mRNA_F-serratus_M_contig1313.2345.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1313.2345.1
Unique NamemRNA_F-serratus_M_contig1313.2345.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5KRT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.090e-20
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:    4 RNTLMAEFSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELIVKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAFFA 318
            +  L   F M+D+G+V   L I + RD+E GT+ +SQE YV A+LERFG+ +  PVSTP  G E+       + L     K YQ++ GS+++L   TRFD+++ A
Sbjct:   74 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNALLERFGMQEANPVSTPGYGAEIYTDQPQDQILGPTDMKIYQSMTGSILYLAQCTRFDLSYAA 178
[Close]
BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.560e-20
Identity = 48/105 (45.71%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:    1 VRNTLMAEFSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELI-VKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAF 312
            V+  L   F M+DLG+ S  L + I RD EA T+ +SQE Y ++ILERFG+S  KP STP  G E+  ++PE +  LDEK T++YQ ++GSL+++    R+DI +
Sbjct:  135 VKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMY 238
[Close]
BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.840e-20
Identity = 48/105 (45.71%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:    1 VRNTLMAEFSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELI-VKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAF 312
            V+  L   F M+DLG+ S  L + I RD EA T+ +SQE Y ++ILERFG+S  KP STP  G E+  ++PE +  LDEK T++YQ ++GSL+++    R+DI +
Sbjct: 1364 VKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMY 1467
[Close]
BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.140e-20
Identity = 48/105 (45.71%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:    1 VRNTLMAEFSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELI-VKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAF 312
            V+  L   F M+DLG+ S  L + I RD EA T+ +SQE Y ++ILERFG+S  KP STP  G E+  ++PE +  LDEK T++YQ ++GSL+++    R+DI +
Sbjct:  695 VKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMY 798
[Close]
BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.690e-20
Identity = 42/105 (40.00%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:    4 RNTLMAEFSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELIVKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAFFA 318
            +  L   F M+D+G+V   L I + RD+E GT+ +SQE YV  +LERFG+ +  PVSTP  G E+       + L     K YQ++ GS+++L   TRFD+++ A
Sbjct:   74 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKNYQSMTGSILYLAQCTRFDLSYAA 178
[Close]
BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.940e-20
Identity = 44/104 (42.31%), Postives = 64/104 (61.54%), Query Frame = 1 
Query:    1 VRNTLMAEFSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELIVKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAF 312
            ++  L   F M+D+G+V   L + I RD   GT+ +SQE Y ++ILERFG+S+CKP STP  G EL  K      L E+ T+ YQ ++G LI++    R+DI +
Sbjct:  672 IKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLSEEETRRYQGIVGCLIYIAQVLRYDIMY 775
[Close]
BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 9.290e-20
Identity = 47/101 (46.53%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:   13 LMAEFSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELI-VKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAF 312
            L   F M+DLG+ S  L ++I RD EA T+ +SQE Y ++ILERFG+S  KP STP  G E+  ++PE +  LDEK T++YQ ++GSL+++    R+DI +
Sbjct:  360 LQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMY 459
[Close]
BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.280e-19
Identity = 48/104 (46.15%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:    1 VRNTLMAEFSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELI--VKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDI 306
            V+  L   F M+DLG+ S  L + I RD EA T+ +SQE Y ++ILERFG+S  KP STP  G E+   ++PE +  LDEK T++YQ ++GSL+++    R+DI
Sbjct:  521 VKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNNIQPEDT-LLDEKETRKYQGIMGSLMYIALVLRYDI 623
[Close]
BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5KG29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG29_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.550e-19
Identity = 42/105 (40.00%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:    4 RNTLMAEFSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELIVKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAFFA 318
            +  L   F M+D+G+V   L I + RD+E GT+ +SQE YV  +LERFG+ +  PVSTP  G E+       + L     K YQ++ GS+++L   TRFD+++ A
Sbjct:  203 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDNKIYQSMTGSILYLAQCTRFDLSYAA 307
[Close]
BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.860e-19
Identity = 42/105 (40.00%), Postives = 63/105 (60.00%), Query Frame = 1 
Query:    4 RNTLMAEFSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELIVKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAFFA 318
            +  L   F M+D+G+V   L I + RD+E GT+ +SQE YV  +LERFG+ +  PVSTP  G E+       + L     K YQ++ GS+++L   TRFD+++ A
Sbjct:   74 KKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAA 178
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRT7_9PHAE1.090e-2040.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5U2_9PHAE2.560e-2045.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE3.840e-2045.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE5.140e-2045.71Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAK0_9PHAE6.690e-2040.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE6.940e-2042.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JME8_9PHAE9.290e-2046.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KMG0_9PHAE1.280e-1946.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KG29_9PHAE2.550e-1940.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KUJ3_9PHAE2.860e-1940.00Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1313contigF-serratus_M_contig1313:146941..147261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score75.1
Seed ortholog evalue2.1e-11
Seed eggNOG ortholog7425.NV18779-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BGB6@33208,3E4E9@33213,3SZU9@50557,42CQ9@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size321
Cds size306
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929274.6506412-CDS-F-serratus_M_contig1313:146940..1472461622929274.6506412-CDS-F-serratus_M_contig1313:146940..147246Fucus serratus maleCDSF-serratus_M_contig1313 146941..147246 -
1690962779.567448-CDS-F-serratus_M_contig1313:146940..1472461690962779.567448-CDS-F-serratus_M_contig1313:146940..147246Fucus serratus maleCDSF-serratus_M_contig1313 146941..147246 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929274.6908994-UTR-F-serratus_M_contig1313:147246..1472611622929274.6908994-UTR-F-serratus_M_contig1313:147246..147261Fucus serratus maleUTRF-serratus_M_contig1313 147247..147261 -
1690962779.5780892-UTR-F-serratus_M_contig1313:147246..1472611690962779.5780892-UTR-F-serratus_M_contig1313:147246..147261Fucus serratus maleUTRF-serratus_M_contig1313 147247..147261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1313.2345.1prot_F-serratus_M_contig1313.2345.1Fucus serratus malepolypeptideF-serratus_M_contig1313 146941..147246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1313.2345.1

>prot_F-serratus_M_contig1313.2345.1 ID=prot_F-serratus_M_contig1313.2345.1|Name=mRNA_F-serratus_M_contig1313.2345.1|organism=Fucus serratus male|type=polypeptide|length=102bp
MAEFSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCK
PVSTPWTGRELIVKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAFF
A*
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mRNA from alignment at F-serratus_M_contig1313:146941..147261-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1313.2345.1 ID=mRNA_F-serratus_M_contig1313.2345.1|Name=mRNA_F-serratus_M_contig1313.2345.1|organism=Fucus serratus male|type=mRNA|length=321bp|location=Sequence derived from alignment at F-serratus_M_contig1313:146941..147261- (Fucus serratus male)
GTAAGAAATACGTTGATGGCTGAATTCTCCATGAGCGATTTGGGTGATGT
ATCTGAAACATTGGCTATTCGCATTAACAGAGACTTTGAGGCTGGAACAA
TCTTACTTAGTCAAGAAAAGTACGTGGAAGCTATCCTGGAACGATTTGGA
TTGAGTGATTGTAAACCGGTAAGCACACCGTGGACAGGAAGAGAACTAAT
AGTGAAACCAGAAGGCAGCAAGTACTTGGATGAAAAGGGAACAAAGGAAT
ATCAAGCACTGATCGGTTCTCTAATATTTTTGACTACAAACACTAGGTTT
GACATTGCTTTTTTTGCTTAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1313:146941..147261-

>mRNA_F-serratus_M_contig1313.2345.1 ID=mRNA_F-serratus_M_contig1313.2345.1|Name=mRNA_F-serratus_M_contig1313.2345.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig1313:146941..147261- (Fucus serratus male)
ATGGCTGAATTCTCCATGAGCGATTTGGGTGATGTATCTGAAACATTGGC
TATTCGCATTAACAGAGACTTTGAGGCTGGAACAATCTTACTTAGTCAAG
AAAAGTACGTGGAAGCTATCCTGGAACGATTTGGATTGAGTGATTGTAAA
CCGGTAAGCACACCGTGGACAGGAAGAGAACTAATAGTGAAACCAGAAGG
CAGCAAGTACTTGGATGAAAAGGGAACAAAGGAATATCAAGCACTGATCG
GTTCTCTAATATTTTTGACTACAAACACTAGGTTTGACATTGCTTTTTTT
GCTTAAATGGCTGAATTCTCCATGAGCGATTTGGGTGATGTATCTGAAAC
ATTGGCTATTCGCATTAACAGAGACTTTGAGGCTGGAACAATCTTACTTA
GTCAAGAAAAGTACGTGGAAGCTATCCTGGAACGATTTGGATTGAGTGAT
TGTAAACCGGTAAGCACACCGTGGACAGGAAGAGAACTAATAGTGAAACC
AGAAGGCAGCAAGTACTTGGATGAAAAGGGAACAAAGGAATATCAAGCAC
TGATCGGTTCTCTAATATTTTTGACTACAAACACTAGGTTTGACATTGCT
TTTTTTGCTTAA
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