mRNA_F-serratus_M_contig1312.2339.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1312.2339.1
Unique NamemRNA_F-serratus_M_contig1312.2339.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1312.2339.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 1.300e-48
Identity = 108/294 (36.73%), Postives = 170/294 (57.82%), Query Frame = 1
Query:   10 EVYKRQAPGFTTKSSR-GQSFILDLRGSIYGLRQSPKAWHGTIGKYL*IINLLPAASDTCMYVKGSGDNYLMLTLYVDDLLITGPNNNTVAKVPKTLIDEFPMAYVWDVTRLVGVDIIQDKERGTISISQVPHLLSPLDKYDMSDYNLVRTPGIGNGL-TAEPEGRV--PFNKEGTTEYHNITGPLIIFYVFARFDI-YFAVHAALFISKPTPIHMGAVKHILHYFRGRPDLHITYSRNSNFELIDLCDAAYGTVNPQKSWSTPGSTYVLSGRVVYFRTIIQRIAAQSTTEAEL 876
            +VY R APG + K+S  G+  +  L  S+YGL QSP  W+ T+ + L +       SD C+YV  SG+  ++LT+YVDD+LITG +   V +  K L D F M  + +V R++G+D+ +D E+GT++ISQ  ++ + L+++ M + N V TPG G  + T +P+ ++  P +K+    Y ++TG ++      RFD+ Y A+  +   S P  ++M A KH+L Y RG P L I Y R   F L    D+++G  NP    ST G  + L+G ++ +    Q + AQST EAE+
Sbjct:  464 DVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKK---IYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEI 752          
BLAST of mRNA_F-serratus_M_contig1312.2339.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 2.700e-48
Identity = 106/293 (36.18%), Postives = 168/293 (57.34%), Query Frame = 1
Query:   13 VYKRQAPGFTTKSSR-GQSFILDLRGSIYGLRQSPKAWHGTIGKYL*IINLLPAASDTCMYVKGSGDNYLMLTLYVDDLLITGPNNNTVAKVPKTLIDEFPMAYVWDVTRLVGVDIIQDKERGTISISQVPHLLSPLDKYDMSDYNLVRTPGIGNGL-TAEPEGRV--PFNKEGTTEYHNITGPLIIFYVFARFDI-YFAVHAALFISKPTPIHMGAVKHILHYFRGRPDLHITYSRNSNFELIDLCDAAYGTVNPQKSWSTPGSTYVLSGRVVYFRTIIQRIAAQSTTEAEL 876
            VY R APG + K+S  G+  +  L  S+YGL QSP  W+ T+ + L +       SD C+YV  SG+  ++LT+YVDD+LITG +   V +  K L D F M  + +V R++G+D+ +D E+GT++ISQ  ++ + L+++ M + N V T G G  + T +P+ ++  P +K+    Y ++TG ++      +FD+ Y A+  +   S P  ++M A KH+L Y RG P L I Y R   F L    D+++G  NP    ST G  + L+G ++ +    Q + AQST EAE+
Sbjct:  101 VYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKK---IYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEI 388          
BLAST of mRNA_F-serratus_M_contig1312.2339.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.930e-47
Identity = 106/294 (36.05%), Postives = 169/294 (57.48%), Query Frame = 1
Query:   10 EVYKRQAPGFTTKSSR-GQSFILDLRGSIYGLRQSPKAWHGTIGKYL*IINLLPAASDTCMYVKGSGDNYLMLTLYVDDLLITGPNNNTVAKVPKTLIDEFPMAYVWDVTRLVGVDIIQDKERGTISISQVPHLLSPLDKYDMSDYNLVRTPGIGNGL-TAEPEGRV--PFNKEGTTEYHNITGPLIIFYVFARFDI-YFAVHAALFISKPTPIHMGAVKHILHYFRGRPDLHITYSRNSNFELIDLCDAAYGTVNPQKSWSTPGSTYVLSGRVVYFRTIIQRIAAQSTTEAEL 876
            +VY R APG + K+S  G+  +  L  S+YGL QS   W+ T+ + L ++      SD C+YV  SG+  ++LT+YVDD+LITG +   V +  K L D F M  + +V R++G+D+ +D E+GT++ISQ  ++ + L+++ M + N V TPG G  + T +P+ ++  P +K+    Y ++ G ++      RFD+ Y A+  +   S P  ++M A KH+L Y RG P L I Y R   F L    D+++G  NP    ST G  + L+G ++ +    Q + AQST EAE+
Sbjct:  308 DVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKK---IYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEI 596          
BLAST of mRNA_F-serratus_M_contig1312.2339.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 4.880e-47
Identity = 98/273 (35.90%), Postives = 156/273 (57.14%), Query Frame = 1
Query:   70 ILDLRGSIYGLRQSPKAWHGTIGKYL*IINLLPAASDTCMYVKGSGDNYLMLTLYVDDLLITGPNNNTVAKVPKTLIDEFPMAYVWDVTRLVGVDIIQDKERGTISISQVPHLLSPLDKYDMSDYNLVRTPGIGNGL-TAEPEGRV--PFNKEGTTEYHNITGPLIIFYVFARFDI-YFAVHAALFISKPTPIHMGAVKHILHYFRGRPDLHITYSRNSNFELIDLCDAAYGTVNPQKSWSTPGSTYVLSGRVVYFRTIIQRIAAQSTTEAEL 876
            +  L  S+YGL QSP  W+ T+ + L +       SD C+YV  SG+  ++LT+YVDD+LITG +   V +  K L D F M  + +V R++G+D+ +D E+GT++ISQ  ++ + L+++ M + N V TPG G  + T +P+ ++  P +K+    Y ++TG ++      RFD+ Y A+  +   S P  ++M A KH+L Y RG P L I Y R   F L    D+++G  NP    ST G  + L+G ++ +    Q + AQST E E+
Sbjct:    2 VYKLARSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKN---YQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVETEI 269          
BLAST of mRNA_F-serratus_M_contig1312.2339.1 vs. uniprot
Match: A0A6H5K7T8_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7T8_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 1.570e-45
Identity = 104/294 (35.37%), Postives = 171/294 (58.16%), Query Frame = 1
Query:   10 EVYKRQAPGFTTKS-SRGQSFILDLRGSIYGLRQSPKAWHGTIGKYL*IINLLPAASDTCMYVKGSGDNYLMLTLYVDDLLITGPNNNTVAKVPKTLIDEFPMAYVWDVTRLVGVDIIQDKERGTISISQVPHLLSPLDKYDMSDYNLVRTPGIGNGL-TAEPEGRV--PFNKEGTTEYHNITGPLIIFYVFARFDI-YFAVHAALFISKPTPIHMGAVKHILHYFRGRPDLHITYSRNSNFELIDLCDAAYGTVNPQKSWSTPGSTYVLSGRVVYFRTIIQRIAAQSTTEAEL 876
            +VY R APG + K+ + G+  + +L  S+YGL Q P  W  T+ + L +       SD C+YV  SG+  ++LT+YVDD+LITG +   V +  K L D F M  + +V R++G+D+ +D E+GT++ISQ  ++ + L+++ M + N V TPG G  + T +P+ ++  P +K+    Y ++TG ++      RFD+ Y A+  +   S P  ++M A KH+L Y RG P L I  S+  +F L+ L  +++G  NP    ST G  + L+G ++ +    Q ++A ST EAE+
Sbjct:  507 DVYVRPAPGTSAKNYATGEPMMYELERSLYGLSQYPALWKDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKK---IYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYRRGNPVLPIV-SKRGHFRLVALTGSSFGA-NPGNGRSTTGYLFFLAGGLISYGAKTQTLSAHSTVEAEI 795          
BLAST of mRNA_F-serratus_M_contig1312.2339.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 2.010e-45
Identity = 97/273 (35.53%), Postives = 155/273 (56.78%), Query Frame = 1
Query:   70 ILDLRGSIYGLRQSPKAWHGTIGKYL*IINLLPAASDTCMYVKGSGDNYLMLTLYVDDLLITGPNNNTVAKVPKTLIDEFPMAYVWDVTRLVGVDIIQDKERGTISISQVPHLLSPLDKYDMSDYNLVRTPGIGNGL-TAEPEGRV--PFNKEGTTEYHNITGPLIIFYVFARFDI-YFAVHAALFISKPTPIHMGAVKHILHYFRGRPDLHITYSRNSNFELIDLCDAAYGTVNPQKSWSTPGSTYVLSGRVVYFRTIIQRIAAQSTTEAEL 876
            +  L  S+YGL QSP  W+ T+ + L +       SD C+YV  +G+  ++LT+YVDD+LITG +   V +  K L D F M  + +V R++G+ + +D E+GT++ISQ  ++ + L+++ M + N V TPG G  + T +P+ ++  P  K+    Y ++TG ++      RFD+ Y A+  +   S P  ++M A KH+L Y RG P L I Y R   F L    D+++G  NP    ST G  + L+G ++ +    Q + AQST EAE+
Sbjct:    2 VYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTTGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKN---YQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPGLPIVYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEI 269          
BLAST of mRNA_F-serratus_M_contig1312.2339.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 5.020e-45
Identity = 104/300 (34.67%), Postives = 168/300 (56.00%), Query Frame = 1
Query:   10 EVYKRQAPGFTTKSSRGQS-FILDLRGSIYGLRQSPKAWHGTIGKYL*IINLLPAASDTCMYVKGSGDNYLMLTLYVDDLLITGPNNNTVAKVPKTLIDEFPMAYVWDVTRLVGVDIIQDKERGTISISQVPHLLSPLDKYDMSDYNLVRTPGIGNGL-TAEPEGRV--PFNKEGTTEYHNITGPLIIFYVFARFDI-YFAVHAALFISKPTPIHMGAVKHILHYFRGRPDLHITYSRNS------NFELIDLCDAAYGTVNPQKSWSTPGSTYVLSGRVVYFRTIIQRIAAQSTTEAEL 876
            +VY R APG + K+S  +   +  L  S+YGL QSP  W+ T+ + L +       SD C+YV  SG++ ++ ++YVDD+LITG +   V +  K L D F M  + +V R++G+D+ +D E+GT++ISQ  ++ + L+++ M + N V TPG G  + T +P+ ++  P +K+    Y ++TG ++      RFD+ Y A+  +   S P  ++M A KH+L Y RG P L I Y R           L    D+++G  NP    ST G  + L+G ++ +    Q + AQST EAE+
Sbjct:  687 DVYVRPAPGTSAKNSATEEPMVYKLERSLYGLLQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVISSVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKK---IYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKREQIRLAAEQIRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEI 982          
BLAST of mRNA_F-serratus_M_contig1312.2339.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 4.170e-42
Identity = 102/294 (34.69%), Postives = 166/294 (56.46%), Query Frame = 1
Query:   10 EVYKRQAPGFTTKSSR-GQSFILDLRGSIYGLRQSPKAWHGTIGKYL*IINLLPAASDTCMYVKGSGDNYLMLTLYVDDLLITGPNNNTVAKVPKTLIDEFPMAYVWDVTRLVGVDIIQDKERGTISISQVPHLLSPLDKYDMSDYNLVRTPGIGNGL-TAEPEGRV--PFNKEGTTEYHNITGPLIIFYVFARFDI-YFAVHAALFISKPTPIHMGAVKHILHYFRGRPDLHITYSRNSNFELIDLCDAAYGTVNPQKSWSTPGSTYVLSGRVVYFRTIIQRIAAQSTTEAEL 876
            +VY R APG + K+S  G+  +  L  S+YGL QSP  W+ T+ + L +        D C+Y+  SG+  ++LT+YVDD+LITG +   V +  K L D F M  + +V R++G+D+ +D E+GT++ISQ  ++ + L+++ M + N V T G G  + T +P+ ++  P +K+    Y ++T  ++      RFD+ Y A+  +   S P  +++ A KH+L Y RG P L I Y R   F L    D+++G  N     ST G  + L+G ++ +    Q + AQST EAE+
Sbjct:  201 DVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITGGDQQLVDQ-KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKK---IYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNLTAAKHVLRYLRGNPVLPIVYKRGQ-FWLAASTDSSFGA-NLDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEI 488          
BLAST of mRNA_F-serratus_M_contig1312.2339.1 vs. uniprot
Match: A0A6H5KCT3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT3_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 5.120e-39
Identity = 101/294 (34.35%), Postives = 158/294 (53.74%), Query Frame = 1
Query:   10 EVYKRQAPGFTTKSSR-GQSFILDLRGSIYGLRQSPKAWHGTIGKYL*IINLLPAASDTCMYVKGSGDNYLMLTLYVDDLLITGPNNNTVAKVPKTLIDEFPMAYVWDVTRLVGVDIIQDKERGTISISQVPHLLSPLDKYDMSDYNLVRTPGIGNGL-TAEPEGRV--PFNKEGTTEYHNITGPLIIFYVFARFDI-YFAVHAALFISKPTPIHMGAVKHILHYFRGRPDLHITYSRNSNFELIDLCDAAYGTVNPQKSWSTPGSTYVLSGRVVYFRTIIQRIAAQSTTEAEL 876
            +VY R APG + K+S  G+  +  L  S+YGL QSP  W+ T+ + L +       SD C+YV  SG+  ++LT+YVDD+LITG +   V +  K L D F M  +               E+ T++ISQ  ++ + L+++ M + N V TPG G  + T +P+ ++  P +K+    Y ++TG ++      +FD+ Y A+  +   S P  ++M A KH+L Y RG P L I Y R   F L    D+++G  NP    ST G  + L+G ++ +    Q + AQST EAE+
Sbjct:  689 DVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMG--------------EQETLAISQEHYVNTVLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKK---IYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEI 963          
BLAST of mRNA_F-serratus_M_contig1312.2339.1 vs. uniprot
Match: A0A6H5KS50_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS50_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.560e-38
Identity = 96/274 (35.04%), Postives = 152/274 (55.47%), Query Frame = 1
Query:   10 EVYKRQAPGFTTKSSR-GQSFILDLRGSIYGLRQSPKAWHGTIGKYL*IINLLPAASDTCMYV-KGSGDNYLMLTLYVDDLLITGPNNNTVAKVPKTLIDEFPMAYVWDVTRLVGVDIIQDKERGTISISQVPHLLSPLDKYDMSDYNLVRTPGIGNGL-TAEPEGRVPFNKEGTTEYHNITGPLIIFYVFARFDI-YFAVHAALFISKPTPIHMGAVKHILHYFRGRPDLHITYSRNSNFELIDLCDAAYGTVNPQKSWSTPGSTYVLSGRVV 819
            +VY R APG + K+S  G+  +  L  S+YGL QSP  W+ T+ + L +       SD C+YV   SG+  ++LT+ VDD+LITG +   V +  K L + F M  + +V R++G+D+ +D E+GT++ISQ  ++ + L+++ M + N V T G G  + T +P+ +  F       Y ++TG ++      RFD+ Y A+  +   S P  ++M A KH+L Y RG P L I Y R   F L    D+++G  NP    ST G    L+G ++
Sbjct:  407 DVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVCLTSGNTIVILTVCVDDILITGGDQQLVDQPKKELTNRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHNVNTLLERFGMQEANPVSTSGYGAEISTNQPQDQ--FLGPMVNFYQSMTGSILYVAQCTRFDLSYAALPLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIAYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLSFLAGGLI 676          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1312.2339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE92_9PHAE1.300e-4836.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE2.700e-4836.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE1.930e-4736.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KAK0_9PHAE4.880e-4735.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K7T8_9PHAE1.570e-4535.37Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KUJ3_9PHAE2.010e-4535.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJR8_9PHAE5.020e-4534.67Integrase catalytic domain-containing protein n=11... [more]
A0A6H5JDU8_9PHAE4.170e-4234.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCT3_9PHAE5.120e-3934.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KS50_9PHAE2.560e-3835.04Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1312contigF-serratus_M_contig1312:93277..94155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score100.1
Seed ortholog evalue1.4e-18
Seed eggNOG ortholog161934.XP_010676254.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3894V@33090,3GY0Z@35493,COG2801@1,KOG0017@2759
COG Functional cat.T
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size879
Cds size693
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929273.6411686-CDS-F-serratus_M_contig1312:93276..939691622929273.6411686-CDS-F-serratus_M_contig1312:93276..93969Fucus serratus maleCDSF-serratus_M_contig1312 93277..93969 -
1690962779.0152762-CDS-F-serratus_M_contig1312:93276..939691690962779.0152762-CDS-F-serratus_M_contig1312:93276..93969Fucus serratus maleCDSF-serratus_M_contig1312 93277..93969 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929273.6607974-UTR-F-serratus_M_contig1312:93969..941551622929273.6607974-UTR-F-serratus_M_contig1312:93969..94155Fucus serratus maleUTRF-serratus_M_contig1312 93970..94155 -
1690962779.02433-UTR-F-serratus_M_contig1312:93969..941551690962779.02433-UTR-F-serratus_M_contig1312:93969..94155Fucus serratus maleUTRF-serratus_M_contig1312 93970..94155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1312.2339.1prot_F-serratus_M_contig1312.2339.1Fucus serratus malepolypeptideF-serratus_M_contig1312 93277..93969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1312.2339.1

>prot_F-serratus_M_contig1312.2339.1 ID=prot_F-serratus_M_contig1312.2339.1|Name=mRNA_F-serratus_M_contig1312.2339.1|organism=Fucus serratus male|type=polypeptide|length=231bp
MYVKGSGDNYLMLTLYVDDLLITGPNNNTVAKVPKTLIDEFPMAYVWDVT
RLVGVDIIQDKERGTISISQVPHLLSPLDKYDMSDYNLVRTPGIGNGLTA
EPEGRVPFNKEGTTEYHNITGPLIIFYVFARFDIYFAVHAALFISKPTPI
HMGAVKHILHYFRGRPDLHITYSRNSNFELIDLCDAAYGTVNPQKSWSTP
GSTYVLSGRVVYFRTIIQRIAAQSTTEAELI
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mRNA from alignment at F-serratus_M_contig1312:93277..94155-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1312.2339.1 ID=mRNA_F-serratus_M_contig1312.2339.1|Name=mRNA_F-serratus_M_contig1312.2339.1|organism=Fucus serratus male|type=mRNA|length=879bp|location=Sequence derived from alignment at F-serratus_M_contig1312:93277..94155- (Fucus serratus male)
CTCTCCGAAGAAGTCTACAAGCGGCAAGCCCCGGGGTTTACGACTAAGAG CTCTCGGGGGCAATCGTTCATCCTAGACCTCCGCGGATCGATTTACGGAC TGCGGCAGTCGCCAAAAGCGTGGCACGGAACTATTGGCAAATACCTATGA ATCATTAACCTCCTACCGGCGGCTAGCGATACGTGCATGTACGTCAAGGG CAGCGGGGACAACTACTTGATGCTTACGTTGTACGTGGACGATCTGCTTA TCACGGGACCCAACAACAACACCGTGGCCAAAGTGCCTAAGACACTCATA GACGAGTTCCCCATGGCGTATGTTTGGGATGTAACTCGTCTCGTGGGAGT CGATATAATCCAGGACAAGGAGCGCGGCACCATTAGTATCAGCCAGGTTC CTCACTTGCTATCGCCACTGGACAAGTACGACATGTCCGACTACAATCTT GTGCGCACGCCTGGCATTGGCAACGGGTTGACGGCGGAGCCCGAAGGCCG CGTACCATTCAACAAGGAGGGCACCACCGAGTACCACAACATCACGGGGC CCCTCATCATCTTTTACGTATTTGCGCGTTTTGACATCTATTTTGCGGTG CATGCAGCGCTATTCATAAGCAAACCAACACCCATCCACATGGGGGCCGT CAAGCACATCTTACACTACTTTCGTGGCAGACCCGATCTTCACATCACCT ACAGTCGCAACAGCAACTTCGAGCTCATTGACTTATGCGACGCTGCATAC GGTACTGTGAACCCGCAGAAGTCGTGGTCTACACCAGGGAGCACGTACGT TCTCTCTGGGAGAGTCGTCTACTTCCGTACAATCATTCAAAGGATAGCGG CGCAATCCACAACCGAGGCGGAGCTCATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1312:93277..94155-

>mRNA_F-serratus_M_contig1312.2339.1 ID=mRNA_F-serratus_M_contig1312.2339.1|Name=mRNA_F-serratus_M_contig1312.2339.1|organism=Fucus serratus male|type=CDS|length=1386bp|location=Sequence derived from alignment at F-serratus_M_contig1312:93277..94155- (Fucus serratus male)
ATGTACGTCAAGGGCAGCGGGGACAACTACTTGATGCTTACGTTGTACGT
GGACGATCTGCTTATCACGGGACCCAACAACAACACCGTGGCCAAAGTGC
CTAAGACACTCATAGACGAGTTCCCCATGGCGTATGTTTGGGATGTAACT
CGTCTCGTGGGAGTCGATATAATCCAGGACAAGGAGCGCGGCACCATTAG
TATCAGCCAGGTTCCTCACTTGCTATCGCCACTGGACAAGTACGACATGT
CCGACTACAATCTTGTGCGCACGCCTGGCATTGGCAACGGGTTGACGGCG
GAGCCCGAAGGCCGCGTACCATTCAACAAGGAGGGCACCACCGAGTACCA
CAACATCACGGGGCCCCTCATCATCTTTTACGTATTTGCGCGTTTTGACA
TCTATTTTGCGGTGCATGCAGCGCTATTCATAAGCAAACCAACACCCATC
CACATGGGGGCCGTCAAGCACATCTTACACTACTTTCGTGGCAGACCCGA
TCTTCACATCACCTACAGTCGCAACAGCAACTTCGAGCTCATTGACTTAT
GCGACGCTGCATACGGTACTGTGAACCCGCAGAAGTCGTGGTCTACACCA
GGGAGCACGTACGTTCTCTCTGGGAGAGTCGTCTACTTCCGTACAATCAT
TCAAAGGATAGCGGCGCAATCCACAACCGAGGCGGAGCTCATCATGTACG
TCAAGGGCAGCGGGGACAACTACTTGATGCTTACGTTGTACGTGGACGAT
CTGCTTATCACGGGACCCAACAACAACACCGTGGCCAAAGTGCCTAAGAC
ACTCATAGACGAGTTCCCCATGGCGTATGTTTGGGATGTAACTCGTCTCG
TGGGAGTCGATATAATCCAGGACAAGGAGCGCGGCACCATTAGTATCAGC
CAGGTTCCTCACTTGCTATCGCCACTGGACAAGTACGACATGTCCGACTA
CAATCTTGTGCGCACGCCTGGCATTGGCAACGGGTTGACGGCGGAGCCCG
AAGGCCGCGTACCATTCAACAAGGAGGGCACCACCGAGTACCACAACATC
ACGGGGCCCCTCATCATCTTTTACGTATTTGCGCGTTTTGACATCTATTT
TGCGGTGCATGCAGCGCTATTCATAAGCAAACCAACACCCATCCACATGG
GGGCCGTCAAGCACATCTTACACTACTTTCGTGGCAGACCCGATCTTCAC
ATCACCTACAGTCGCAACAGCAACTTCGAGCTCATTGACTTATGCGACGC
TGCATACGGTACTGTGAACCCGCAGAAGTCGTGGTCTACACCAGGGAGCA
CGTACGTTCTCTCTGGGAGAGTCGTCTACTTCCGTACAATCATTCAAAGG
ATAGCGGCGCAATCCACAACCGAGGCGGAGCTCATC
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