prot_F-serratus_M_contig132.2385.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig132.2385.1
Unique Nameprot_F-serratus_M_contig132.2385.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length753
Homology
BLAST of mRNA_F-serratus_M_contig132.2385.1 vs. uniprot
Match: A0A6H5L0R8_9PHAE (ARID domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R8_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 5.980e-38
Identity = 88/176 (50.00%), Postives = 109/176 (61.93%), Query Frame = 0
Query:    2 MEENAVVALEGLYSDPMKVRELAQAREIFAFLRANGQGSVLEKVPSVDGGASVLDIVALFGVITSRGGVRRVQEQSLWKEVMTGLGYPFDRQTLFAVSMHYKNFLYGYEQAALGARADVGGQQKSLPPQAQPPLPXXXXXXXARPPVASQVGGVAQPFDQ---YQRHLRQREFEKQ 174
            M+E AV ALE LYS P+K REL +AREIFAFLR+NGQG+VL  VP V+G   +LD+VAL   IT RGGVRRVQ++ LW EV + LG    +QTLF +S+HYKNFLYG+EQ    +R+  G  Q            XX      R   A   G   Q ++Q   YQ  +RQRE E+Q
Sbjct:    1 MDERAVAALESLYSGPIKARELVRAREIFAFLRSNGQGTVLRDVPMVNG--KLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQVHFPSRSSAGQHQXXXXXXXXXXXXXXVVPPMGRDQHAGMSGVGTQRYEQHGHYQGQMRQRELEQQ 174          
BLAST of mRNA_F-serratus_M_contig132.2385.1 vs. uniprot
Match: D8LEX2_ECTSI (ARID/BRIGHT DNA binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX2_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 7.960e-34
Identity = 74/123 (60.16%), Postives = 89/123 (72.36%), Query Frame = 0
Query:    2 MEENAVVALEGLYSDPMKVRELAQAREIFAFLRANGQGSVLEKVPSVDGGASVLDIVALFGVITSRGGVRRVQEQSLWKEVMTGLGYPFDRQTLFAVSMHYKNFLYGYEQAALGARADVGGQQ 124
            M+E AV ALE LYS P+K  EL +AREIFAFLR NGQG+VL  VP V+G   +LD+VAL   IT RGGVRRVQ++ LW EV + LG    +QTLF +S+HYKNFLYG+EQA     A VG Q+
Sbjct:    1 MDERAVAALESLYSGPIKAGELVRAREIFAFLRGNGQGAVLRDVPMVNG--KLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQAR---HAGVGTQR 118          
BLAST of mRNA_F-serratus_M_contig132.2385.1 vs. uniprot
Match: A0A7S3DMK3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DMK3_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.520e-5
Identity = 59/221 (26.70%), Postives = 104/221 (47.06%), Query Frame = 0
Query:  549 EYVSSVALVFPTLVSMVDDE--DRSRVLSGLAILSKLSQ-----------METNKEAFDRV-------PNCFLERLVELLSIPKLGCDVLATKAGVSSQEWLEYNCRVLHSADAGSDEEVRDSALEVM-SLLAGISDSLRSRLGIIPGCART-LTDVVLAN-TRGIRIDPQARRMAALTLTSLGTVESNHPGMRPLYSDLLVAAARDSQAAELLFHGLKTV 746
            +Y+ ++  +FP L+ ++ +    R  +L  +  L +L             +E ++EA   +       P+  L+RLV+LL +P+LG D L     V +        ++L   DA  D +VRD  L+V+  LL   S  + +RLG  P   RT L D ++   T G+  + +A  + A     L     N  G+  + S L+  A+RD++ A L+++ L  +
Sbjct:   12 DYLVAIWSIFPALMHVLTNPRCPRPVLLVAVDFLQELINHARIGVVGQVDLEDDEEAIPTIRAVLVSMPDAVLDRLVDLLYVPRLGPDSLEYLDPVHNIVTRVTTLKLLGGYDATIDTDVRDRTLDVLVPLLELDSPRMAARLGKSPSGVRTRLWDALVPILTSGVGRN-EATVLGAQLFRELSKAPENRSGLEYVQSRLVELASRDNRVAHLVWNHLYPI 231          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig132.2385.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L0R8_9PHAE5.980e-3850.00ARID domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LEX2_ECTSI7.960e-3460.16ARID/BRIGHT DNA binding domain containing protein ... [more]
A0A7S3DMK3_9STRA4.520e-526.70Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 184..268
NoneNo IPR availableSMARTSM01014ARID_2coord: 21..110
e-value: 1.3E-4
score: 31.3
NoneNo IPR availablePANTHERPTHR23196:SF1PAX-INTERACTING PROTEIN 1coord: 123..287
NoneNo IPR availablePANTHERPTHR23196PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEINcoord: 123..287
NoneNo IPR availableSUPERFAMILY81995beta-sandwich domain of Sec23/24coord: 226..292
IPR001606ARID DNA-binding domainSMARTSM00501bright_3coord: 19..115
e-value: 2.7E-4
score: 25.2
IPR001606ARID DNA-binding domainPFAMPF01388ARIDcoord: 29..110
e-value: 6.4E-8
score: 33.2
IPR001606ARID DNA-binding domainPROSITEPS51011ARIDcoord: 19..114
score: 15.435
IPR036431ARID DNA-binding domain superfamilyGENE3D1.10.150.60coord: 9..126
e-value: 7.5E-14
score: 53.2
IPR036431ARID DNA-binding domain superfamilySUPERFAMILY46774ARID-likecoord: 37..119
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 329..722

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig132contigF-serratus_M_contig132:308036..336177 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig132.2385.1mRNA_F-serratus_M_contig132.2385.1Fucus serratus malemRNAF-serratus_M_contig132 307438..336194 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig132.2385.1 ID=prot_F-serratus_M_contig132.2385.1|Name=mRNA_F-serratus_M_contig132.2385.1|organism=Fucus serratus male|type=polypeptide|length=753bp
MMEENAVVALEGLYSDPMKVRELAQAREIFAFLRANGQGSVLEKVPSVDG
GASVLDIVALFGVITSRGGVRRVQEQSLWKEVMTGLGYPFDRQTLFAVSM
HYKNFLYGYEQAALGARADVGGQQKSLPPQAQPPLPQQQQQQEARPPVAS
QVGGVAQPFDQYQRHLRQREFEKQQQQQLRHQRQMELQQKMQQQRQQKQR
REEQQRKEEEEQEQKRKLQEKQRFLVKQQQQQQLQMEQEQLFHHQQQRQQ
AQNQMILKQQQQQQQQQQQQHQYHRPQASPYQAPPHRHGAVPKPPGDDYH
AANAFKYGNPRMRSAGPGGVSASIPRADLPKALRSKNSPREVVAAVNTLT
LETYDAPEELMLEVIPGLLDAIFDLMDSLNPAVTQVISLAQTLRAQIPKG
TESTLALLDASFKCAERPGGLCGNYFSGLPPSGRGELLLLLLNALRNASF
VPSNERVIGHSARAIQHFVTLCLATSPEPAVFAATLDLFGRVTKHVDIWG
TRAAETDYDGCKWAEDSLSYLAPAHVRMVTTSASAGGGGGGITSPSALEY
VSSVALVFPTLVSMVDDEDRSRVLSGLAILSKLSQMETNKEAFDRVPNCF
LERLVELLSIPKLGCDVLATKAGVSSQEWLEYNCRVLHSADAGSDEEVRD
SALEVMSLLAGISDSLRSRLGIIPGCARTLTDVVLANTRGIRIDPQARRM
AALTLTSLGTVESNHPGMRPLYSDLLVAAARDSQAAELLFHGLKTVFPFV
AA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001606ARID_dom
IPR036431ARID_dom_sf
IPR016024ARM-type_fold