mRNA_F-serratus_M_contig1326.2422.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1326.2422.1 vs. uniprot
Match: D8LJ07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ07_ECTSI) HSP 1 Score: 176 bits (445), Expect = 4.110e-45 Identity = 151/480 (31.46%), Postives = 204/480 (42.50%), Query Frame = 1
Query: 139 TSRRLSRVYKGITNNVGAGPSEAVETGAFRSPSQRPATVSVNLTAKLSGRALGGLSSAPILTSATTSSRHPQRDDNHEDLNAERPPSNRGKNLFPRLEGCTRRTPPRPQCSGSPRPATNTGATGRFSARATFLGEEKVGQKSRYFTPPRTSPGMSHRGAQVADGSGSHIAHPEDTDAGVHGYSTDNGGEDIPLGLNKLDRKDLEVCLDVVRARLAQKARQKHPLRALDRNQQAPKSTVVSGITGEDDDIWGWTPSRDGGRGITLDRAEPTKDRRSQQGRDGRSHHXXXXXXXXXXXXXXXXXXXXXXXXQRKGAQNWDRTSVSNIGSVDGDMMSRFARSKGSRIMPLRTLMLDPEVSNIPKVRTQSDFQAVVKTRNIPHESYDIDGDGVVSPEDYAMAKRFDLKGGGILDEAQQVIGRRIIAELFLEKHKHNLHLYSQELAQKSTATNIGKIARSHGFETIMSRLREREKDLANRSSDGM 1578
+ RR RV +G+TN A S+ + S LTA+LSGR +GG T A S H NH+ ++ P G N P L G TPPRP+ T GA GR S+ +G G+ R FTPP G G D+ G DIPLGL+KLDR+DLEV +++VRA LA++A++ +QA +++V +D+ + +V+NIP+V TQSDF+A++K +NIPH SYDIDGDGVVS EDYA+AKRF A++V+GRRI+ E+FL+ HKH+LHLY Q LAQKS A N+ I+RS GF+ I+ LRE+EK+ N SDG+
Sbjct: 2 SGRRTLRVSQGVTNAAAASRSQ-----------RSHGIASAQLTARLSGR-MGGALLGSASTPALGRSAH-----NHQSIHV--PNLEGGDNPLPPLGGWGGATPPRPR--------TTAGAYGRPSSSNPEIG---AGENGRLFTPPNGGGGGEANGL------------------------LDDRGADIPLGLSKLDREDLEVYVNIVRANLARQAKK----------EQAASASLV-----DDETV---------------------------------------------------------------------------------------------------------QVNNIPQVATQSDFRALIKAQNIPHPSYDIDGDGVVSQEDYALAKRFXXXXXXXXXXAEKVVGRRIMTEVFLDNHKHDLHLYGQGLAQKSIAANVEDISRSRGFKKIIGGLREKEKNFVNHGSDGV 307
BLAST of mRNA_F-serratus_M_contig1326.2422.1 vs. uniprot
Match: A0A7S1U1N7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U1N7_9STRA) HSP 1 Score: 162 bits (409), Expect = 3.750e-40 Identity = 95/259 (36.68%), Postives = 140/259 (54.05%), Query Frame = 1
Query: 1066 QRKGAQNWDRTSVSNIGSVDGDMMSRFARSKGSRIMPLRTLMLDPEVSNIPKVRTQSDFQAVVKTRNIPHESYDIDGDGVVSPEDYAMAKRFDLKGGGILDEAQQVIGRRIIAELFLEKHKHNLHLYSQELAQKSTATNIGKIARSHGFETIMSRLREREKDLANRSSDGMKECMTLGPGSLTRHNVFSNKFDTTAGNDLSREPRCSDWLNSPRQDGSRSQMYYMRKMEARKSAHDKLMSRSTPSDKYCNRRITLITNP 1842
+R+ A+ + ++G + F+R K S PLRT +LDPEV+N+ + + + K NIPH SYDIDGDG VS ED +AKRFDL G G+LD ++ +G+RI+AE F +H ++HLY E KS N+ +AR+ F M+ L EK R S +K+C+TL RH +++KFD TA ND PR + L S +Q GSR ++ +RK+ R L ++ P + + L+ P
Sbjct: 113 ERREAEKDELAQTQSMGDYN-----MFSRPKPSTKNPLRTALLDPEVNNLIQSGSYHELAERRKMLNIPHASYDIDGDGFVSQEDLFLAKRFDLDGNGVLDPDEREVGKRILAEEFFNRHAEDIHLYGDEYEGKSVKENVKALARNVNFFKTMTNLHNMEKTFNERGSMQVKDCLTLSDPKQLRHTWYTDKFDATAWNDYGAAPRRAA-LKSMQQSGSREHLFSLRKIADRDRCAAMLKRKTKPRPRIPQGSMHLVLAP 365
BLAST of mRNA_F-serratus_M_contig1326.2422.1 vs. uniprot
Match: F0XYW8_AURAN (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYW8_AURAN) HSP 1 Score: 123 bits (308), Expect = 1.620e-26 Identity = 85/246 (34.55%), Postives = 127/246 (51.63%), Query Frame = 1
Query: 1144 FARSKGSRIMPLRTLMLDPEVSNIPKVRTQSDFQAVVKTRNIPHESYDIDGDGVVSPEDYAMAKRFDLKGGGILDEAQQVIGRRIIAELFLEKHKHNLHLY-SQELAQKSTAT---NIGKIARSHGFETIMSRLREREKDLANRSSDGMKECMT-----LGPGSLTRHNVFSNKFDTTAGNDLSREPRCSDWLNSPRQDGSRSQMYYMRKMEARKSAHDKLMSRSTPSDKYCNRRITLITNPAVEN 1854
F+R S+ +PLRTL+LDPE +N+P+ RT+S+F+ ++ N+PH SYD+DGDG VS +DY ++K D G G L Q+ GR+ +A F H+ + HLY SQ A+ +A N ++A + F + +L +EK L N S M CM+ PG AGN P + + ++ GSR ++ R + R A L T ++ +RI+LITN A EN
Sbjct: 168 FSRPVMSKKLPLRTLLLDPESNNMPRSRTRSEFKKKLRGVNVPHWSYDLDGDGEVSHDDYKISKALDALGTGQLSPVQRTRGRKTLASQFFRNHQRDAHLYGSQWTARPGSAAAEENAERLATNPSFNYSLCKLNMKEKRLINHGSYDMTVCMSDAVPEAPPG---------------AGNARDAPPPTNFYPDT--HGGSRQTLFEKRSIATRAMAQSHLDIAETKRPQFSTKRISLITNWAFEN 396
BLAST of mRNA_F-serratus_M_contig1326.2422.1 vs. uniprot
Match: A0A8J2WHH2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WHH2_9STRA) HSP 1 Score: 103 bits (256), Expect = 8.920e-21 Identity = 62/174 (35.63%), Postives = 95/174 (54.60%), Query Frame = 1
Query: 1144 FARSKGSRIMPLRTLMLDPEVSNIPKVRTQSDFQAVVKTRNIPHESYDIDGDGVVSPEDYAMAKRFDLKGGGILDEAQQVIGRRIIAELFLEKH----KHNLHLYSQELAQKSTATNIGKIARSHGFETIMSRLREREKDLANRSSDGMKECMTL--GPGSLTRHNVFSNKFDT 1647
F R++ SR PLR+++LDPEV+N+P RTQ+++ V+TRN H SYD+D DG V+ +DY +A D+ G G LD + G I+AE F E+ K + ++ ++ N ++A S F + L REK L R+S M CM GP R ++ +++ T
Sbjct: 56 FGRTQLSRTSPLRSVLLDPEVNNLPPARTQTEYAEFVRTRNKAHSSYDLDEDGQVTVQDYKLAASLDVDGDGRLDTDRHKEGGLILAERFFERQIVPAKFHGDCWTAREGREGFQENARRLANSQHFGAGLRMLEMREKRLLGRASLNMTACMQAPKGPDEGPRSHLLAHRKRT 229 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1326.2422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1326.2422.1 >prot_F-serratus_M_contig1326.2422.1 ID=prot_F-serratus_M_contig1326.2422.1|Name=mRNA_F-serratus_M_contig1326.2422.1|organism=Fucus serratus male|type=polypeptide|length=576bp MTTSRRLSRVYKGITNNVGAGPSEAVETGAFRSPSQRPATVSVNLTAKLSback to top mRNA from alignment at F-serratus_M_contig1326:143186..168464+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1326.2422.1 ID=mRNA_F-serratus_M_contig1326.2422.1|Name=mRNA_F-serratus_M_contig1326.2422.1|organism=Fucus serratus male|type=mRNA|length=25279bp|location=Sequence derived from alignment at F-serratus_M_contig1326:143186..168464+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1326:143186..168464+ >mRNA_F-serratus_M_contig1326.2422.1 ID=mRNA_F-serratus_M_contig1326.2422.1|Name=mRNA_F-serratus_M_contig1326.2422.1|organism=Fucus serratus male|type=CDS|length=3456bp|location=Sequence derived from alignment at F-serratus_M_contig1326:143186..168464+ (Fucus serratus male)back to top |