mRNA_F-serratus_M_contig1326.2424.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1326.2424.1
Unique NamemRNA_F-serratus_M_contig1326.2424.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1326.2424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1326contigF-serratus_M_contig1326:177865..185092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size452
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1326.2424.1prot_F-serratus_M_contig1326.2424.1Fucus serratus malepolypeptideF-serratus_M_contig1326 177865..185022 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929292.2830834-CDS-F-serratus_M_contig1326:177864..1780081622929292.2830834-CDS-F-serratus_M_contig1326:177864..178008Fucus serratus maleCDSF-serratus_M_contig1326 177865..178008 -
1690962786.7704954-CDS-F-serratus_M_contig1326:177864..1780081690962786.7704954-CDS-F-serratus_M_contig1326:177864..178008Fucus serratus maleCDSF-serratus_M_contig1326 177865..178008 -
1622929292.3099325-CDS-F-serratus_M_contig1326:184485..1847191622929292.3099325-CDS-F-serratus_M_contig1326:184485..184719Fucus serratus maleCDSF-serratus_M_contig1326 184486..184719 -
1690962786.783807-CDS-F-serratus_M_contig1326:184485..1847191690962786.783807-CDS-F-serratus_M_contig1326:184485..184719Fucus serratus maleCDSF-serratus_M_contig1326 184486..184719 -
1622929292.3271296-CDS-F-serratus_M_contig1326:185019..1850221622929292.3271296-CDS-F-serratus_M_contig1326:185019..185022Fucus serratus maleCDSF-serratus_M_contig1326 185020..185022 -
1690962786.7943838-CDS-F-serratus_M_contig1326:185019..1850221690962786.7943838-CDS-F-serratus_M_contig1326:185019..185022Fucus serratus maleCDSF-serratus_M_contig1326 185020..185022 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929292.3443987-UTR-F-serratus_M_contig1326:185022..1850921622929292.3443987-UTR-F-serratus_M_contig1326:185022..185092Fucus serratus maleUTRF-serratus_M_contig1326 185023..185092 -
1690962786.8049989-UTR-F-serratus_M_contig1326:185022..1850921690962786.8049989-UTR-F-serratus_M_contig1326:185022..185092Fucus serratus maleUTRF-serratus_M_contig1326 185023..185092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1326.2424.1

>prot_F-serratus_M_contig1326.2424.1 ID=prot_F-serratus_M_contig1326.2424.1|Name=mRNA_F-serratus_M_contig1326.2424.1|organism=Fucus serratus male|type=polypeptide|length=127bp
MMMPPRGRALGCTNGATRDAVVLPHCTPVRISRVPFFSCKCLLGVCLAFI
CSVARGFVLKLPDISRYDHPCGVATRRIAHNHAIVPRPRNSVCRAAGEGG
LEGEAPADEGEGDVEEGSGGDKGVEAT
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mRNA from alignment at F-serratus_M_contig1326:177865..185092-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1326.2424.1 ID=mRNA_F-serratus_M_contig1326.2424.1|Name=mRNA_F-serratus_M_contig1326.2424.1|organism=Fucus serratus male|type=mRNA|length=7228bp|location=Sequence derived from alignment at F-serratus_M_contig1326:177865..185092- (Fucus serratus male)
TGCGTCTTAATTTTGGAGCTTGAGGCCTTGTGCTCCTGAGCGAGGGCCCG
AACTACGAGATCCCGAAACGATGGTGAGGTTCCGGTGTACCCCAGAATAC
CGGACAGACTCCTTTGGCACGGTATGTCTGTTTTGAAACATGCACTCACT
ATTCGTAATGCCTCCAAGTACAACACAGGCACACAGTATTCCTACACCTT
TACGTCAAGGGTGCAGTAAATCTCCACATAGGACAGCAACCAACCGTCTC
AGTTCGATTGGCCACTACGCCACAGAAGCTGCATATCTAGCCCCGGCAGC
ATCATTATATTCACCGACCAACCCTGACACCCAGTCTTCCTCTGTTGGTG
CTGTGGTGTGTTTTTATTGTCAGATGATGCCACCCCGAGGGCGAGCCTTG
GGCTGCACGAACGGCGCGACACGGGACGCCGTGGTCCTACCGCACTGTAC
TCCCGTCCGTATTTCCAGAGTGCCATTCTTCTCTTGCAAATGTCTACTCG
GCGTCTGTTTGGCATTTATTTGTAGCGTCGCCCGTGGTTTTGTGCTTAAG
CTGCCAGACATCAGTCGGTATGACCACCCCTGCGGCGTCGCCACCAGGCG
AATAGCGGTGAGTCGCAAGAACAAACAAAACTTACACATACAACCGTACA
TACCTGATACTAACTGTACGTGGTATTGTTAAAAGAAAAATCTGAACGCG
TCTACAAGTAGACCTCCTGAGCATAGTGTACTTTGAAGAAAATACAGAAC
GCACCTAGACCTTCTGAGACAGTACTCGATATAGATTCCTTCGGACATGG
ATGTAAAGTTCTAGACAGAGCCTGCTGGCTCTACTGTACTTGTAGTGCCT
TTTCATTCTAATAATAATAATTTGCTATAATCGAAACCCATTGTGATTTC
ACGCGTAGGTTCGTGTCCTACCGTCGACGCCAGTAAGGGTACTACCCTGT
TGTTGTGGTTCGTAAACAGCGGTTCGGGGGCGACCCACGGGAGACGCACG
GGCGTAGGTACGAACCTACGGGAGCCACACGGAAGTATATACGTTCCGAT
ATTCCCAGACGAAGTGGGAAGTCGGAAGGATTGGAAAGTGAAAACGAAGT
GAGCAGGTGGGGGGTGGTCCGAGGACCACCTTCACCTTGCTCTTAACATT
CCGCTCGGACGTTTGTCGGGCGGGTGTTGATGAAACTTCCAAGTATACAC
GTGGTCTTATGCACGAGGTACTGAAGTTCTCAAATCTTCCGGTAGCAAGC
TGATAACAGAGGAAAAAACCTGATTGGCTAATGGCATGTTACCCACACTA
TCGCCACTTTCAATTATTTGTCCATAGTCAGTAAGTAAAATTCAACCATT
GGTGGACGAGTTGTAAGAATGCTGAACTTGCATCGCGATAAAAACTAGTA
GTGTAAGGCGTGAACCGGGGAGAAATGGGAAGATCCTTTGTGACCACAGG
CAGGATGGTAATTAGAGGTCCATCGGCTATAAGTGTGATCCATAACCTGA
TGAATAATATCAGGTTTTAATTTTCTAATAAACGCTCATACGGTATATAA
TTTCTGTTTGTTTTTTGTGTTGCGGGAATCATACTTTTATTCTCTGTCTG
TTGTATGATACCTGGTACCTGGTATGGATCAACCGGGTACTTCGTATGCC
GGTCGCCCCAGTGGTTCAGTTGGTAACCTTGAAACCTTCTGACGTTGGAA
CGTGAGTTCGAATCTCGGCGCAGTCAAACGAACTTGGATTTTCTCTCACA
TCATGCCGAACACGTGGAGAACAATTGTGTCGTGGGTATACAGAATTCGA
TTTCACGGTCGACGAGGGAAAGGGACGACTGAATCCTTTTCACGAGAAAA
AAGTAAGGCAAGCACCGCAGAAGGAAGGTGGAGAAAAAACTCTTGTGTGA
CCTTCCTCCTGTGTGACCCTGGCTGGTGCGTCCTGTCCTGTGTGACATAT
ATCAACCGAAAAGTGTAGTCGGACGTCCAGAATAAATAGGATGACTACAC
GACAAAACAAAAAAATGCTTTACCACACATGCTCACTGTACCGGAAGTAG
GCGTTGGGAAAGGGAGGGGTCCACATTGATTTGTCCACGGGATTACCTGG
ATAGGCAGCACCCGATACTCGAGTCATGTACCTTGAGGACCACTGGCCCT
GTACCGGCGGACTATCGGCGGTATGTATGTATGTATGGTCGTCACATATA
GCAGAGTATGGATCAACCGGGTAAGGATGCCAATCCTGCTCGTGGTCAGC
TGAACAGGGAAAATTAATATTCCCCTGTCCCGGTGCGTGCCTGAGGATTT
GGCCTCGCGAGAGAGGTTCAGCCGTCCGGTCCTGCGTCAGCCTGCTCATC
TCCATACTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTCCCGAGTT
CCGCGGCGGCATCCATTTATTTATTTTAACCGCCATACGCCATCGGGTCA
GTCCCGAGTTAATCGGGTCACGCAATTGCGTACCGATGGCGTTCACTGCC
GAGAGTCCGCCGGCACAGGACCAGTAAACCTCAAGGTAGTTCCGAACGAG
TGCTGCCTTGGCAGGTCACCATGGACTATGACCAATTAATATTCGCCTCT
CTTTTCCACACCCACTGTTGGTATGAAGTGGGCATGTTGAAAGTACCGGT
ATGTATGTATGTATGTATGGTCATCACATACGCCCCCTCCCACAACCTCC
TCGTGCACCCGTTTGTTTCGGTGCCCTCAAATTCGGTTCGCTGGAGGTTG
TCTTTGTAGGACAGAATCTTTTTTTTTCGGCAACCTGAACCAGGCTCAAA
TGATTCGAAGCAACATCATTTGGTGTGTTGTACGGAGCTTGTCGTAGTGG
CCCTTCAGGGGGGTCCATGTCGCGCACCCGTACAGGAGAGCCTCCACTGT
CATGAAGTGCGTGGCTTGATTTACCCCGATGGCCTTGATGGTTCAGATTG
ACTTCGCCGCGGGTAGGAGGGAGGAGTGGCACGTTCGAGTAAGCAATAAA
TTCAGCCTGGGTGTTGAGGATGAACCGACAGACGCGGGACGGGATAGACG
AACATCGATCGAGACCAAATTCCCCGGCGCGAATGGAAATCATTTATTAA
GTTTCTCTATTCAACTGACCACAAAAATGATCGGCAACCTTTCACGGTTG
GTTCCGAATCTGATGTTCCGCTGTTGTTGTACTTGTACTGATTTACTGCA
GCCTTCATACTTTCCTACACTGTTAGTTTTGTACGAATATGACGCTCAAG
AAAGGCGTTCTATTGCATACACGATGGAACTACTATAACTATTACTATAG
TTAGCAAGTCCCGCGTGGTGATGAGGAGCCTCACTCACCGTTAGATCGTA
ACTAACAATATCAATTACAGTACTGTAAATAGACCCCGCCGCGGAAATCG
GGAGGAATTCCGCGAGTAAGCACCATATTCAGTCTGCTGAGTATTGAGAA
TGAGCAGGCTGACGCGGGACGGGACGGCCGAACCTTTCTCGCGAGACCAA
ATTCTCAGGCGCAAACGGGGACAGGGAAATGTTCATTTTCCCTGTTCAGC
TGACCACGAGCAGGATTGGCGACCTTACCCGGTTGATCCATAATCGGTTA
TATGTGATGAGGACTATGACCATACAGTATTACAGAGTGAGGGGATATTG
CTTCTGTACGTCTGGATCCAACTATAGCATTACACTTGCGTAATCGTCCC
ACGGGTACAGCAGTGCGTATGATCACACATGACAGATGAGTGAACTCGAT
TGAGAGGGTGAAAAATGAAAAATACGTTTTGTTTTGGCATTTTTTCCCCT
CCGACTGAAGGACGATCAGAAGGTCTAGATGCTTTCAGATTTTTCTTTAA
AGACAGAAAAAAACAAACACGACTTTAACTTTTATGAATACAGTATTATT
TAATACCATTCCATCCGACCTCCTTGTATTTCCACGTAAAACCTACTGAG
AGTACGCCTGTTAGGCGGATAGCAACCCTTGGGACTAAAACCACAAGCAC
ACACAACATACGAAAGCTCGATTCCTGTAGGCTCAAAAGCTCTATATAAC
ACAAGCACTACTACTGTATTTTTACTATTAATATAACGAATTTGGAGGAC
CTTGTAAAATGCAAGTACCAGAAATAGAACAGCTGTAAGTACGATCAAGT
TTTTCCAACGGAAAATCTTCTTGACACGCGTAACTCCGGTAATATTACCA
AATCAATGCGATCAAAACAGTATTACAGCAAGTTTTTACTTCGGGTGACT
AGAGCTACTAAACTCTGTTACTATTATATTAATAACAGTAATGTATGAGG
GGTATGTATCTATGTGTGTGGCCATCACATACATCATACTATTAATAGGT
ACAGTAGTGTGGATCGACCGGGTAAGGCTACCAATTCTGCTCATGGTCAG
CTGAACAGGGAAAATGGACATTTCCCTGTCCCCGTTCGCGCCTGAGAATC
TGGTCCCGAGACGGGTTCGGTCGCCCCGTCCCGCGTCAGCCTCCTCATTC
TCCATACTCAGGCTGAATATGGTGCTCACTCGCGGGATTTATCCCGATTT
CCGTGGCGGTGTCCATTTATTTACTTGAACCGTCATACGCCATCGGCTCA
GTCCCGAGTTTATCAGGTCGCACAGAGTTGCGTACCGATGGCGTTCACTG
CTGAGAGTCCGCAGGCTCAAGGCCAGTAGCTCTCAAAGTGGTTCCAGTGA
CGGATGCTGTTTTTGCATCACCATGGACTAGACAATTGATGTGCGCCTTT
TTCTGTTTCCATTGAAGAAGGGGAAGCTACTTGTAATGAGAAGGAAGAGG
TAGATGTATGTCGCCGAAAGTTTTATTATACTATTAATACTATTAATAAA
TATACTTGGTGCTTGTACGTGTTAGTAGTAATGGTAGATCTGTGCTGTAC
AGCAGTCGAGGTTGTAAAGCCACGAAAAAGCGACGTACATGGAACGATAG
GAAGACTCAAATGTCGACGGTCAAGGGTACTGCTTCGCGTTCGCTCCACG
CAGAGGCATTCCCTGTGCAATATACAGATATTATATTATGGGGCTTCGCC
AAAAAGGGGTACACCCCCCTGTTTTTACGCCAAAAGGGCACACCAAAAAA
ACGTATGGAAAATCTACAATAAACACAGCATGATTTCTCACTGTGCCCCT
TTTTGGCGGAAAAACACAGGGAATACCCCCTGTGTCTATTCAGCTCAACA
AGTACCCCTTTTTGGCGGTAGAAATTACTGGAAATTACCCCTTTTTGGCG
AATGCACGAGATTATTTCTCAGAGAGCAGTACTTCCAGGCAGCACGACAG
CAAGGCTATTTAGCACTTCAGTCATGAAGGACTCATTAAGGTCCCAGTCT
GGGTGCGACAAGCTGAGCGGACGTTCCACTAGTCGCCTCCGCAAGGAGAT
TCTCGGGACAGGGGATAAAGAAGTCGCGACAGCATATACGATGCTCGAGA
GCTTGTTAGAGTTCATACGTGACAAGTGCGGAGCTAACGTTACCGAATGA
GTAGAGGGAATGCTTGCGCGCAGCGGGCCTGTAAGTCTTTTGGTCAGGGA
TCCTGTGTTGTTTGCATTCCGTCCCTGTCCTCATCGGAAATATTCGTTAA
ATTATCCCCTTCTCACTGAGTTACACCCTTGAATTTGAATTTGGCTTTGA
ATCAAAATGATTTGTGGATCGGAGACAACTGCTGTAACTGAACATATATG
TTCAAAGATGAGACCACTTTTCCACGAACTTCGAAGTGTCCTCAACAGCA
AATCCACAACGCGCTTCACAGACGGCCACAAGAGATCCGACGCTGCCCTC
ACGGCCGCGTGTCCCTTTGCTCGTATACATATACTGCAACCGTGGTGATT
TCCATTTTTTGTTCCTTTTGTGACACTCACAATTGAAGTATAGTGCAAGT
TACATACGTTTTTTTTCGTGACATTTACAAGTGGACGCTTGATGCAACAA
CTTGAAAAACTAGCTCGTCGGCAAGGCCATCTATGCCTGCGGTTCGTTCA
CGACTTTGTAAGCGCGGTGTTTAAGGCACGAAATAGTTGCGGATGGCGCC
ATTTTAGTAATAAACGAACTACAGTATGATATTGCAATGCGGCCTCTTCG
TGGCCAAAATTTGTGTGGTCGAAACCGCTGAAATATGTTTTGATCTGTAC
ATCAGTATTATATCCGGGGAATCAAGTGCTTGCAATACAAAGGTATTCAT
CTTGTTCACCCTGGTTCACCCTTTTGTTCATGAGTTCTTGTCCTGTTCTT
GTCCCTGAGGCCAATGTTCCCGCCTAAACCTTAACCTTTTGACTGATTGG
AAGGTTTAGATGCGTTCAGATTTTTCTTTGGATACTGCATACCCTTTTTA
CAGTTCCAACACCATTTTGAGAGCCAACACGGTGTACCTACGCCTTGTTG
CATTTTGATCTTCCTGGCGGGACTGTTGCCCCTTTTTCCCGTTTTCTAGG
TGTGCCCCTTTTTGGCGTCGAAACAAGGAGGTGTACCCCTTTTTGGCGAA
GCCCCTTATATTATTTGCTAGAGCTTGGAAAGCCCAAGCGAGCTTTTGGG
AAGCAGCCGTAAACGAACGACTATGTGTTTCAAGAAAAATCAGAATGCGC
CTAGACTTTCTGAGCATACCCCTCTGGTATCCTCGTTTGACTCTTTCAGA
ATGGGTTGGTGCTCATATCGTGGCGTAAGCGAAAATTGAAGGGGAGAGAG
CTCTAGTTGTTTGTACTGGATGCGAAAAAATATCAGGTAACATCAGTTTT
CCTTCGTCCCAGACGGGTACCGACGGGTAAATACCGACGACTAAATGAAC
CGTCTGCATCGTGACGGGCAAATAACTTGTATTAGCACCCGTGCTATAAT
ATCACAGCCTTGTTTTTACTTTTAAATGTCATTCAATTCCCTCCCCCAAA
CGTAGCAATGAACCGAGCTACACGTCTGATCTTTGATCGTTCCGCTTCGA
CTTCGAGCCCAACCTACATAAATGATACAGCAAAAATACTTACTTTGTTT
CACTCCTCAACGCCTCCCCCACCCACGAAACCCCCTTTTCCACTCGTTAC
CAATCAACTTCTTACCCCGTTGTGCTGGTCATAGCACAACCACGCCATTG
TACCAAGACCACGGAACAGCGTCTGCCGGGCGGCCGGCGAAGGTGGCCTG
GAGGGAGAGGCACCAGCAGACGAGGGGGAGGGAGACGTTGAGGAGGGATC
CGGGGGTGACAAAGGGGTGGAGGCCACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1326:177865..185092-

>mRNA_F-serratus_M_contig1326.2424.1 ID=mRNA_F-serratus_M_contig1326.2424.1|Name=mRNA_F-serratus_M_contig1326.2424.1|organism=Fucus serratus male|type=CDS|length=762bp|location=Sequence derived from alignment at F-serratus_M_contig1326:177865..185092- (Fucus serratus male)
ATGATGATGATGCCACCCCGAGGGCGAGCCTTGGGCTGCACGAACGGCGC
GACACGGGACGCCGTGGTCCTACCGCACTGTACTCCCGTCCGTATTTCCA
GAGTGCCATTCTTCTCTTGCAAATGTCTACTCGGCGTCTGTTTGGCATTT
ATTTGTAGCGTCGCCCGTGGTTTTGTGCTTAAGCTGCCAGACATCAGTCG
GTATGACCACCCCTGCGGCGTCGCCACCAGGCGAATAGCGATGATGCCAC
CCCGAGGGCGAGCCTTGGGCTGCACGAACGGCGCGACACGGGACGCCGTG
GTCCTACCGCACTGTACTCCCGTCCGTATTTCCAGAGTGCCATTCTTCTC
TTGCAAATGTCTACTCGGCGTCTGTTTGGCATTTATTTGTAGCGTCGCCC
GTGGTTTTGTGCTTAAGCTGCCAGACATCAGTCGGTATGACCACCCCTGC
GGCGTCGCCACCAGGCGAATAGCGCACAACCACGCCATTGTACCAAGACC
ACGGAACAGCGTCTGCCGGGCGGCCGGCGAAGGTGGCCTGGAGGGAGAGG
CACCAGCAGACGAGGGGGAGGGAGACGTTGAGGAGGGATCCGGGGGTGAC
AAAGGGGTGGAGGCCACGCACAACCACGCCATTGTACCAAGACCACGGAA
CAGCGTCTGCCGGGCGGCCGGCGAAGGTGGCCTGGAGGGAGAGGCACCAG
CAGACGAGGGGGAGGGAGACGTTGAGGAGGGATCCGGGGGTGACAAAGGG
GTGGAGGCCACG
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