prot_F-serratus_M_contig132.2392.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig132.2392.1
Unique Name	prot_F-serratus_M_contig132.2392.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	198

Homology

[Close]

BLAST of mRNA_F-serratus_M_contig132.2392.1 vs. uniprot
Match: D8LEX7_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX7_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.980e-38
Identity = 88/157 (56.05%), Postives = 108/157 (68.79%), Query Frame = 0

Query:   48 VAIVVGCGVFTLVILCIVRKIMDLCLMRFDPTGSISYSQEEGLPKATIERLPQTRYRKPPPKVQVKAAKIGEKHDGPASIG-----AAAVTGGDVSSVSVTEADEERGSTIIVPVVAA-AGAEESAADG-RDSTEDMCAICLIEYEHGDDLRIIPGC 197
            ++IVVGCGV TL++LC+VRK+MDLCL+R DPTGS+ YSQEEGL K +IERLPQTRY++P   V   A K G+K   PAS G       A   G+   V+ ++     GS+   P  A  AGAE    +G RDSTEDMCAICL+EYE GD+LRIIPGC
Sbjct:   63 ISIVVGCGVLTLILLCVVRKVMDLCLLRNDPTGSLRYSQEEGLTKRSIERLPQTRYKRP---VSGTAQKKGDKKT-PASDGKKPDDTEAAAAGEEGGVTGSDLHGPPGSSTAAPKTAVVAGAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGC 215

[Close]

BLAST of mRNA_F-serratus_M_contig132.2392.1 vs. uniprot
Match: A0A6H5KYP0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYP0_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.970e-35
Identity = 82/155 (52.90%), Postives = 102/155 (65.81%), Query Frame = 0

Query:   48 VAIVVGCGVFTLVILCIVRKIMDLCLMRFDPTGSISYSQEEGLPKATIERLPQTRYRKPPP-KVQVKAAKIGEKHDGPASIGAAAVTGGDVSSVSVTEADE----ERGSTIIVPVVAAAGAEESAADGRDSTEDMCAICLIEYEHGDDLRIIPGC 197
            ++IVVGCGV TL++LC+VRK+MDLCL+R DPTGS+ YSQEEGL K +IERLP+TRY++P     Q K  K     DG    G  A   G+   V+ ++         G+     V+AA G E   A  RDSTEDMCAICL+EYE GD+LRIIPGC
Sbjct:  256 ISIVVGCGVLTLILLCVVRKVMDLCLLRNDPTGSLRYSQEEGLTKRSIERLPETRYKRPVSGSAQKKGGKKTPAADGKKPDGTEAAAAGEEGGVTGSDLHGAPAGRTGAPQTAVVLAAEGGEREGA--RDSTEDMCAICLVEYETGDELRIIPGC 408

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig132.2392.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig132.2392.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LEX7_ECTSI	2.980e-38	56.05	RING-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KYP0_9PHAE	1.970e-35	52.90	RING-type domain-containing protein n=1 Tax=Ectoca...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 66..198
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 46..65
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..45
None	No IPR available	TMHMM	TMhelix		coord: 46..65

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig132	contig	F-serratus_M_contig132:465442..468562 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig132.2392.1	mRNA_F-serratus_M_contig132.2392.1	Fucus serratus male	mRNA	F-serratus_M_contig132 465442..468562 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig132.2392.1 ID=prot_F-serratus_M_contig132.2392.1|Name=mRNA_F-serratus_M_contig132.2392.1|organism=Fucus serratus male|type=polypeptide|length=198bp
PGPADLPVGGFDCTELKKGEKDPGEGANIVDDSMAGEGNTSMNLDVIVAI
VVGCGVFTLVILCIVRKIMDLCLMRFDPTGSISYSQEEGLPKATIERLPQ
TRYRKPPPKVQVKAAKIGEKHDGPASIGAAAVTGGDVSSVSVTEADEERG
STIIVPVVAAAGAEESAADGRDSTEDMCAICLIEYEHGDDLRIIPGCK