLHDN-VWAPGSIKKIIGDGRYDVLFEDGSSAEGLSFIYIRPLDLMALS--DNGG-----------DSPEMACPANRDEHKVGDTVYVLKRGQSPESTPLNMRNRELWRAGVIAGVSNDRYTVVYDGEEGRPQESRIPAGRIRPRQRIRQKAAEKGDAVLALSKKPGRGWVMGTVAGRTGNGLYKIEFSDGSEEDGVRFANLRHVESNDGEDDKQNKTDKPVMRAIRQRRFYAGELALARHPESRKWSMAKVLEARPDGRYDLKLFGDGDPVVRGLSFQSLRHIDRAQIPANNPHLAGCETRGDGDESQPLQNGACIGDRTLDRSTSAKTEEDQPTNHRDVNDKKGDTQKSSSDMG----------------------------DSVP-----------ALGTRAGLNAGSDVYVLRRGKCADTEVEDTSAWRTGKIVSIRGNGSLAVEYDEPGRPKEDRVAVNRVRQRYVVADRCV-----------------------------DARSGDNSAHSHRHE-RFSEGDVVVAHTQE--SDGVSLVEVEANLGLSAYRVSFLDGSGTTEVASHQLRYKIPRFCFRGLHVSKQHSREIIIFRENVVKMRKLRLGELVLAQRDCA----GGKARSWFAATVLESEGRGIYSLLFEGDEDPTRIHFARIRPLKMGDEGGETTERAGLESLVLYVSEVSFNLSTAASAARRTLPYLLLATGERGEPWDAPWL 4362
NRP P RPST T PR A+R R S + D +GK RLE+ +L+ K++E DLA +++SIV D+EKS+ ++ +Q ADLK +L KE+Q+++L+ + L+ E ++L + E+LIA+SN G + S + + + A +EL V R G+ G R S S+ +RD+ G Q H ++G FYEGQ VECR GS +W PA VDSV L + G RGS + Y Y V+FD G ++VPE RIR+A DG PG G T+IR R F G++V RD G KW+ EV+R++ G Y VL G + E HPTMLR+ + K + G + D G + TK+ SPAE+AE+RYAE+RE LE AR LP P+ VG EV+A+ G W +G VV D L V+FDSG+ +NLP IF PR G+L+ GDAVLAQK DT S D DW+ ARF+ Y+ D C + F GE A + ++A R + L+ G TKPVRAKKHREGD+VLACIP +K WTPA++TG KG GRYSVEWAD + LLFM +A++ G + G SS D S+ H+ + G + + + R + ++ VRLRQ L VGEPVLAK D W+PGS+ + G GRYD+ F DG++AE LSF+++R L S D GG D+ EM RD VGD+VYVLKRG S E T +M NR+LWR + V++ RYTV Y+GEEG+P+ESR+ A R+R R IRQKA + GDAVLALSK PGRGWVMG V R +G Y I F+DG+E D +RF NLR V + ++K + DKP RAIRQRRF GELAL +H E+RKW + KVLEA P GRYDL+ +G P G+ FQ +RH+D A ++ G + ++ +G+R S + E N D + G + S+ G D P A L GSDVYVLRRGK D +++D ++WR+GK+V +R NG+ AVEYDE G PKEDR+A NR+R+R D+ D GD+ HR + +F GD+ A T+ + V V+A LG YRV F DGSGT E+ S +L + P H SK +R K R L G+ V+A+R + G R W AA V++ YS+LF GD +P R+HF ++PL ++ R L L V+E SF+L AASAAR T P L+LATGER DA WL
Sbjct: 37 NRPAPVRPSTHRATKSTPRAAAEAAR-RLSVDPVDERAMGKVRLEVEALRDKLSEADLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCVLESIVKDIEKSSRMKHAMEQVADLKADLSLKEKQVAALRKSQAVEYTLKLAEEKEALQVRVERLIAESNSKHDSGIRGRTTSFNSASSSQKEQSAASXXXXXXXXXXXXXXXXXXXXXXXXXXAELELVEMR--------GDSGSGREHGSRSQ---------NRDNMDRGRARQ--------HCHSDGARFYEGQAVECRKQGSDSWLPATVDSVRLTIEPLGGXXXXXXXXXXXXXDSRGSHRTYMYGVYFDGEETGRREDVPEFRIRAAAS---GDGNGPGLGSSRVVRDCDGETVIRSRVFGAGDLVLVRDGGGGRTNQDNKKWTLGEVIRRNDNGTYRVLVSGGQAEGKDFHPTMLRAQDGPKNSFDSGCDVH--DQPGASQ------TKTKATSPAEEAEIRYAERREELLELARGDLPAPLHVGQEVIAKSGGSTVWSSGVVVATDSDNLRCRVEFDSGDVEDNLPCIFVRPRRGGDLAPGGD-ARTGDAVLAQKTRKQDTRSGDRGDWFAARFRSYDEDDADSCYVTFDGERASSRLQATRVRFLYPSARGGXXXXXXXXXXXXXXXXXXXXXXTKPVRAKKHREGDIVLACIPTVKKWTPAVITGVKGHGRYSVEWADFVREKPLLFMHIASMQ--GPSRKRAISVGHKKSSDD-----SADSHHATTRAPASGASGGGDTGSDERRSRVLSAESSAGGITPSVRLRQRALNVGEPVLAKKAPDQGFWSPGSVTRADGGGRYDIRFTDGTTAEDLSFLFVRGLSAEQSSGDDRGGEVDTRSGRITSDTSEMHPSGERDP-VVGDSVYVLKRGHSVEITSQDMHNRDLWRVATVTAVASGRYTVQYNGEEGKPKESRVVAERLRVRNVIRQKAVQMGDAVLALSKTPGRGWVMGAVTARGSDGKYTISFTDGTESDQIRFVNLRRVVGHAEGEEKDDHNDKPSPRAIRQRRFKKGELALTKHSETRKWVIVKVLEALPSGRYDLQFLEEGSPNALGVPFQHIRHLDLACFAGDSQGATGNGXXXXXXXKRSPRDDMAVGERIPTESHTMSDEGWDGNNGHDYHAHSGHRSRGGSEEGYHQEKRVEKPRQQREASAGGGSTDYDERDETPRNRREGDGNRGASSETRPLTIGSDVYVLRRGKRQDADLQDKTSWRSGKVVFVRSNGTFAVEYDEDGSPKEDRIAENRLRRRLNNNDKDXXXXXXXXXXXXXXXXSNNDFGRYQDRVGSDEEYGDDF---HRQDNKFEAGDMAFAQTRGWGRKNWTRVTVDAYLGKGLYRVEFADGSGTKELDSKKLSHTDPSGT---THKSKSSARAKTD--PQSTKSRWLDAGDPVVARRAASSNDDGASGRKWEAAKVVKVIDEEYYSVLFSGDPEPVRVHFTEVKPL---EDHAADNSRLVTTGLFLRVTEPSFDLKIAASAARHTSPRLILATGERANEHDALWL 1530
BLAST of mRNA_F-serratus_M_contig1327.2426.1 vs. uniprot
Match: H3GKU4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GKU4_PHYRM) HSP 1 Score: 69.3 bits (168), Expect = 7.620e-8 Identity = 87/361 (24.10%), Postives = 146/361 (40.44%), Query Frame = 1
Query: 2245 RDRHGGSSSVRHNDGALEGDNVVEGAPNVLNPQSRVEGDVDDGTSKSAKTYVRLRQPQLKVGEPVLAKSLHDNVWAPGSIKKIIGDGRYDVLFEDGSSAEGLSFIYIRPLDLMALSDNGGDSPEMACPANRDEHKVGDTVYVLKRGQSPESTPLNMRNRELWRAGVIAGVSNDRYTVVYDGEEGRPQESRIPAGRIR---------PRQRIRQKAAEK--------GDAVLALSKKPGRGWVMGTVAGRTGNGLYKIEFSDGSEEDGVRFANLRHVESNDGEDDKQNKTD-----KPVMRAIRQRRFYAGELALARHPESRKWSMAKVLEARPDGRYDLKLFGDGDPVVRGLSFQSLRHID 3261
R R G+ V ++DG +E A ++ P+ R + D+ ++ ++ + +V + V A+ G IK+I GDG YDV++EDG + + +I A +D DS E P + VG V + + + L+ + S+ Y + YD E E+R+ A +I ++K A K GD V A K G+ G +A NG Y +++ DG E V + + ES+ + DK T K ++ QR G+ A++ + K+ R DG YD+K + DGD V + ++ +D
Sbjct: 191 RVRSDGTYDVNYDDGDVE----TRVAKELIEPEVRKQDSGDEAPAR-----MKAKSGGFRVDQSVKARYKGGKKLFSGRIKRIHGDGTYDVVYEDGDEEKRVKAEHIE-----ASADPKADSDEERAPTKK--LTVGKKVKARYK-----------KGKRLFPGKISRVRSDGTYDIDYDDGES---EARVEANQIEVSDTEDMFADSDEDQKKPATKKKTGKWGVGDRVKAYYGK-GKRLFPGKIAKVHMNGTYDVKYDDGDSEARVEASLIEDAESDKTDADKLRSTKAQDSPKTSSKSSTQRPLRVGDAVKAKYKGGARLFAGKITRERMDGTYDVK-YEDGD-VEERVEVDFIQRVD 518 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1327.2426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1327.2426.1 >prot_F-serratus_M_contig1327.2426.1 ID=prot_F-serratus_M_contig1327.2426.1|Name=mRNA_F-serratus_M_contig1327.2426.1|organism=Fucus serratus male|type=polypeptide|length=1483bp MKDPHDYPSTVLESSERSRSFLGGIQVRNDEPPIFNRPPDRPSTQTARGPback to top mRNA from alignment at F-serratus_M_contig1327:38252..46326+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1327.2426.1 ID=mRNA_F-serratus_M_contig1327.2426.1|Name=mRNA_F-serratus_M_contig1327.2426.1|organism=Fucus serratus male|type=mRNA|length=8075bp|location=Sequence derived from alignment at F-serratus_M_contig1327:38252..46326+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1327:38252..46326+ >mRNA_F-serratus_M_contig1327.2426.1 ID=mRNA_F-serratus_M_contig1327.2426.1|Name=mRNA_F-serratus_M_contig1327.2426.1|organism=Fucus serratus male|type=CDS|length=8898bp|location=Sequence derived from alignment at F-serratus_M_contig1327:38252..46326+ (Fucus serratus male)back to top |