mRNA_F-serratus_M_contig1316.2348.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1316.2348.1
Unique NamemRNA_F-serratus_M_contig1316.2348.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1316.2348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1316contigF-serratus_M_contig1316:9630..9847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size179
Cds size108
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1316.2348.1prot_F-serratus_M_contig1316.2348.1Fucus serratus malepolypeptideF-serratus_M_contig1316 9664..9810 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929275.108558-UTR-F-serratus_M_contig1316:9629..96631622929275.108558-UTR-F-serratus_M_contig1316:9629..9663Fucus serratus maleUTRF-serratus_M_contig1316 9630..9663 -
1690962779.8305216-UTR-F-serratus_M_contig1316:9629..96631690962779.8305216-UTR-F-serratus_M_contig1316:9629..9663Fucus serratus maleUTRF-serratus_M_contig1316 9630..9663 -
1622929275.1513712-UTR-F-serratus_M_contig1316:9810..98471622929275.1513712-UTR-F-serratus_M_contig1316:9810..9847Fucus serratus maleUTRF-serratus_M_contig1316 9811..9847 -
1690962779.8558047-UTR-F-serratus_M_contig1316:9810..98471690962779.8558047-UTR-F-serratus_M_contig1316:9810..9847Fucus serratus maleUTRF-serratus_M_contig1316 9811..9847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929275.122052-CDS-F-serratus_M_contig1316:9663..97061622929275.122052-CDS-F-serratus_M_contig1316:9663..9706Fucus serratus maleCDSF-serratus_M_contig1316 9664..9706 -
1690962779.8391433-CDS-F-serratus_M_contig1316:9663..97061690962779.8391433-CDS-F-serratus_M_contig1316:9663..9706Fucus serratus maleCDSF-serratus_M_contig1316 9664..9706 -
1622929275.136774-CDS-F-serratus_M_contig1316:9745..98101622929275.136774-CDS-F-serratus_M_contig1316:9745..9810Fucus serratus maleCDSF-serratus_M_contig1316 9746..9810 -
1690962779.8474839-CDS-F-serratus_M_contig1316:9745..98101690962779.8474839-CDS-F-serratus_M_contig1316:9745..9810Fucus serratus maleCDSF-serratus_M_contig1316 9746..9810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1316.2348.1

>prot_F-serratus_M_contig1316.2348.1 ID=prot_F-serratus_M_contig1316.2348.1|Name=mRNA_F-serratus_M_contig1316.2348.1|organism=Fucus serratus male|type=polypeptide|length=36bp
MFSMGRKTTASKCCVHNKPFQTTKTINRGCMSFMV*
back to top

mRNA from alignment at F-serratus_M_contig1316:9630..9847-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1316.2348.1 ID=mRNA_F-serratus_M_contig1316.2348.1|Name=mRNA_F-serratus_M_contig1316.2348.1|organism=Fucus serratus male|type=mRNA|length=218bp|location=Sequence derived from alignment at F-serratus_M_contig1316:9630..9847- (Fucus serratus male)
GATTCAAGCGTTCGCCCAAAAGTTTGAGGAATACAAAATGTTCAGCATGG
GCCGCAAAACCACCGCCTCAAAGTGCTGCGTTCACAACAAGCCGTTCCAA
ACGCACTGCCCCTGTCGCAGGTGAGAGTGTGCTGCAAAAAGTACGAAAAC
AATAAATCGGGGATGTATGTCGTTCATGGTCTAGTGCAACCTTTCGTTTT
GATGCCTGGTGGAAACTG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1316:9630..9847-

>mRNA_F-serratus_M_contig1316.2348.1 ID=mRNA_F-serratus_M_contig1316.2348.1|Name=mRNA_F-serratus_M_contig1316.2348.1|organism=Fucus serratus male|type=CDS|length=216bp|location=Sequence derived from alignment at F-serratus_M_contig1316:9630..9847- (Fucus serratus male)
ATGTTCAGCATGGGCCGCAAAACCACCGCCTCAAAGTGCTGCGTTCACAA
CAAGCCGTTCCAAACATGTTCAGCATGGGCCGCAAAACCACCGCCTCAAA
GTGCTGCGTTCACAACAAGCCGTTCCAAACTACGAAAACAATAAATCGGG
GATGTATGTCGTTCATGGTCTAGTACGAAAACAATAAATCGGGGATGTAT
GTCGTTCATGGTCTAG
back to top