mRNA_F-serratus_M_contig1317.2360.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1317.2360.1 vs. uniprot
Match: D7G7L6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L6_ECTSI) HSP 1 Score: 517 bits (1332), Expect = 1.440e-145 Identity = 344/720 (47.78%), Postives = 409/720 (56.81%), Query Frame = 3
Query: 15 GGGKDSSWVPPSEFPPGHEESPVEGGGTAAGTRCLANADESEGSGKHGDKSNGELASSNGTGHAEYLKALGPLKLRDEADPFSMDLGVTEKGDIVKVLEASAADARWVRVAYRGREDGWILSANKRGPTLVPHEDPASAAADFDAQEASHAVAAA-------------------AASVAAAENLDDRPLKSKGGNESSWVPPSEFPPGHEES--SAAAGTVEVAKTGGEEKEGSGKTLGSDPIGDSAESAGEIGRPEFMQTLGPLKIRDEPDPCSMDLGVTATGEIVKILEASATDTRWLRVAYRGREDGWILSANKRGPTLVPLDDPASAAAGFDAQEASHAAAAAASVVAAENLDDRPLKSK--------------------GGNKSSWVPPSEFPPGHEESP---GAEGIAEVAKTGAVKGGDKEAPGQYRGDANGESLASSSGSVRPEYMRALGPLKVRNEADPFSMDLGVTERGDIVKVLEASAADARWVRVAYRGREDGWILSANKRGPTLVPLEDPASAAADFDAQEASFAVAA--------------------AASVTAARDVDDRPLNAGGGKQSSWAPPSEFPEGQEELPVAGEKEGAEERDGGDPV---------------GESTSPGGTGPPQYMQTLGPLKLRDEADPCSMDLGVTQTGDIVKVLEASAKDGRWVRVAYRGREDGWILSANKKGPTLVPLEDLASAA 1937
GGGK +WVPPSEFPPGHE GG + G+ A S AE+ ALG +K+R+EADPFSMDLG KGDIVKVLE S WVRV YRGREDGW+L+ANKRGPTLVP ED ASAA +FD QEA+ A AA AA +DRPL GG + +WVPPSEFPPG E+ S G + K E G+D GD A S+ E+M LG +K+R+E DP SMDLG G+IVK+LEAS W+RV YRGREDGW+L+ANKRGPTLVP +D SAA FD QEA A A+++ V E+ DRPL G K +WVPPSEFPPG E+ P G +G A V K A + D A GQ A GE+++S EY+ ALG +KVR EADPFSMDLG ++GD+VKVLEAS WVRV YRGREDGW+L+ANKRGPTLVP ED SAA +FD QEA+FA ++ AA A D +DRPL GG + +W PPSEFP G E+ PV G DGGD + G ++ G T +YM LG +K+R+EADP SMDLG + GDIVKVLE S WVRV YR REDGW+L+ANK+GPTLVP ED SAA
Sbjct: 851 GGGK-GAWVPPSEFPPGHE-----GGAPSXXXXXXXXXXXXXXXXXXXXXXAGDEAVS-----AEFFTALGFVKVREEADPFSMDLGSVRKGDIVKVLETSKL---WVRVCYRGREDGWVLTANKRGPTLVPSEDQASAAGEFDEQEAAFAANGGGALPEDPSDRPLTGAKPPPAAPTAATGASEDRPLT--GGGKGAWVPPSEFPPGQEDGPVSRGDGGDALVKKASAESVVDAPGQGNDSAGDEAVSS------EYMTALGFVKVREEADPFSMDLGSVKKGDIVKVLEASKL---WVRVCYRGREDGWVLTANKRGPTLVPSEDQDSAAGEFDKQEA--AFASSSGEVVPEDPSDRPLTGAKPPPAAPTSAIGDSEXXXXXXGGKGAWVPPSEFPPGGEDGPVGGGDDGDALVKKASAERVVD--AAGQGNDSAGGEAVSS-------EYLTALGFVKVREEADPFSMDLGSVKKGDVVKVLEASKL---WVRVCYRGREDGWVLTANKRGPTLVPSEDQDSAAGEFDKQEAAFASSSGGVVPEDPADRPLTGAKPPPAAPAAATGDSEDRPLTGGG--KGAWVPPSEFPPGGEDGPVGG-------GDGGDALVKKASAGSVVDAAGQGNDSAGGATVSSEYMTALGFVKVREEADPFSMDLGSVKRGDIVKVLETSEL---WVRVCYRSREDGWVLTANKRGPTLVPSEDQDSAA 1519
BLAST of mRNA_F-serratus_M_contig1317.2360.1 vs. uniprot
Match: A0A6H5L4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T0_9PHAE) HSP 1 Score: 518 bits (1333), Expect = 2.520e-145 Identity = 346/730 (47.40%), Postives = 422/730 (57.81%), Query Frame = 3
Query: 15 GGGKDSSWVPPSEFPPGHEESPV-EGGGTAAGTRCLANADESEGSGKHGDKSNGELASSNGTGHAEYLKALGPLKLRDEADPFSMDLGVTEKGDIVKVLEASAADARWVRVAYRGREDGWILSANKRGPTLVPHEDPASAAADFDAQEASHAVAAAAASVAAAENLDDRPLKSK--------------------GGNESSWVPPSEFPPGHEESSAAAGTVEVAKTGGE---EKEGSGKTLGSDPIGDSAESAG-EIGRPEFMQTLGPLKIRDEPDPCSMDLGVTATGEIVKILEASATDTRWLRVAYRGREDGWILSANKRGPTLVPLDDPASAAAGFDAQEASHAAAAA----------------------ASVVAAENLDDRPLKSKGGNKSSWVPPSEFPPGHEESPGAEGIAEVAKTGAVKGGDKEAPGQYRGDANGESLASSSGS-VRPEYMRALGPLKVRNEADPFSMDLGVTERGDIVKVLEASAADARWVRVAYRGREDGWILSANKRGPTLVPLEDPASAAADFDAQEASFAVA--------------------------AAASVTAARDVDDRPLNAGGGKQSSWAPPSEFPEGQEELPVAGEKEGAEERDGGDPVGESTSPGGTGPP---------------QYMQTLGPLKLRDEADPCSMDLGVTQTGDIVKVLEASAKDGRWVRVAYRGREDGWILSANKKGPTLVPLEDLASAA 1937
GGGK +WVPPSEFPPG E+ PV G G + + + +G+ D + E SS EY+ ALG +K+R+EADPFSMDLG +KGDIVKVLE S WVRV YRGREDGW+L+ANKRGPT VP ED SAA +FDAQEA+ A A++ A AE+ DRPL GG + +WVPPSEFPPG E+ +G GG+ +K +G + D G +SAG E E+M LG +K+R+E DP SMDLG G+IVK+LE S W+RV YRGREDGWIL+ANKRGPTLVP +D SAA FDAQEA+ A+++ A A + +DRPL GG K WVPPSEFPPG E+ G+ G + GA G K +P DA ++ S+ G+ V EYM ALG +KVR EADPFSMDLG ++GDIVKVL+ S WVRV YRGREDGW+L+ANKRGPTLVP ED ASAA +FDAQEA+FA + AAS + D D+R L GG + +W PPSEFP GQE PV+ DGGD + + S G +YM LG +K+R+EADP SMDLG + GDIVKVLE S WVRV YRGREDGW+L+ANK+GPTLVP ED SAA
Sbjct: 666 GGGK-GAWVPPSEFPPGEEDGPVGSGDGGDVLVKKASAGSVVDAAGQEKDSAGDEAVSS------EYMTALGFVKVREEADPFSMDLGSVKKGDIVKVLETSKL---WVRVCYRGREDGWVLTANKRGPTFVPSEDQDSAAGEFDAQEAAFA---ASSGGAVAEDPSDRPLTGAKPPPAASTAATGDSEXXXXXGGGKGAWVPPSEFPPGEEDGPVGSGD------GGDVLVKKASAGSAV--DAAGQEKDSAGDEAVSSEYMTALGFVKVREEADPFSMDLGSVKKGDIVKVLETSKL---WVRVCYRGREDGWILTANKRGPTLVPSEDQDSAAGEFDAQEAAFASSSGGALPEDPADRPLTGAKPKPPSVAPTAATGDSEDRPLT--GGGKDGWVPPSEFPPGQED--GSVGSGD----GAXXXGAKPSPADVD-DAREQANDSAGGAAVSSEYMTALGFVKVREEADPFSMDLGSVKKGDIVKVLKMSNL---WVRVCYRGREDGWVLTANKRGPTLVPSEDQASAAGEFDAQEAAFASSRGGALPEDPADRPLTGAKPKPPSVAPTAASGSEVGDGDERALTGGG--KGAWVPPSEFPPGQEGGPVSS-------GDGGDALVKEASAGSVVDAARQGNDSAGDEAVSSEYMTALGFVKVREEADPFSMDLGSVKKGDIVKVLETSEL---WVRVCYRGREDGWVLTANKRGPTLVPSEDQDSAA 1347 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1317.2360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1317.2360.1 >prot_F-serratus_M_contig1317.2360.1 ID=prot_F-serratus_M_contig1317.2360.1|Name=mRNA_F-serratus_M_contig1317.2360.1|organism=Fucus serratus male|type=polypeptide|length=1295bp MGEGGVPWAGGRLDSLRQQERPHPRSPRRSRLRGRGFDVQEASFATAEVVback to top mRNA from alignment at F-serratus_M_contig1317:218710..233126+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1317.2360.1 ID=mRNA_F-serratus_M_contig1317.2360.1|Name=mRNA_F-serratus_M_contig1317.2360.1|organism=Fucus serratus male|type=mRNA|length=14417bp|location=Sequence derived from alignment at F-serratus_M_contig1317:218710..233126+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1317:218710..233126+ >mRNA_F-serratus_M_contig1317.2360.1 ID=mRNA_F-serratus_M_contig1317.2360.1|Name=mRNA_F-serratus_M_contig1317.2360.1|organism=Fucus serratus male|type=CDS|length=7770bp|location=Sequence derived from alignment at F-serratus_M_contig1317:218710..233126+ (Fucus serratus male)back to top |